Wall clock time and date at job start Mon Mar 30 2020 00:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.05483 * 53.05375 * 4 3 2 6 6 C 1.54269 * 110.03047 * 291.64292 * 4 3 2 7 7 C 1.54895 * 104.19173 * 217.10599 * 6 4 3 8 8 C 1.54885 * 102.75034 * 37.93917 * 7 6 4 9 9 C 1.53867 * 110.03400 * 174.47322 * 4 3 2 10 10 H 1.08998 * 110.07384 * 238.59220 * 9 4 3 11 11 C 1.50706 * 110.03266 * 0.02562 * 9 4 3 12 12 O 1.20825 * 120.00161 * 83.66460 * 11 9 4 13 13 O 1.34231 * 119.99534 * 263.66785 * 11 9 4 14 14 C 1.45205 * 116.99712 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47014 * 329.99247 * 14 13 11 16 16 C 1.50704 * 109.47055 * 209.99740 * 14 13 11 17 17 H 1.08001 * 119.99713 * 270.99862 * 16 14 13 18 18 C 1.37875 * 119.99867 * 90.99318 * 16 14 13 19 19 N 1.31516 * 120.00054 * 352.76087 * 18 16 14 20 20 Si 1.86802 * 119.99790 * 172.75601 * 18 16 14 21 21 H 1.48498 * 109.46905 * 60.00346 * 20 18 16 22 22 H 1.48496 * 109.47193 * 300.00290 * 20 18 16 23 23 H 1.48498 * 109.46916 * 180.02562 * 20 18 16 24 24 C 1.53002 * 109.47329 * 89.99670 * 14 13 11 25 25 C 1.53003 * 109.46754 * 295.98602 * 24 14 13 26 26 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47270 * 300.00586 * 1 2 3 28 28 H 1.09000 * 109.47040 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.47270 * 239.99414 * 2 1 3 30 30 H 1.09000 * 109.47040 * 119.99583 * 2 1 3 31 31 H 1.09000 * 109.47454 * 59.99527 * 3 2 1 32 32 H 1.09000 * 109.46750 * 299.99761 * 3 2 1 33 33 H 1.08996 * 110.48880 * 98.42731 * 6 4 3 34 34 H 1.08998 * 110.48345 * 335.77586 * 6 4 3 35 35 H 1.09000 * 110.75419 * 279.62443 * 7 6 4 36 36 H 1.09000 * 110.91413 * 156.32942 * 7 6 4 37 37 H 1.09003 * 110.48686 * 203.37924 * 8 7 6 38 38 H 1.09004 * 110.48631 * 80.73697 * 8 7 6 39 39 H 0.96997 * 120.00003 * 3.32860 * 19 18 16 40 40 H 1.08997 * 109.47064 * 55.98324 * 24 14 13 41 41 H 1.08999 * 109.46879 * 175.99363 * 24 14 13 42 42 H 1.08992 * 109.47601 * 300.00222 * 25 24 14 43 43 H 1.08999 * 109.46806 * 60.00717 * 25 24 14 44 44 H 1.09003 * 109.46813 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9441 0.8270 -0.8174 6 6 4.0978 0.9082 1.3481 7 6 5.3529 1.7700 1.6330 8 6 4.9270 3.1713 1.1292 9 6 4.0972 2.8813 -0.1386 10 1 4.7269 2.9650 -1.0243 11 6 2.9438 3.8469 -0.2320 12 8 2.4072 4.2462 0.7742 13 8 2.5128 4.2633 -1.4331 14 6 1.3981 5.1937 -1.4472 15 1 0.7629 5.0128 -0.5801 16 6 0.5956 4.9971 -2.7076 17 1 0.8511 5.5465 -3.6016 18 6 -0.4646 4.1157 -2.7193 19 7 -0.6887 3.3428 -1.6791 20 14 -1.5828 4.0196 -4.2126 21 1 -0.7846 3.6364 -5.4047 22 1 -2.2142 5.3435 -4.4442 23 1 -2.6387 3.0027 -3.9756 24 6 1.9299 6.6275 -1.3997 25 6 2.6596 6.8571 -0.0746 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.3691 -0.1439 1.2614 34 1 3.3533 1.0479 2.1319 35 1 6.2105 1.4013 1.0702 36 1 5.5745 1.7940 2.7000 37 1 5.8034 3.7707 0.8827 38 1 4.3163 3.6764 1.8776 39 1 -0.1380 3.4265 -0.8850 40 1 2.6212 6.7863 -2.2274 41 1 1.0976 7.3266 -1.4820 42 1 1.9684 6.6983 0.7531 43 1 3.4918 6.1581 0.0077 44 1 3.0380 7.8788 -0.0405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835339423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:12 Heat of formation + Delta-G solvation = -152.847077 kcal Electronic energy + Delta-G solvation = -22582.233366 eV Core-core repulsion = 19497.016172 eV Total energy + Delta-G solvation = -3085.217194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76998 -39.30330 -37.30887 -35.37569 -35.25580 -33.92181 -30.87319 -30.33676 -28.78115 -26.16299 -25.23300 -23.62537 -22.63542 -21.96491 -21.41267 -20.08740 -19.23878 -18.36665 -17.34370 -16.96803 -16.47974 -15.92112 -15.64676 -15.46701 -15.29119 -14.72872 -14.61915 -14.44134 -13.87923 -13.71798 -13.43569 -13.07538 -12.95713 -12.84590 -12.68465 -12.61060 -12.56155 -12.25927 -11.99741 -11.96510 -11.86922 -11.80011 -11.71228 -11.53654 -11.40172 -11.37181 -11.07829 -11.05103 -10.71968 -10.45797 -8.78901 -6.58376 1.50963 1.52182 1.57195 1.79118 2.19603 2.50252 3.14967 3.49268 3.57843 3.72356 4.04637 4.08936 4.14357 4.16092 4.25260 4.28561 4.42420 4.44902 4.49057 4.54771 4.56960 4.66186 4.68138 4.74914 4.87179 4.91048 4.93399 4.99296 5.02128 5.03907 5.11195 5.19370 5.19930 5.22002 5.29193 5.32745 5.39261 5.48689 5.50155 5.75130 6.00469 6.17260 6.40797 7.19505 7.28468 8.57008 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.008150 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.733359 B = 3434.828879 C = 4765.310969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.120 4.120 4 C -0.073 4.073 5 H 0.096 0.904 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.113 4.113 9 C -0.095 4.095 10 H 0.104 0.896 11 C 0.458 3.542 12 O -0.553 6.553 13 O -0.377 6.377 14 C 0.190 3.810 15 H 0.013 0.987 16 C -0.614 4.614 17 H 0.059 0.941 18 C -0.016 4.016 19 N -0.895 5.895 20 Si 1.120 2.880 21 H -0.269 1.269 22 H -0.265 1.265 23 H -0.281 1.281 24 C -0.121 4.121 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 -5.527 3.860 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.157 4.157 4 C -0.092 4.092 5 H 0.115 0.885 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.115 4.115 10 H 0.122 0.878 11 C 0.304 3.696 12 O -0.445 6.445 13 O -0.294 6.294 14 C 0.139 3.861 15 H 0.031 0.969 16 C -0.651 4.651 17 H 0.077 0.923 18 C -0.220 4.220 19 N -0.530 5.530 20 Si 0.940 3.060 21 H -0.194 1.194 22 H -0.190 1.190 23 H -0.206 1.206 24 C -0.159 4.159 25 C -0.191 4.191 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.233 -6.155 3.519 11.641 hybrid contribution 0.725 1.311 0.714 1.659 sum 9.957 -4.844 4.233 11.854 Atomic orbital electron populations 1.21710 0.96693 1.01433 1.00775 1.21411 0.95229 0.94987 1.02676 1.21812 0.95679 0.98284 0.99950 1.21779 0.94075 0.92603 1.00713 0.88536 1.22445 0.97309 1.00629 0.94503 1.22466 0.97682 0.92456 1.02084 1.22427 0.98555 0.99743 0.94313 1.22051 0.93211 0.93691 1.02512 0.87750 1.24042 0.84273 0.79255 0.82073 1.90506 1.58301 1.57461 1.38246 1.86922 1.50417 1.59378 1.32701 1.20657 0.82911 0.85662 0.96900 0.96914 1.22255 1.14350 1.29756 0.98701 0.92279 1.27601 0.98656 0.90743 1.04972 1.70887 1.41862 1.35229 1.05012 0.82919 0.74368 0.77443 0.71288 1.19434 1.19000 1.20638 1.21796 1.00037 0.96384 0.97692 1.21734 0.99478 1.01174 0.96685 0.90873 0.94487 0.94824 0.91340 0.89904 0.94520 0.94990 0.88679 0.92650 0.89025 0.89770 0.89712 0.92290 0.92984 0.92065 0.91189 0.94285 0.94498 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.91 71.98 0.71 -4.58 16 2 C -0.11 -3.37 5.79 30.59 0.18 -3.19 16 3 C -0.12 -4.65 3.40 30.59 0.10 -4.54 16 4 C -0.07 -2.23 2.92 -10.07 -0.03 -2.25 16 5 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 6 C -0.11 -2.59 5.56 31.67 0.18 -2.41 16 7 C -0.11 -2.19 6.91 31.89 0.22 -1.97 16 8 C -0.11 -3.07 6.32 31.67 0.20 -2.87 16 9 C -0.10 -3.20 3.40 -10.82 -0.04 -3.24 16 10 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 11 C 0.46 20.69 3.15 71.24 0.22 20.91 16 12 O -0.55 -27.37 12.08 21.97 0.27 -27.10 16 13 O -0.38 -19.58 9.47 -51.43 -0.49 -20.07 16 14 C 0.19 10.37 1.97 29.85 0.06 10.43 16 15 H 0.01 0.79 5.73 -2.39 -0.01 0.78 16 16 C -0.61 -35.24 8.69 25.60 0.22 -35.02 16 17 H 0.06 3.30 7.82 -2.91 -0.02 3.28 16 18 C -0.02 -0.94 5.45 84.65 0.46 -0.47 16 19 N -0.90 -54.06 13.62 21.45 0.29 -53.77 16 20 Si 1.12 49.28 29.91 68.60 2.05 51.34 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.12 -5.55 5.64 30.60 0.17 -5.37 16 25 C -0.13 -5.40 8.55 71.98 0.62 -4.79 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.15 7.53 -2.39 -0.02 2.13 16 31 H 0.04 1.62 7.01 -2.39 -0.02 1.60 16 32 H 0.03 1.56 6.71 -2.39 -0.02 1.54 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.45 7.75 -2.39 -0.02 1.44 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.92 6.93 -2.38 -0.02 1.90 16 39 H 0.26 16.39 6.46 -92.71 -0.60 15.80 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.04 1.68 7.74 -2.39 -0.02 1.66 16 43 H 0.04 1.51 6.08 -2.39 -0.01 1.50 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.75 339.67 6.52 -62.23 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 1.11 Total: 26.74 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.28 Total: -39.37 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.29 Total: -53.77 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.22 Total: -47.17 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.34 kcal Total: -68.75 6.52 -62.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.613 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds