Wall clock time and date at job start Mon Mar 30 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.05936 * 2 1 4 4 C 1.54269 * 110.02913 * 121.40947 * 2 1 3 5 5 C 1.54890 * 104.19367 * 142.89515 * 4 2 1 6 6 C 1.55007 * 102.75455 * 322.04551 * 5 4 2 7 7 C 1.53868 * 110.03361 * 238.57567 * 2 1 3 8 8 C 1.52994 * 110.03535 * 0.05339 * 7 2 1 9 9 C 1.50699 * 110.03216 * 121.43715 * 7 2 1 10 10 O 1.20830 * 120.00098 * 359.30656 * 9 7 2 11 11 O 1.34234 * 120.00248 * 179.04035 * 9 7 2 12 12 C 1.45201 * 116.99888 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46685 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47559 * 299.99735 * 13 12 11 15 15 C 1.53005 * 109.47195 * 59.99912 * 13 12 11 16 16 C 1.50699 * 109.46978 * 179.97438 * 13 12 11 17 17 H 1.07996 * 120.00170 * 356.86654 * 16 13 12 18 18 C 1.37879 * 120.00209 * 176.86378 * 16 13 12 19 19 N 1.31519 * 119.99939 * 5.81967 * 18 16 13 20 20 Si 1.86797 * 120.00334 * 185.81962 * 18 16 13 21 21 H 1.48494 * 109.47140 * 85.02279 * 20 18 16 22 22 H 1.48495 * 109.47270 * 205.02679 * 20 18 16 23 23 H 1.48503 * 109.47106 * 325.02682 * 20 18 16 24 24 H 1.09002 * 109.46926 * 181.42238 * 1 2 3 25 25 H 1.08997 * 109.47272 * 301.42514 * 1 2 3 26 26 H 1.08999 * 109.46784 * 61.42236 * 1 2 3 27 27 H 1.09000 * 110.49051 * 261.57519 * 4 2 1 28 28 H 1.09002 * 110.48687 * 24.08361 * 4 2 1 29 29 H 1.08997 * 110.75778 * 80.38014 * 5 4 2 30 30 H 1.09004 * 110.75401 * 203.55970 * 5 4 2 31 31 H 1.08997 * 110.51008 * 279.29407 * 6 5 4 32 32 H 1.09010 * 110.52421 * 156.61638 * 6 5 4 33 33 H 1.09002 * 109.47720 * 180.68873 * 8 7 2 34 34 H 1.09007 * 109.46882 * 300.68983 * 8 7 2 35 35 H 1.09000 * 109.47457 * 60.68674 * 8 7 2 36 36 H 1.08992 * 109.47090 * 299.99233 * 12 11 9 37 37 H 1.09000 * 109.46934 * 59.99662 * 12 11 9 38 38 H 1.09001 * 109.46563 * 53.82974 * 14 13 12 39 39 H 1.09002 * 109.46955 * 173.82487 * 14 13 12 40 40 H 1.08997 * 109.47351 * 293.83167 * 14 13 12 41 41 H 1.09008 * 109.46791 * 59.99985 * 15 13 12 42 42 H 1.09000 * 109.47098 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.46990 * 299.99964 * 15 13 12 44 44 H 0.96993 * 120.00189 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7553 1.2370 5 6 3.3136 -1.5007 0.7194 6 6 2.8871 -1.9414 -0.7042 7 6 2.0571 -0.7537 -1.2336 8 6 0.8863 -1.2660 -2.0746 9 6 2.9277 0.1562 -2.0614 10 8 3.1055 1.3005 -1.7165 11 8 3.5101 -0.3061 -3.1789 12 6 4.3346 0.6263 -3.9267 13 6 4.9097 -0.0760 -5.1584 14 6 5.7610 -1.2675 -4.7151 15 6 3.7647 -0.5692 -6.0453 16 6 5.7649 0.8918 -5.9349 17 1 5.8455 1.9196 -5.6131 18 6 6.4445 0.4652 -7.0561 19 7 6.2576 -0.7533 -7.5144 20 14 7.6306 1.6179 -7.9244 21 1 8.9601 1.5473 -7.2668 22 1 7.7602 1.2145 -9.3476 23 1 7.1142 3.0082 -7.8490 24 1 -0.3633 -1.0274 0.0255 25 1 -0.3633 0.5358 0.8769 26 1 -0.3633 0.4916 -0.9025 27 1 2.3296 -0.0534 2.0256 28 1 1.3132 -1.4641 1.5982 29 1 4.1710 -0.8291 0.6754 30 1 3.5343 -2.3659 1.3445 31 1 2.2765 -2.8431 -0.6580 32 1 3.7631 -2.1047 -1.3322 33 1 1.2696 -1.8085 -2.9389 34 1 0.2698 -1.9326 -1.4714 35 1 0.2851 -0.4220 -2.4129 36 1 3.7282 1.4752 -4.2422 37 1 5.1505 0.9773 -3.2949 38 1 5.1720 -1.9121 -4.0627 39 1 6.0804 -1.8318 -5.5913 40 1 6.6370 -0.9075 -4.1756 41 1 3.1582 0.2797 -6.3612 42 1 4.1744 -1.0691 -6.9230 43 1 3.1458 -1.2691 -5.4839 44 1 6.7359 -1.0536 -8.3029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:57 Heat of formation + Delta-G solvation = -116.930655 kcal Electronic energy + Delta-G solvation = -21960.679812 eV Core-core repulsion = 18877.020071 eV Total energy + Delta-G solvation = -3083.659741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64456 -38.31672 -36.33316 -34.80594 -31.93060 -31.40286 -30.89058 -26.06215 -25.62170 -25.48726 -25.30077 -24.82296 -21.97248 -20.74670 -18.81518 -18.38377 -16.98674 -16.38850 -15.87769 -15.73434 -14.88500 -14.72922 -14.23709 -13.99531 -13.65849 -13.27865 -13.06707 -12.90905 -12.55950 -12.02069 -11.85640 -11.68646 -11.47937 -11.31695 -11.13944 -11.03443 -10.93789 -10.79357 -10.76450 -10.70910 -10.68565 -10.39975 -10.37907 -10.18638 -9.86115 -9.81930 -9.38333 -9.26515 -8.74928 -8.35763 -6.01700 -4.11829 2.68465 3.25103 3.28893 3.35269 3.40086 4.37090 4.39362 4.49431 4.75211 5.11261 5.21038 5.24897 5.26913 5.29068 5.39416 5.45017 5.49611 5.68606 5.76850 5.82295 5.86025 5.92120 5.98847 6.00951 6.12622 6.13387 6.20795 6.24060 6.29779 6.43608 6.49327 6.78424 7.00012 7.11213 7.14133 7.18795 7.42332 7.63676 7.71591 8.04478 8.16773 8.32023 8.41483 8.87742 9.53179 11.00141 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.004394 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.052525 B = 6370.357029 C = 6387.748215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.096 0.904 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.054 4.054 8 C -0.140 4.140 9 C 0.464 3.536 10 O -0.520 6.520 11 O -0.344 6.344 12 C 0.084 3.916 13 C 0.070 3.930 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -3.777 13.703 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.154 4.154 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.197 4.197 9 C 0.307 3.693 10 O -0.410 6.410 11 O -0.260 6.260 12 C 0.011 3.989 13 C 0.070 3.930 14 C -0.184 4.184 15 C -0.186 4.186 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.132 4.132 19 N -0.519 5.519 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.513 -3.551 13.590 16.965 hybrid contribution 0.791 0.905 -0.555 1.323 sum -8.723 -2.646 13.035 15.906 Atomic orbital electron populations 1.21971 0.94671 1.01738 1.01703 1.21895 0.95885 1.01155 0.92225 0.88549 1.22425 0.97217 0.98808 0.96957 1.22549 0.97989 1.00058 0.95987 1.22493 0.99949 0.96157 0.96339 1.21119 0.94916 0.94974 0.94492 1.21974 0.96330 1.01491 0.99867 1.23434 0.78382 0.87166 0.80327 1.90570 1.60065 1.20107 1.70250 1.86510 1.58987 1.45612 1.34865 1.23632 0.91290 0.90921 0.93054 1.18233 0.92874 0.93767 0.88123 1.21732 0.97790 0.98502 1.00402 1.21779 0.96704 0.98534 1.01553 1.20926 1.27972 0.95821 1.10445 0.92575 1.24848 0.96563 0.95282 0.96539 1.69853 1.41507 1.17039 1.23518 0.86577 0.81521 0.81106 0.78610 1.20560 1.21213 1.19979 0.92263 0.92797 0.92312 0.91612 0.91434 0.91430 0.91176 0.90213 0.90186 0.91136 0.91098 0.91995 0.92746 0.92706 0.96421 0.90175 0.95649 0.95929 0.89768 0.96517 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.89 37.16 0.29 -1.11 16 2 C -0.09 -1.12 3.10 -89.50 -0.28 -1.40 16 3 H 0.10 1.40 6.40 -51.93 -0.33 1.07 16 4 C -0.12 -1.18 6.36 -25.07 -0.16 -1.33 16 5 C -0.13 -1.40 6.91 -24.67 -0.17 -1.57 16 6 C -0.11 -1.35 5.89 -25.01 -0.15 -1.50 16 7 C -0.05 -0.73 0.87 -154.55 -0.14 -0.86 16 8 C -0.14 -1.65 7.13 37.15 0.27 -1.39 16 9 C 0.46 8.46 6.50 36.01 0.23 8.69 16 10 O -0.52 -10.73 14.96 -18.75 -0.28 -11.01 16 11 O -0.34 -6.98 8.42 -39.27 -0.33 -7.31 16 12 C 0.08 1.90 4.26 37.16 0.16 2.06 16 13 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 14 C -0.13 -3.06 8.06 37.16 0.30 -2.76 16 15 C -0.13 -3.10 8.14 37.16 0.30 -2.80 16 16 C -0.51 -13.86 8.01 -34.44 -0.28 -14.13 16 17 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 18 C 0.07 1.87 5.13 -17.82 -0.09 1.78 16 19 N -0.88 -24.02 9.46 55.43 0.52 -23.50 16 20 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.50 6.70 -51.93 -0.35 0.15 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 32 H 0.08 1.10 7.63 -51.92 -0.40 0.71 16 33 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.07 0.66 6.68 -51.92 -0.35 0.31 16 35 H 0.06 0.73 6.78 -51.93 -0.35 0.38 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.02 0.38 7.50 -51.93 -0.39 -0.01 16 39 H 0.08 2.08 6.25 -51.93 -0.32 1.76 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.08 2.21 6.11 -51.93 -0.32 1.89 16 43 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -28.45 336.00 -7.55 -36.00 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.71 Total: -0.50 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 0.21 Total: -14.68 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.52 Total: -23.50 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.61 Total: -18.32 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.45 -7.55 -36.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.929 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds