Wall clock time and date at job start Mon Mar 30 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.01736 * 2 1 4 4 C 1.54275 * 110.06859 * 238.58947 * 2 1 3 5 5 C 1.54897 * 104.19188 * 217.08256 * 4 2 1 6 6 C 1.54887 * 102.75141 * 37.93977 * 5 4 2 7 7 C 1.53874 * 110.03768 * 121.40032 * 2 1 3 8 8 C 1.52999 * 110.03277 * 238.66764 * 7 2 1 9 9 C 1.50703 * 110.02975 * 0.04243 * 7 2 1 10 10 O 1.20826 * 120.00084 * 246.84155 * 9 7 2 11 11 O 1.34232 * 119.99964 * 66.84500 * 9 7 2 12 12 C 1.45192 * 117.00276 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47244 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47686 * 59.99512 * 13 12 11 15 15 C 1.53005 * 109.47198 * 299.99464 * 13 12 11 16 16 C 1.50705 * 109.47428 * 179.97438 * 13 12 11 17 17 H 1.08009 * 119.99641 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00455 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99920 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00218 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47171 * 89.99846 * 20 18 16 22 22 H 1.48508 * 109.47157 * 210.00107 * 20 18 16 23 23 H 1.48502 * 109.47066 * 330.00099 * 20 18 16 24 24 H 1.09001 * 109.46616 * 293.18163 * 1 2 3 25 25 H 1.08994 * 109.47615 * 53.18853 * 1 2 3 26 26 H 1.09005 * 109.46808 * 173.18860 * 1 2 3 27 27 H 1.09002 * 110.48637 * 335.75375 * 4 2 1 28 28 H 1.08993 * 110.48842 * 98.27236 * 4 2 1 29 29 H 1.08995 * 110.75378 * 156.25949 * 5 4 2 30 30 H 1.09002 * 110.75396 * 279.43728 * 5 4 2 31 31 H 1.09002 * 110.48530 * 203.37763 * 6 5 4 32 32 H 1.08998 * 110.48105 * 80.73453 * 6 5 4 33 33 H 1.08997 * 109.47289 * 180.68826 * 8 7 2 34 34 H 1.09002 * 109.46651 * 300.68860 * 8 7 2 35 35 H 1.09000 * 109.47090 * 60.68072 * 8 7 2 36 36 H 1.08997 * 109.47510 * 59.99484 * 12 11 9 37 37 H 1.09010 * 109.46915 * 299.99521 * 12 11 9 38 38 H 1.08998 * 109.47322 * 300.00437 * 14 13 12 39 39 H 1.09000 * 109.47631 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.47116 * 59.99701 * 14 13 12 41 41 H 1.08997 * 109.47674 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47051 * 300.00180 * 15 13 12 43 43 H 1.08997 * 109.46925 * 59.99887 * 15 13 12 44 44 H 0.96998 * 120.00160 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7552 -1.2367 5 6 3.3149 -1.4996 -0.7184 6 6 2.8886 -1.9397 0.7041 7 6 2.0572 -0.7532 1.2339 8 6 2.9390 0.1717 2.0753 9 6 0.9039 -1.2595 2.0613 10 8 0.7058 -0.8054 3.1634 11 8 0.0968 -2.2150 1.5741 12 6 -0.9940 -2.6540 2.4258 13 6 -1.7988 -3.7379 1.7059 14 6 -0.8873 -4.9258 1.3914 15 6 -2.3658 -3.1712 0.4027 16 6 -2.9306 -4.1941 2.5902 17 1 -3.0625 -3.7551 3.5682 18 6 -3.7978 -5.1718 2.1509 19 7 -3.6376 -5.7060 0.9598 20 14 -5.2003 -5.7377 3.2473 21 1 -6.4009 -4.9041 2.9852 22 1 -5.5124 -7.1603 2.9571 23 1 -4.8024 -5.5987 4.6713 24 1 -0.3632 0.4046 0.9447 25 1 -0.3634 0.6157 -0.8227 26 1 -0.3633 -1.0205 -0.1219 27 1 1.3158 -1.4663 -1.5967 28 1 2.3283 -0.0534 -2.0261 29 1 3.5346 -2.3666 -1.3414 30 1 4.1726 -0.8282 -0.6773 31 1 3.7647 -2.1022 1.3318 32 1 2.2789 -2.8420 0.6575 33 1 3.3171 -0.3741 2.9396 34 1 3.7765 0.5227 1.4723 35 1 2.3516 1.0255 2.4130 36 1 -1.6437 -1.8079 2.6495 37 1 -0.5901 -3.0574 3.3545 38 1 -0.0685 -4.5963 0.7520 39 1 -1.4606 -5.6978 0.8781 40 1 -0.4833 -5.3296 2.3198 41 1 -2.9395 -3.9432 -0.1101 42 1 -3.0153 -2.3249 0.6267 43 1 -1.5470 -2.8416 -0.2368 44 1 -4.2474 -6.3941 0.6508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:59 Heat of formation + Delta-G solvation = -131.680938 kcal Electronic energy + Delta-G solvation = -22390.925433 eV Core-core repulsion = 19306.626072 eV Total energy + Delta-G solvation = -3084.299361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04485 -39.36261 -38.15462 -36.60286 -33.27425 -32.38021 -32.13393 -28.10453 -27.59054 -27.31332 -26.78823 -25.22786 -23.30421 -21.54756 -20.77900 -20.21591 -18.30839 -17.79030 -17.39313 -17.20457 -16.62262 -16.21828 -15.36035 -15.02358 -14.79808 -14.65054 -14.44032 -13.84927 -13.70127 -13.54978 -13.43833 -13.28249 -13.14920 -12.96251 -12.80940 -12.64350 -12.48790 -12.33347 -12.14232 -11.86176 -11.73315 -11.70235 -11.54079 -11.51312 -11.40519 -11.34981 -11.19736 -11.02495 -10.74209 -10.41388 -8.05884 -6.23994 1.25804 1.41541 1.43224 1.52071 1.85331 2.44347 3.17306 3.51010 3.54989 3.57350 4.04608 4.24117 4.26691 4.29417 4.31630 4.37066 4.51272 4.58303 4.59761 4.65026 4.81758 4.85718 4.90950 4.97137 4.99362 5.03572 5.08087 5.15159 5.18951 5.20702 5.28193 5.30587 5.31497 5.36703 5.43933 5.58385 5.60783 5.63648 5.70584 6.07162 6.17086 6.36371 6.77711 6.86690 7.43949 8.93674 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.005123 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.956522 B = 5464.568106 C = 5725.504660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 H 0.103 0.897 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.057 4.057 8 C -0.124 4.124 9 C 0.463 3.537 10 O -0.556 6.556 11 O -0.342 6.342 12 C 0.096 3.904 13 C 0.064 3.936 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.951 3.049 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.026 0.974 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.063 0.937 42 H 0.016 0.984 43 H 0.034 0.966 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 9.730 -5.751 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.093 4.093 3 H 0.122 0.878 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.156 4.156 7 C -0.058 4.058 8 C -0.181 4.181 9 C 0.309 3.691 10 O -0.447 6.447 11 O -0.257 6.257 12 C 0.023 3.977 13 C 0.064 3.936 14 C -0.174 4.174 15 C -0.172 4.172 16 C -0.574 4.574 17 H 0.063 0.937 18 C -0.170 4.170 19 N -0.536 5.536 20 Si 0.777 3.223 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.874 9.687 -5.544 17.806 hybrid contribution -1.448 -0.480 1.251 1.973 sum 12.426 9.207 -4.293 16.050 Atomic orbital electron populations 1.22215 0.96118 1.02927 1.00854 1.21857 0.94771 1.00174 0.92524 0.87841 1.22482 0.97461 0.99189 0.96331 1.22462 0.97873 1.00718 0.93746 1.22557 0.98952 0.95535 0.98523 1.21566 0.90706 0.98053 0.95500 1.21779 0.99051 0.98055 0.99185 1.24443 0.83250 0.76032 0.85379 1.90582 1.72923 1.58002 1.23227 1.86567 1.39592 1.51823 1.47727 1.23165 0.85166 0.97038 0.92354 1.18223 0.91798 0.90079 0.93511 1.21595 0.97294 1.00008 0.98471 1.21594 0.98695 0.98957 0.97922 1.21197 1.12595 1.21801 1.01770 0.93659 1.25484 0.99382 0.95886 0.96288 1.69934 1.37939 1.27258 1.18501 0.85669 0.79771 0.77612 0.79231 1.20244 1.20484 1.19985 0.95509 0.90457 0.92082 0.92319 0.88977 0.90332 0.88959 0.89654 0.92170 0.92862 0.87865 0.92767 0.94016 0.94056 0.94868 0.91767 0.96417 0.91847 0.96474 0.94706 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 7.88 71.98 0.57 -3.99 16 2 C -0.07 -1.64 3.15 -10.07 -0.03 -1.67 16 3 H 0.10 1.79 7.67 -2.39 -0.02 1.77 16 4 C -0.12 -2.11 6.36 31.67 0.20 -1.91 16 5 C -0.11 -1.76 6.91 31.89 0.22 -1.54 16 6 C -0.12 -2.62 5.87 31.67 0.19 -2.43 16 7 C -0.06 -1.46 0.88 -52.20 -0.05 -1.51 16 8 C -0.12 -2.64 7.48 71.98 0.54 -2.10 16 9 C 0.46 16.88 4.71 71.24 0.34 17.21 16 10 O -0.56 -23.58 15.79 21.96 0.35 -23.23 16 11 O -0.34 -13.71 6.04 -51.44 -0.31 -14.02 16 12 C 0.10 4.46 4.26 71.98 0.31 4.76 16 13 C 0.06 3.20 0.58 -52.93 -0.03 3.17 16 14 C -0.12 -5.64 8.11 71.98 0.58 -5.05 16 15 C -0.11 -5.51 8.11 71.98 0.58 -4.93 16 16 C -0.54 -29.34 8.01 25.60 0.21 -29.14 16 17 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 18 C 0.03 1.60 5.15 84.65 0.44 2.04 16 19 N -0.90 -49.13 9.35 21.45 0.20 -48.93 16 20 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H 0.03 0.84 7.21 -2.39 -0.02 0.82 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 2.01 5.33 -2.38 -0.01 2.00 16 27 H 0.06 1.28 7.76 -2.39 -0.02 1.26 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.62 7.84 -2.39 -0.02 1.60 16 32 H 0.06 1.65 7.30 -2.39 -0.02 1.63 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 36 H 0.04 1.99 8.13 -2.39 -0.02 1.97 16 37 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 39 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 40 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 42 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.03 1.51 6.83 -2.39 -0.02 1.49 16 44 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -61.71 334.77 7.27 -54.44 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.95 Total: 13.70 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 4.05 Total: -27.08 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.20 Total: -48.93 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: 0.04 Total: -37.25 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -61.71 7.27 -54.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.240 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds