Wall clock time and date at job start Mon Mar 30 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.01736 * 2 1 4 4 C 1.54275 * 110.06859 * 238.58947 * 2 1 3 5 5 C 1.54897 * 104.19188 * 217.08256 * 4 2 1 6 6 C 1.54887 * 102.75141 * 37.93977 * 5 4 2 7 7 C 1.53874 * 110.03768 * 121.40032 * 2 1 3 8 8 C 1.52999 * 110.03277 * 238.66764 * 7 2 1 9 9 C 1.50703 * 110.02975 * 0.04243 * 7 2 1 10 10 O 1.20826 * 120.00084 * 246.84155 * 9 7 2 11 11 O 1.34232 * 119.99964 * 66.84500 * 9 7 2 12 12 C 1.45192 * 117.00276 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47244 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47686 * 59.99512 * 13 12 11 15 15 C 1.53005 * 109.47198 * 299.99464 * 13 12 11 16 16 C 1.50705 * 109.47428 * 179.97438 * 13 12 11 17 17 H 1.08009 * 119.99641 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00455 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99920 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00218 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47171 * 89.99846 * 20 18 16 22 22 H 1.48508 * 109.47157 * 210.00107 * 20 18 16 23 23 H 1.48502 * 109.47066 * 330.00099 * 20 18 16 24 24 H 1.09001 * 109.46616 * 293.18163 * 1 2 3 25 25 H 1.08994 * 109.47615 * 53.18853 * 1 2 3 26 26 H 1.09005 * 109.46808 * 173.18860 * 1 2 3 27 27 H 1.09002 * 110.48637 * 335.75375 * 4 2 1 28 28 H 1.08993 * 110.48842 * 98.27236 * 4 2 1 29 29 H 1.08995 * 110.75378 * 156.25949 * 5 4 2 30 30 H 1.09002 * 110.75396 * 279.43728 * 5 4 2 31 31 H 1.09002 * 110.48530 * 203.37763 * 6 5 4 32 32 H 1.08998 * 110.48105 * 80.73453 * 6 5 4 33 33 H 1.08997 * 109.47289 * 180.68826 * 8 7 2 34 34 H 1.09002 * 109.46651 * 300.68860 * 8 7 2 35 35 H 1.09000 * 109.47090 * 60.68072 * 8 7 2 36 36 H 1.08997 * 109.47510 * 59.99484 * 12 11 9 37 37 H 1.09010 * 109.46915 * 299.99521 * 12 11 9 38 38 H 1.08998 * 109.47322 * 300.00437 * 14 13 12 39 39 H 1.09000 * 109.47631 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.47116 * 59.99701 * 14 13 12 41 41 H 1.08997 * 109.47674 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47051 * 300.00180 * 15 13 12 43 43 H 1.08997 * 109.46925 * 59.99887 * 15 13 12 44 44 H 0.96998 * 120.00160 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7552 -1.2367 5 6 3.3149 -1.4996 -0.7184 6 6 2.8886 -1.9397 0.7041 7 6 2.0572 -0.7532 1.2339 8 6 2.9390 0.1717 2.0753 9 6 0.9039 -1.2595 2.0613 10 8 0.7058 -0.8054 3.1634 11 8 0.0968 -2.2150 1.5741 12 6 -0.9940 -2.6540 2.4258 13 6 -1.7988 -3.7379 1.7059 14 6 -0.8873 -4.9258 1.3914 15 6 -2.3658 -3.1712 0.4027 16 6 -2.9306 -4.1941 2.5902 17 1 -3.0625 -3.7551 3.5682 18 6 -3.7978 -5.1718 2.1509 19 7 -3.6376 -5.7060 0.9598 20 14 -5.2003 -5.7377 3.2473 21 1 -6.4009 -4.9041 2.9852 22 1 -5.5124 -7.1603 2.9571 23 1 -4.8024 -5.5987 4.6713 24 1 -0.3632 0.4046 0.9447 25 1 -0.3634 0.6157 -0.8227 26 1 -0.3633 -1.0205 -0.1219 27 1 1.3158 -1.4663 -1.5967 28 1 2.3283 -0.0534 -2.0261 29 1 3.5346 -2.3666 -1.3414 30 1 4.1726 -0.8282 -0.6773 31 1 3.7647 -2.1022 1.3318 32 1 2.2789 -2.8420 0.6575 33 1 3.3171 -0.3741 2.9396 34 1 3.7765 0.5227 1.4723 35 1 2.3516 1.0255 2.4130 36 1 -1.6437 -1.8079 2.6495 37 1 -0.5901 -3.0574 3.3545 38 1 -0.0685 -4.5963 0.7520 39 1 -1.4606 -5.6978 0.8781 40 1 -0.4833 -5.3296 2.3198 41 1 -2.9395 -3.9432 -0.1101 42 1 -3.0153 -2.3249 0.6267 43 1 -1.5470 -2.8416 -0.2368 44 1 -4.2474 -6.3941 0.6508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:00 Heat of formation + Delta-G solvation = -119.139546 kcal Electronic energy + Delta-G solvation = -22390.381597 eV Core-core repulsion = 19306.626072 eV Total energy + Delta-G solvation = -3083.755526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68090 -38.11040 -36.46377 -34.79234 -31.37679 -31.31349 -31.10643 -26.75224 -25.63791 -25.54583 -25.12767 -24.05603 -22.00980 -20.67586 -18.99043 -18.72821 -16.84500 -16.04672 -15.81830 -15.71907 -15.14740 -14.75246 -14.19451 -13.62952 -13.26963 -13.12579 -12.95484 -12.59526 -12.49288 -12.29775 -12.05017 -11.95133 -11.47839 -11.28230 -11.12292 -11.03576 -10.95758 -10.73438 -10.69683 -10.57709 -10.51556 -10.49189 -10.39240 -10.17484 -9.82887 -9.77812 -9.36180 -9.25777 -8.74066 -8.36656 -6.01161 -4.12504 2.70686 3.27613 3.28433 3.35164 3.40744 4.38842 4.49085 4.51047 4.68166 5.17001 5.21570 5.25274 5.26562 5.40989 5.42192 5.54599 5.59873 5.75074 5.83738 5.86449 5.94479 6.04662 6.08049 6.10104 6.13930 6.16369 6.21448 6.29765 6.36674 6.50492 6.54356 6.79610 7.00117 7.12630 7.15675 7.20707 7.42912 7.63725 7.71027 8.06591 8.17717 8.34933 8.43006 8.87476 9.52997 10.99966 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.005123 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.956522 B = 5464.568106 C = 5725.504660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 H 0.078 0.922 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.058 4.058 8 C -0.127 4.127 9 C 0.469 3.531 10 O -0.524 6.524 11 O -0.343 6.343 12 C 0.083 3.917 13 C 0.071 3.929 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.083 0.917 40 H 0.021 0.979 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 8.795 -4.657 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.096 4.096 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.059 4.059 8 C -0.184 4.184 9 C 0.312 3.688 10 O -0.414 6.414 11 O -0.258 6.258 12 C 0.010 3.990 13 C 0.071 3.929 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.133 4.133 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.175 8.750 -4.438 15.636 hybrid contribution -0.937 -0.221 0.908 1.324 sum 11.238 8.529 -3.530 14.543 Atomic orbital electron populations 1.22258 0.94155 1.04462 1.01393 1.21767 0.96526 0.98731 0.92560 0.90383 1.22482 0.97568 0.99099 0.96536 1.22455 0.97545 0.99984 0.95785 1.22519 0.99140 0.97280 0.96394 1.21302 0.92318 0.96979 0.95327 1.21740 0.98515 0.99032 0.99098 1.23314 0.82951 0.77258 0.85230 1.90602 1.72045 1.57194 1.21582 1.86547 1.39996 1.50923 1.48363 1.23619 0.84576 0.98061 0.92759 1.18214 0.91862 0.89367 0.93447 1.21757 0.97291 1.00808 0.98742 1.21775 0.98607 1.00024 0.98162 1.20950 1.11232 1.21099 1.01660 0.92615 1.24846 0.97456 0.95904 0.95108 1.69831 1.37386 1.27221 1.17629 0.86559 0.82426 0.77876 0.80935 1.20655 1.21154 1.19931 0.93134 0.92436 0.89475 0.90564 0.91613 0.91144 0.91618 0.91137 0.89599 0.92045 0.91584 0.91806 0.92822 0.92847 0.96460 0.89812 0.95943 0.89814 0.95940 0.96380 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 7.88 37.16 0.29 -2.07 16 2 C -0.08 -0.94 3.15 -89.50 -0.28 -1.22 16 3 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 4 C -0.12 -1.27 6.36 -25.06 -0.16 -1.43 16 5 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 6 C -0.12 -1.41 5.87 -25.08 -0.15 -1.56 16 7 C -0.06 -0.79 0.88 -154.54 -0.14 -0.93 16 8 C -0.13 -1.51 7.48 37.16 0.28 -1.23 16 9 C 0.47 8.48 4.71 36.01 0.17 8.65 16 10 O -0.52 -10.88 15.79 -18.75 -0.30 -11.17 16 11 O -0.34 -6.74 6.04 -39.26 -0.24 -6.98 16 12 C 0.08 1.85 4.26 37.16 0.16 2.01 16 13 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 14 C -0.13 -3.07 8.11 37.15 0.30 -2.77 16 15 C -0.13 -3.04 8.11 37.16 0.30 -2.74 16 16 C -0.51 -13.71 8.01 -34.44 -0.28 -13.98 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 19 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.05 0.80 7.21 -51.93 -0.37 0.42 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.43 5.33 -51.93 -0.28 1.16 16 27 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 32 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.05 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.38 6.83 -51.93 -0.35 0.02 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -28.17 334.77 -7.65 -35.82 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.81 Total: 0.07 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 0.15 Total: -15.25 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.52 Total: -23.41 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.53 Total: -18.16 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.17 -7.65 -35.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.318 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds