Wall clock time and date at job start Mon Mar 30 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.05936 * 2 1 4 4 C 1.54269 * 110.02913 * 121.40947 * 2 1 3 5 5 C 1.54890 * 104.19367 * 142.89515 * 4 2 1 6 6 C 1.55007 * 102.75455 * 322.04551 * 5 4 2 7 7 C 1.53868 * 110.03361 * 238.57567 * 2 1 3 8 8 C 1.52994 * 110.03535 * 0.05339 * 7 2 1 9 9 C 1.50699 * 110.03216 * 121.43715 * 7 2 1 10 10 O 1.20830 * 120.00098 * 359.30656 * 9 7 2 11 11 O 1.34234 * 120.00248 * 179.04035 * 9 7 2 12 12 C 1.45201 * 116.99888 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46685 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47559 * 299.99735 * 13 12 11 15 15 C 1.53005 * 109.47195 * 59.99912 * 13 12 11 16 16 C 1.50699 * 109.46978 * 179.97438 * 13 12 11 17 17 H 1.07996 * 120.00170 * 356.86654 * 16 13 12 18 18 C 1.37879 * 120.00209 * 176.86378 * 16 13 12 19 19 N 1.31519 * 119.99939 * 5.81967 * 18 16 13 20 20 Si 1.86797 * 120.00334 * 185.81962 * 18 16 13 21 21 H 1.48494 * 109.47140 * 85.02279 * 20 18 16 22 22 H 1.48495 * 109.47270 * 205.02679 * 20 18 16 23 23 H 1.48503 * 109.47106 * 325.02682 * 20 18 16 24 24 H 1.09002 * 109.46926 * 181.42238 * 1 2 3 25 25 H 1.08997 * 109.47272 * 301.42514 * 1 2 3 26 26 H 1.08999 * 109.46784 * 61.42236 * 1 2 3 27 27 H 1.09000 * 110.49051 * 261.57519 * 4 2 1 28 28 H 1.09002 * 110.48687 * 24.08361 * 4 2 1 29 29 H 1.08997 * 110.75778 * 80.38014 * 5 4 2 30 30 H 1.09004 * 110.75401 * 203.55970 * 5 4 2 31 31 H 1.08997 * 110.51008 * 279.29407 * 6 5 4 32 32 H 1.09010 * 110.52421 * 156.61638 * 6 5 4 33 33 H 1.09002 * 109.47720 * 180.68873 * 8 7 2 34 34 H 1.09007 * 109.46882 * 300.68983 * 8 7 2 35 35 H 1.09000 * 109.47457 * 60.68674 * 8 7 2 36 36 H 1.08992 * 109.47090 * 299.99233 * 12 11 9 37 37 H 1.09000 * 109.46934 * 59.99662 * 12 11 9 38 38 H 1.09001 * 109.46563 * 53.82974 * 14 13 12 39 39 H 1.09002 * 109.46955 * 173.82487 * 14 13 12 40 40 H 1.08997 * 109.47351 * 293.83167 * 14 13 12 41 41 H 1.09008 * 109.46791 * 59.99985 * 15 13 12 42 42 H 1.09000 * 109.47098 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.46990 * 299.99964 * 15 13 12 44 44 H 0.96993 * 120.00189 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7553 1.2370 5 6 3.3136 -1.5007 0.7194 6 6 2.8871 -1.9414 -0.7042 7 6 2.0571 -0.7537 -1.2336 8 6 0.8863 -1.2660 -2.0746 9 6 2.9277 0.1562 -2.0614 10 8 3.1055 1.3005 -1.7165 11 8 3.5101 -0.3061 -3.1789 12 6 4.3346 0.6263 -3.9267 13 6 4.9097 -0.0760 -5.1584 14 6 5.7610 -1.2675 -4.7151 15 6 3.7647 -0.5692 -6.0453 16 6 5.7649 0.8918 -5.9349 17 1 5.8455 1.9196 -5.6131 18 6 6.4445 0.4652 -7.0561 19 7 6.2576 -0.7533 -7.5144 20 14 7.6306 1.6179 -7.9244 21 1 8.9601 1.5473 -7.2668 22 1 7.7602 1.2145 -9.3476 23 1 7.1142 3.0082 -7.8490 24 1 -0.3633 -1.0274 0.0255 25 1 -0.3633 0.5358 0.8769 26 1 -0.3633 0.4916 -0.9025 27 1 2.3296 -0.0534 2.0256 28 1 1.3132 -1.4641 1.5982 29 1 4.1710 -0.8291 0.6754 30 1 3.5343 -2.3659 1.3445 31 1 2.2765 -2.8431 -0.6580 32 1 3.7631 -2.1047 -1.3322 33 1 1.2696 -1.8085 -2.9389 34 1 0.2698 -1.9326 -1.4714 35 1 0.2851 -0.4220 -2.4129 36 1 3.7282 1.4752 -4.2422 37 1 5.1505 0.9773 -3.2949 38 1 5.1720 -1.9121 -4.0627 39 1 6.0804 -1.8318 -5.5913 40 1 6.6370 -0.9075 -4.1756 41 1 3.1582 0.2797 -6.3612 42 1 4.1744 -1.0691 -6.9230 43 1 3.1458 -1.2691 -5.4839 44 1 6.7359 -1.0536 -8.3029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:57 Heat of formation + Delta-G solvation = -129.821734 kcal Electronic energy + Delta-G solvation = -21961.238811 eV Core-core repulsion = 18877.020071 eV Total energy + Delta-G solvation = -3084.218740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99584 -39.59885 -38.02919 -36.61935 -33.34417 -32.77737 -31.96155 -27.74784 -27.59986 -27.20200 -26.35121 -26.12187 -23.28597 -21.76203 -20.72981 -19.58474 -18.30395 -17.85722 -17.70725 -17.38270 -16.71545 -15.86596 -15.49542 -15.03972 -14.79831 -14.63440 -14.57355 -14.52659 -13.94188 -13.54166 -13.35815 -13.11493 -12.89858 -12.80685 -12.66332 -12.52456 -12.34973 -12.29493 -12.15822 -11.91326 -11.75270 -11.73979 -11.68568 -11.54962 -11.40271 -11.30292 -11.28238 -11.02662 -10.76144 -10.41248 -8.07043 -6.23951 1.21805 1.41990 1.43387 1.51607 1.80874 2.44138 3.16533 3.39650 3.55189 3.71416 4.02093 4.21986 4.23204 4.25777 4.36538 4.38483 4.53367 4.56393 4.59669 4.62601 4.79857 4.83933 4.89508 5.00835 5.02485 5.02771 5.07032 5.15415 5.16406 5.19113 5.20848 5.31683 5.32364 5.37618 5.43520 5.55989 5.60142 5.61924 5.68179 6.03969 6.15031 6.34650 6.75587 6.83055 7.43524 8.93263 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.004394 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.052525 B = 6370.357029 C = 6387.748215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.129 4.129 6 C -0.111 4.111 7 C -0.053 4.053 8 C -0.137 4.137 9 C 0.457 3.543 10 O -0.550 6.550 11 O -0.347 6.347 12 C 0.097 3.903 13 C 0.062 3.938 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.538 4.538 17 H 0.046 0.954 18 C 0.031 3.969 19 N -0.897 5.897 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 -4.976 15.021 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.054 4.054 8 C -0.194 4.194 9 C 0.302 3.698 10 O -0.441 6.441 11 O -0.263 6.263 12 C 0.023 3.977 13 C 0.062 3.938 14 C -0.172 4.172 15 C -0.174 4.174 16 C -0.576 4.576 17 H 0.064 0.936 18 C -0.170 4.170 19 N -0.535 5.535 20 Si 0.777 3.223 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.752 -4.755 14.917 18.993 hybrid contribution 1.156 1.292 -0.927 1.966 sum -9.596 -3.463 13.990 17.314 Atomic orbital electron populations 1.21962 0.92555 1.03304 1.01886 1.21918 0.97642 0.99390 0.92431 0.91823 1.22430 0.97248 0.99076 0.95916 1.22570 0.97606 1.00637 0.95822 1.22560 0.99348 0.96559 0.96400 1.21385 0.94765 0.94762 0.94445 1.22025 0.95806 1.01830 0.99768 1.24605 0.77965 0.87684 0.79570 1.90556 1.61098 1.21740 1.70686 1.86511 1.58981 1.44961 1.35828 1.23200 0.91152 0.90744 0.92592 1.18258 0.93008 0.93737 0.88828 1.21570 0.97655 0.98256 0.99684 1.21617 0.96537 0.98416 1.00794 1.21170 1.29141 0.95914 1.11353 0.93557 1.25492 0.97745 0.96683 0.97055 1.69953 1.41826 1.18036 1.23689 0.85680 0.79553 0.79275 0.77762 1.20184 1.20525 1.19964 0.89953 0.91605 0.93229 0.91302 0.88602 0.93870 0.88682 0.87124 0.92450 0.92274 0.87514 0.92373 0.93796 0.93790 0.94744 0.91999 0.96300 0.96352 0.91725 0.94887 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.89 71.98 0.57 -1.75 16 2 C -0.10 -2.14 3.10 -10.07 -0.03 -2.17 16 3 H 0.06 1.86 6.40 -2.39 -0.02 1.85 16 4 C -0.11 -1.89 6.36 31.67 0.20 -1.68 16 5 C -0.13 -2.53 6.91 31.93 0.22 -2.31 16 6 C -0.11 -2.45 5.89 31.71 0.19 -2.26 16 7 C -0.05 -1.35 0.87 -52.21 -0.05 -1.40 16 8 C -0.14 -2.92 7.13 71.98 0.51 -2.41 16 9 C 0.46 16.85 6.50 71.24 0.46 17.31 16 10 O -0.55 -23.43 14.96 21.95 0.33 -23.10 16 11 O -0.35 -14.24 8.42 -51.45 -0.43 -14.67 16 12 C 0.10 4.50 4.26 71.98 0.31 4.81 16 13 C 0.06 3.12 0.58 -52.93 -0.03 3.09 16 14 C -0.11 -5.56 8.06 71.98 0.58 -4.98 16 15 C -0.12 -5.66 8.14 71.98 0.59 -5.08 16 16 C -0.54 -29.53 8.01 25.60 0.20 -29.32 16 17 H 0.05 2.56 7.75 -2.91 -0.02 2.54 16 18 C 0.03 1.66 5.13 84.65 0.43 2.09 16 19 N -0.90 -49.17 9.46 21.45 0.20 -48.96 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H 0.08 0.99 6.70 -2.39 -0.02 0.98 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.91 6.76 -2.39 -0.02 0.90 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.16 7.83 -2.39 -0.02 1.14 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.77 7.84 -2.39 -0.02 1.75 16 32 H 0.06 1.53 7.63 -2.38 -0.02 1.51 16 33 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 34 H 0.11 1.51 6.68 -2.38 -0.02 1.49 16 35 H 0.06 1.28 6.78 -2.39 -0.02 1.26 16 36 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.04 2.10 8.13 -2.39 -0.02 2.08 16 38 H 0.03 1.51 7.50 -2.39 -0.02 1.49 16 39 H 0.06 3.24 6.25 -2.39 -0.01 3.22 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 3.41 6.11 -2.39 -0.01 3.40 16 43 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 44 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -62.11 336.00 7.23 -54.88 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.95 Total: 12.78 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.16 Total: -26.06 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.20 Total: -48.96 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.11 Total: -37.77 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -62.11 7.23 -54.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.945 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds