Wall clock time and date at job start Mon Mar 30 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.43249 * 2 1 4 4 C 1.54885 * 110.49325 * 237.45570 * 2 1 3 5 5 C 1.54885 * 102.75053 * 203.37948 * 4 2 1 6 6 C 1.54265 * 104.19867 * 37.94057 * 5 4 2 7 7 C 1.53882 * 106.59691 * 336.39092 * 6 5 4 8 8 C 1.52995 * 110.03237 * 119.28480 * 7 6 5 9 9 C 1.50704 * 110.03059 * 240.71717 * 7 6 5 10 10 O 1.20820 * 119.99960 * 117.16599 * 9 7 6 11 11 O 1.34227 * 120.00090 * 297.16212 * 9 7 6 12 12 C 1.45197 * 117.00075 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47178 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46885 * 300.00004 * 13 12 11 15 15 C 1.52995 * 109.47410 * 59.99755 * 13 12 11 16 16 C 1.50693 * 109.47179 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00072 * 1.35194 * 16 13 12 18 18 C 1.37875 * 119.99983 * 181.36090 * 16 13 12 19 19 N 1.31515 * 120.00082 * 193.95939 * 18 16 13 20 20 Si 1.86798 * 120.00237 * 13.95769 * 18 16 13 21 21 H 1.48503 * 109.47385 * 84.55711 * 20 18 16 22 22 H 1.48504 * 109.47517 * 204.55822 * 20 18 16 23 23 H 1.48506 * 109.47068 * 324.55987 * 20 18 16 24 24 H 1.09001 * 109.46889 * 181.08819 * 1 2 3 25 25 H 1.09004 * 109.47002 * 61.10066 * 1 2 3 26 26 H 1.08996 * 109.47820 * 301.09417 * 1 2 3 27 27 H 1.09000 * 110.75250 * 321.69225 * 4 2 1 28 28 H 1.09002 * 110.75968 * 84.87460 * 4 2 1 29 29 H 1.09004 * 110.48620 * 156.61738 * 5 4 2 30 30 H 1.09004 * 110.48693 * 279.12570 * 5 4 2 31 31 H 1.08999 * 110.03518 * 95.67588 * 6 5 4 32 32 H 1.09000 * 110.03408 * 217.06082 * 6 5 4 33 33 H 1.08999 * 109.47254 * 302.83075 * 8 7 6 34 34 H 1.08998 * 109.47018 * 62.83184 * 8 7 6 35 35 H 1.08993 * 109.47178 * 182.83514 * 8 7 6 36 36 H 1.08997 * 109.46803 * 300.00104 * 12 11 9 37 37 H 1.08998 * 109.46876 * 60.00133 * 12 11 9 38 38 H 1.09006 * 109.47231 * 69.31898 * 14 13 12 39 39 H 1.08997 * 109.47131 * 189.31431 * 14 13 12 40 40 H 1.09003 * 109.47395 * 309.31750 * 14 13 12 41 41 H 1.09004 * 109.46845 * 60.00011 * 15 13 12 42 42 H 1.08997 * 109.47539 * 180.02562 * 15 13 12 43 43 H 1.09007 * 109.47484 * 300.00325 * 15 13 12 44 44 H 0.96998 * 120.00090 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7805 -1.2230 5 6 3.4908 -1.1969 -0.7612 6 6 3.3166 -1.5413 0.7324 7 6 2.0699 -0.7802 1.2164 8 6 1.0139 -1.7681 1.7161 9 6 2.4448 0.1768 2.3186 10 8 2.3003 1.3660 2.1612 11 8 2.9394 -0.2919 3.4750 12 6 3.2782 0.6874 4.4921 13 6 3.8227 -0.0297 5.7292 14 6 2.7589 -0.9845 6.2747 15 6 5.0739 -0.8239 5.3489 16 6 4.1738 0.9866 6.7850 17 1 4.0032 2.0371 6.6013 18 6 4.7130 0.5754 7.9855 19 7 4.7654 1.4077 9.0023 20 14 5.3691 -1.1641 8.1677 21 1 6.7680 -1.2200 7.6725 22 1 5.3345 -1.5589 9.5989 23 1 4.5264 -2.0964 7.3765 24 1 -0.3633 -1.0275 0.0195 25 1 -0.3633 0.4967 -0.8997 26 1 -0.3634 0.5307 0.8799 27 1 1.4582 -1.6584 -1.4241 28 1 2.1222 -0.1365 -2.1011 29 1 3.8317 -2.0705 -1.3169 30 1 4.1904 -0.3702 -0.8852 31 1 3.1694 -2.6144 0.8535 32 1 4.1932 -1.2192 1.2945 33 1 0.7682 -2.4709 0.9199 34 1 1.4046 -2.3140 2.5748 35 1 0.1166 -1.2234 2.0094 36 1 4.0363 1.3673 4.1035 37 1 2.3869 1.2534 4.7627 38 1 2.6242 -1.8136 5.5800 39 1 3.0788 -1.3700 7.2428 40 1 1.8159 -0.4501 6.3901 41 1 5.8318 -0.1436 4.9602 42 1 5.4616 -1.3350 6.2301 43 1 4.8196 -1.5590 4.5853 44 1 5.1443 1.1183 9.8470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:54 Heat of formation + Delta-G solvation = -115.527312 kcal Electronic energy + Delta-G solvation = -22025.229489 eV Core-core repulsion = 18941.630601 eV Total energy + Delta-G solvation = -3083.598887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.99637 -39.67624 -38.22895 -36.73238 -33.88395 -32.64930 -32.05000 -28.20379 -27.97203 -27.07322 -26.67322 -26.06437 -23.29679 -21.64971 -20.98122 -19.70747 -18.36124 -17.93762 -17.80643 -17.38876 -17.14726 -15.91157 -15.58721 -15.14229 -14.98602 -14.79587 -14.68941 -14.44241 -14.15925 -13.81720 -13.72682 -13.46660 -13.29428 -13.10896 -12.63483 -12.45134 -12.43140 -12.24960 -12.02190 -11.95871 -11.87789 -11.78218 -11.53520 -11.49061 -11.44173 -11.36962 -11.19128 -11.04013 -10.65155 -10.43297 -8.35634 -6.38661 1.20953 1.35183 1.36516 1.49174 1.74745 2.31331 3.00289 3.34817 3.55685 3.70174 3.99544 4.02334 4.09093 4.22649 4.35441 4.35993 4.39733 4.51267 4.55412 4.61360 4.63880 4.76966 4.80122 4.85133 4.90044 4.92145 4.98277 4.99600 5.07085 5.08878 5.12972 5.19434 5.22678 5.28990 5.34570 5.40709 5.42577 5.53341 5.59094 5.64820 5.71130 6.22720 6.63804 6.76744 7.26674 8.81172 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.004782 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.884938 B = 5854.286628 C = 6066.905224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.051 4.051 8 C -0.137 4.137 9 C 0.457 3.543 10 O -0.549 6.549 11 O -0.345 6.345 12 C 0.105 3.895 13 C 0.039 3.961 14 C -0.135 4.135 15 C -0.143 4.143 16 C -0.525 4.525 17 H 0.029 0.971 18 C 0.024 3.976 19 N -0.941 5.941 20 Si 0.942 3.058 21 H -0.278 1.278 22 H -0.309 1.309 23 H -0.209 1.209 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -12.299 -21.125 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.052 4.052 8 C -0.194 4.194 9 C 0.302 3.698 10 O -0.440 6.440 11 O -0.261 6.261 12 C 0.031 3.969 13 C 0.038 3.962 14 C -0.193 4.193 15 C -0.199 4.199 16 C -0.563 4.563 17 H 0.047 0.953 18 C -0.175 4.175 19 N -0.580 5.580 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.238 1.238 23 H -0.133 1.133 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.408 -11.897 -20.951 24.931 hybrid contribution 0.651 0.796 1.126 1.525 sum -5.757 -11.101 -19.825 23.439 Atomic orbital electron populations 1.21889 0.93556 1.03147 1.01398 1.22052 0.96953 0.98836 0.92883 0.92040 1.22550 0.95728 1.00299 0.95979 1.22382 0.97503 1.01940 0.94287 1.22289 0.94461 1.01327 0.96945 1.21436 0.99127 0.94341 0.90324 1.22009 0.96662 0.97934 1.02775 1.24661 0.72515 0.89249 0.83344 1.90596 1.52086 1.19864 1.81407 1.86470 1.73634 1.41542 1.24425 1.22925 0.98354 0.89558 0.86076 1.18516 0.93554 0.93874 0.90218 1.22142 0.98165 0.98571 1.00395 1.22221 0.98114 0.99656 0.99950 1.20919 1.43004 0.92984 0.99387 0.95266 1.25774 0.95219 1.02017 0.94445 1.70087 1.45909 1.39138 1.02856 0.86340 0.79639 0.81645 0.75265 1.20536 1.23764 1.13326 0.89843 0.91396 0.94708 0.88871 0.90401 0.88820 0.92698 0.87960 0.92911 0.87864 0.91624 0.92282 0.93437 0.93561 0.91850 0.93421 0.94249 0.93607 0.94469 0.91009 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.00 71.98 0.58 -1.94 16 2 C -0.09 -1.84 2.70 -9.72 -0.03 -1.87 16 3 H 0.06 1.67 6.89 -2.38 -0.02 1.66 16 4 C -0.11 -1.51 6.33 31.88 0.20 -1.30 16 5 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 6 C -0.11 -2.16 6.09 31.32 0.19 -1.97 16 7 C -0.05 -1.18 0.80 -52.20 -0.04 -1.22 16 8 C -0.14 -2.50 6.90 71.98 0.50 -2.00 16 9 C 0.46 15.56 6.34 71.24 0.45 16.01 16 10 O -0.55 -22.40 15.16 21.98 0.33 -22.07 16 11 O -0.34 -12.65 8.91 -51.39 -0.46 -13.10 16 12 C 0.10 4.57 4.25 71.98 0.31 4.87 16 13 C 0.04 1.80 0.58 -52.93 -0.03 1.77 16 14 C -0.14 -5.67 7.58 71.98 0.55 -5.13 16 15 C -0.14 -5.90 7.55 71.98 0.54 -5.35 16 16 C -0.53 -29.97 8.62 25.60 0.22 -29.75 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.02 1.36 5.32 84.65 0.45 1.81 16 19 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 20 Si 0.94 43.77 22.79 68.60 1.56 45.33 16 21 H -0.28 -12.59 7.10 99.48 0.71 -11.88 16 22 H -0.31 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.21 -8.49 4.65 99.48 0.46 -8.03 16 24 H 0.08 1.08 6.39 -2.39 -0.02 1.07 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.03 0.76 7.85 -2.39 -0.02 0.74 16 27 H 0.09 0.91 8.06 -2.39 -0.02 0.89 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.10 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.10 1.21 7.64 -2.39 -0.02 1.19 16 34 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 35 H 0.06 1.14 6.71 -2.39 -0.02 1.13 16 36 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 37 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.06 2.25 7.94 -2.38 -0.02 2.23 16 39 H 0.05 2.04 4.30 -2.39 -0.01 2.03 16 40 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 41 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.56 2.25 -2.39 -0.01 1.55 16 43 H 0.07 2.52 7.68 -2.38 -0.02 2.50 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -69.03 328.06 6.55 -62.48 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.71 Total: 13.60 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.10 Total: -27.72 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.12 Total: -35.17 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.56 Total: 45.33 kcal Total: -69.03 6.55 -62.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.046 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds