Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.05483 * 53.05375 * 4 3 2 6 6 C 1.54269 * 110.03047 * 291.64292 * 4 3 2 7 7 C 1.54895 * 104.19173 * 217.10599 * 6 4 3 8 8 C 1.54885 * 102.75034 * 37.93917 * 7 6 4 9 9 C 1.53867 * 110.03400 * 174.47322 * 4 3 2 10 10 H 1.08998 * 110.07384 * 238.59220 * 9 4 3 11 11 C 1.50706 * 110.03266 * 0.02562 * 9 4 3 12 12 O 1.20825 * 120.00161 * 83.66460 * 11 9 4 13 13 O 1.34231 * 119.99534 * 263.66785 * 11 9 4 14 14 C 1.45205 * 116.99712 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47014 * 329.99247 * 14 13 11 16 16 C 1.50704 * 109.47055 * 209.99740 * 14 13 11 17 17 H 1.08001 * 119.99713 * 270.99862 * 16 14 13 18 18 C 1.37875 * 119.99867 * 90.99318 * 16 14 13 19 19 N 1.31516 * 120.00054 * 352.76087 * 18 16 14 20 20 Si 1.86802 * 119.99790 * 172.75601 * 18 16 14 21 21 H 1.48498 * 109.46905 * 60.00346 * 20 18 16 22 22 H 1.48496 * 109.47193 * 300.00290 * 20 18 16 23 23 H 1.48498 * 109.46916 * 180.02562 * 20 18 16 24 24 C 1.53002 * 109.47329 * 89.99670 * 14 13 11 25 25 C 1.53003 * 109.46754 * 295.98602 * 24 14 13 26 26 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47270 * 300.00586 * 1 2 3 28 28 H 1.09000 * 109.47040 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.47270 * 239.99414 * 2 1 3 30 30 H 1.09000 * 109.47040 * 119.99583 * 2 1 3 31 31 H 1.09000 * 109.47454 * 59.99527 * 3 2 1 32 32 H 1.09000 * 109.46750 * 299.99761 * 3 2 1 33 33 H 1.08996 * 110.48880 * 98.42731 * 6 4 3 34 34 H 1.08998 * 110.48345 * 335.77586 * 6 4 3 35 35 H 1.09000 * 110.75419 * 279.62443 * 7 6 4 36 36 H 1.09000 * 110.91413 * 156.32942 * 7 6 4 37 37 H 1.09003 * 110.48686 * 203.37924 * 8 7 6 38 38 H 1.09004 * 110.48631 * 80.73697 * 8 7 6 39 39 H 0.96997 * 120.00003 * 3.32860 * 19 18 16 40 40 H 1.08997 * 109.47064 * 55.98324 * 24 14 13 41 41 H 1.08999 * 109.46879 * 175.99363 * 24 14 13 42 42 H 1.08992 * 109.47601 * 300.00222 * 25 24 14 43 43 H 1.08999 * 109.46806 * 60.00717 * 25 24 14 44 44 H 1.09003 * 109.46813 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9441 0.8270 -0.8174 6 6 4.0978 0.9082 1.3481 7 6 5.3529 1.7700 1.6330 8 6 4.9270 3.1713 1.1292 9 6 4.0972 2.8813 -0.1386 10 1 4.7269 2.9650 -1.0243 11 6 2.9438 3.8469 -0.2320 12 8 2.4072 4.2462 0.7742 13 8 2.5128 4.2633 -1.4331 14 6 1.3981 5.1937 -1.4472 15 1 0.7629 5.0128 -0.5801 16 6 0.5956 4.9971 -2.7076 17 1 0.8511 5.5465 -3.6016 18 6 -0.4646 4.1157 -2.7193 19 7 -0.6887 3.3428 -1.6791 20 14 -1.5828 4.0196 -4.2126 21 1 -0.7846 3.6364 -5.4047 22 1 -2.2142 5.3435 -4.4442 23 1 -2.6387 3.0027 -3.9756 24 6 1.9299 6.6275 -1.3997 25 6 2.6596 6.8571 -0.0746 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.3691 -0.1439 1.2614 34 1 3.3533 1.0479 2.1319 35 1 6.2105 1.4013 1.0702 36 1 5.5745 1.7940 2.7000 37 1 5.8034 3.7707 0.8827 38 1 4.3163 3.6764 1.8776 39 1 -0.1380 3.4265 -0.8850 40 1 2.6212 6.7863 -2.2274 41 1 1.0976 7.3266 -1.4820 42 1 1.9684 6.6983 0.7531 43 1 3.4918 6.1581 0.0077 44 1 3.0380 7.8788 -0.0405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835339423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -138.769697 kcal Electronic energy + Delta-G solvation = -22581.622925 eV Core-core repulsion = 19497.016172 eV Total energy + Delta-G solvation = -3084.606753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10544 -37.79238 -35.45899 -34.00855 -33.25870 -32.01366 -29.58458 -29.02438 -26.83864 -24.78402 -23.23904 -22.02150 -21.31737 -20.21743 -20.11871 -18.46988 -17.20621 -16.66758 -15.78758 -15.34612 -14.93397 -14.54362 -14.04460 -13.81970 -13.38553 -13.26691 -13.09080 -12.75842 -12.42127 -12.03060 -11.92546 -11.52973 -11.48562 -11.22236 -11.02075 -10.90705 -10.86819 -10.79794 -10.69049 -10.54067 -10.44549 -10.34003 -10.17682 -10.06156 -10.03181 -9.87329 -9.33790 -9.04688 -8.65894 -8.47610 -6.59785 -4.37222 3.25017 3.35278 3.36435 3.56301 3.90548 4.38665 4.70007 4.78932 4.96754 5.24126 5.34410 5.48515 5.58777 5.66147 5.73303 5.77312 5.77419 5.83081 5.85824 5.90683 5.98201 6.03081 6.03939 6.10914 6.22136 6.24524 6.31074 6.39929 6.47309 6.52094 6.53035 6.57081 6.70795 6.80425 6.81627 6.84125 6.95659 7.00344 7.15545 7.78295 8.04628 8.26955 8.62977 9.03552 9.40637 10.78020 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.008150 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.733359 B = 3434.828879 C = 4765.310969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.129 4.129 4 C -0.074 4.074 5 H 0.077 0.923 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.094 4.094 10 H 0.091 0.909 11 C 0.462 3.538 12 O -0.530 6.530 13 O -0.360 6.360 14 C 0.189 3.811 15 H 0.052 0.948 16 C -0.590 4.590 17 H 0.059 0.941 18 C 0.031 3.969 19 N -0.878 5.878 20 Si 1.072 2.928 21 H -0.285 1.285 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.124 4.124 25 C -0.146 4.146 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.277 0.723 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -4.313 4.027 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.166 4.166 4 C -0.093 4.093 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.114 4.114 10 H 0.109 0.891 11 C 0.306 3.694 12 O -0.422 6.422 13 O -0.277 6.277 14 C 0.138 3.862 15 H 0.070 0.930 16 C -0.627 4.627 17 H 0.077 0.923 18 C -0.178 4.178 19 N -0.512 5.512 20 Si 0.899 3.101 21 H -0.211 1.211 22 H -0.211 1.211 23 H -0.205 1.205 24 C -0.162 4.162 25 C -0.203 4.203 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.038 -4.952 3.669 9.355 hybrid contribution 1.382 0.904 0.605 1.758 sum 8.420 -4.049 4.273 10.273 Atomic orbital electron populations 1.21757 0.95421 1.00375 1.03400 1.21421 0.96401 0.96542 1.00623 1.21982 0.93148 0.97400 1.04073 1.21679 0.96589 0.93067 0.97925 0.90505 1.22455 0.97133 0.98702 0.97098 1.22464 0.97700 0.95162 1.00597 1.22397 0.98849 0.97512 0.96465 1.21808 0.94890 0.94344 1.00335 0.89072 1.23147 0.83546 0.79221 0.83510 1.90523 1.57222 1.56584 1.37835 1.87027 1.50870 1.59026 1.30750 1.20851 0.82664 0.83640 0.99084 0.93011 1.21967 1.13174 1.29295 0.98243 0.92273 1.26112 0.97251 0.91449 1.03033 1.70764 1.41656 1.33965 1.04815 0.83503 0.75917 0.76599 0.74087 1.21141 1.21056 1.20490 1.21848 0.99596 0.98691 0.96080 1.21867 1.00469 0.99169 0.98795 0.93900 0.93170 0.90887 0.92740 0.92987 0.91301 0.89921 0.91749 0.91235 0.91661 0.91574 0.91689 0.89751 0.91122 0.92893 0.91501 0.92561 0.93824 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 37.16 0.37 -2.28 16 2 C -0.11 -1.83 5.79 -26.73 -0.15 -1.98 16 3 C -0.13 -2.42 3.40 -26.73 -0.09 -2.52 16 4 C -0.07 -1.18 2.92 -89.51 -0.26 -1.44 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.12 -1.53 5.56 -25.07 -0.14 -1.67 16 7 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 8 C -0.11 -1.67 6.32 -25.07 -0.16 -1.83 16 9 C -0.09 -1.61 3.40 -90.65 -0.31 -1.92 16 10 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 11 C 0.46 10.04 3.15 36.01 0.11 10.16 16 12 O -0.53 -12.40 12.08 -18.75 -0.23 -12.63 16 13 O -0.36 -8.95 9.47 -39.26 -0.37 -9.32 16 14 C 0.19 4.89 1.97 -27.88 -0.05 4.84 16 15 H 0.05 1.48 5.73 -51.93 -0.30 1.18 16 16 C -0.59 -16.33 8.69 -34.44 -0.30 -16.63 16 17 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 18 C 0.03 0.84 5.45 -17.82 -0.10 0.75 16 19 N -0.88 -25.04 13.62 55.43 0.75 -24.29 16 20 Si 1.07 24.10 29.91 -169.99 -5.08 19.01 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.12 -2.79 5.64 -26.73 -0.15 -2.94 16 25 C -0.15 -2.94 8.55 37.16 0.32 -2.62 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 31 H 0.07 1.43 7.01 -51.93 -0.36 1.07 16 32 H 0.08 1.91 6.71 -51.93 -0.35 1.56 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.39 6.93 -51.93 -0.36 1.03 16 39 H 0.28 8.08 6.46 -40.82 -0.26 7.82 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.06 1.18 7.74 -51.93 -0.40 0.78 16 43 H 0.04 0.89 6.08 -51.93 -0.32 0.57 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -29.12 339.67 -8.74 -37.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.85 Total: 5.96 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.09 Total: -21.71 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.75 Total: -24.29 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.60 Total: -21.95 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.12 -8.74 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.910 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds