Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.53006 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.81564 * 51.66608 * 4 3 2 6 6 C 1.54889 * 110.75416 * 288.33051 * 4 3 2 7 7 C 1.54276 * 104.19158 * 203.73951 * 6 4 3 8 8 C 1.53874 * 106.59754 * 23.61495 * 7 6 4 9 9 C 1.54270 * 106.59835 * 359.97438 * 8 7 6 10 10 H 1.09002 * 110.48176 * 95.20888 * 9 8 7 11 11 C 1.50698 * 110.48461 * 217.71285 * 9 8 7 12 12 O 1.20824 * 119.99653 * 118.54670 * 11 9 8 13 13 O 1.34227 * 120.00334 * 298.54721 * 11 9 8 14 14 C 1.45194 * 117.00195 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.47176 * 30.00404 * 14 13 11 16 16 C 1.50703 * 109.47053 * 150.00347 * 14 13 11 17 17 H 1.08000 * 120.00226 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99741 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00557 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99840 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47040 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47312 * 119.99543 * 20 18 16 23 23 H 1.48499 * 109.47105 * 239.99737 * 20 18 16 24 24 C 1.53000 * 109.47550 * 270.00175 * 14 13 11 25 25 C 1.52997 * 109.47060 * 64.99895 * 24 14 13 26 26 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47173 * 299.99901 * 1 2 3 28 28 H 1.09000 * 109.47224 * 60.00118 * 1 2 3 29 29 H 1.08996 * 109.47663 * 240.00288 * 2 1 3 30 30 H 1.09000 * 109.47224 * 119.99882 * 2 1 3 31 31 H 1.08997 * 109.47125 * 60.00069 * 3 2 1 32 32 H 1.09000 * 109.47083 * 299.99968 * 3 2 1 33 33 H 1.09006 * 110.48744 * 85.06677 * 6 4 3 34 34 H 1.08997 * 110.60335 * 322.47469 * 6 4 3 35 35 H 1.08992 * 110.03128 * 264.32274 * 7 6 4 36 36 H 1.08998 * 110.02744 * 142.89602 * 7 6 4 37 37 H 1.09002 * 110.02441 * 240.71280 * 8 7 6 38 38 H 1.08996 * 110.03472 * 119.28379 * 8 7 6 39 39 H 0.96999 * 120.00539 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47398 * 185.00064 * 24 14 13 41 41 H 1.09001 * 109.47194 * 305.00244 * 24 14 13 42 42 H 1.09002 * 109.47153 * 300.00319 * 25 24 14 43 43 H 1.08998 * 109.47533 * 59.99948 * 25 24 14 44 44 H 1.08996 * 109.47853 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9577 0.8105 -0.7983 6 6 4.1183 0.9873 1.3758 7 6 5.5326 1.6003 1.4409 8 6 5.5328 2.8072 0.4864 9 6 4.1190 2.8851 -0.1259 10 1 3.4977 3.5822 0.4364 11 6 4.1933 3.2966 -1.5738 12 8 3.7833 2.5543 -2.4345 13 8 4.7148 4.4876 -1.9071 14 6 4.7548 4.8174 -3.3206 15 1 3.9236 4.3308 -3.8309 16 6 4.6443 6.3106 -3.4913 17 1 4.5527 6.9480 -2.6243 18 6 4.6591 6.8630 -4.7546 19 7 4.7701 6.0869 -5.8104 20 14 4.5214 8.7138 -4.9663 21 1 4.4073 9.3574 -3.6329 22 1 5.7307 9.2240 -5.6609 23 1 3.3160 9.0314 -5.7734 24 6 6.0760 4.3319 -3.9204 25 6 6.1329 2.8042 -3.8595 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 4.1714 -0.1004 1.4243 34 1 3.4972 1.3744 2.1836 35 1 6.2721 0.8680 1.1173 36 1 5.7509 1.9280 2.4572 37 1 6.2727 2.6605 -0.3006 38 1 5.7515 3.7206 1.0394 39 1 4.7809 6.4755 -6.6991 40 1 6.1449 4.6570 -4.9586 41 1 6.9078 4.7494 -3.3530 42 1 6.0640 2.4792 -2.8213 43 1 5.3011 2.3867 -4.4268 44 1 7.0742 2.4583 -4.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835339425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -134.457398 kcal Electronic energy + Delta-G solvation = -21686.008391 eV Core-core repulsion = 18601.588633 eV Total energy + Delta-G solvation = -3084.419758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02111 -37.99952 -35.54398 -34.47583 -33.43731 -31.35503 -29.72154 -29.33304 -27.14824 -25.19255 -23.33725 -22.05930 -21.41590 -20.14485 -19.79199 -19.05032 -17.05434 -16.51997 -15.80549 -15.39745 -15.02276 -14.75980 -14.62291 -13.88847 -13.70629 -13.00266 -12.85853 -12.83432 -12.55317 -12.43529 -12.16065 -11.55610 -11.42498 -11.35213 -11.24744 -11.13975 -11.09459 -10.94400 -10.82540 -10.64741 -10.51820 -10.46385 -10.31964 -10.28980 -10.21354 -9.75740 -9.42442 -9.27505 -8.75778 -8.43311 -6.16673 -4.23431 3.11641 3.24091 3.31037 3.35925 3.76179 4.34880 4.50584 4.63418 4.86827 5.05245 5.11648 5.15309 5.23512 5.44342 5.50157 5.52956 5.61167 5.63425 5.72293 5.82552 5.88824 5.90791 5.94561 5.99214 6.10935 6.13933 6.20490 6.24650 6.31021 6.34704 6.36409 6.45840 6.51149 6.56364 6.90469 7.00734 7.20170 7.32038 7.64822 7.77390 8.00371 8.19944 8.70572 8.96142 9.42078 10.90132 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.004817 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.721160 B = 5810.842304 C = 6198.173799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.074 4.074 5 H 0.089 0.911 6 C -0.119 4.119 7 C -0.124 4.124 8 C -0.111 4.111 9 C -0.087 4.087 10 H 0.103 0.897 11 C 0.458 3.542 12 O -0.516 6.516 13 O -0.356 6.356 14 C 0.221 3.779 15 H 0.046 0.954 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.135 4.135 25 C -0.142 4.142 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.265 0.735 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -9.820 13.169 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.092 4.092 5 H 0.107 0.893 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.149 4.149 9 C -0.106 4.106 10 H 0.121 0.879 11 C 0.300 3.700 12 O -0.406 6.406 13 O -0.272 6.272 14 C 0.168 3.832 15 H 0.063 0.937 16 C -0.558 4.558 17 H 0.086 0.914 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.173 4.173 25 C -0.199 4.199 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.931 -9.983 12.671 16.247 hybrid contribution -0.034 0.961 -0.408 1.044 sum -1.965 -9.022 12.264 15.351 Atomic orbital electron populations 1.21777 0.96220 1.01193 1.01797 1.21494 0.95500 0.97048 1.01807 1.21605 0.94237 0.96859 1.02200 1.22050 0.95345 0.94149 0.97690 0.89314 1.22442 0.95984 1.00249 0.96940 1.22137 0.97357 0.97277 0.99350 1.22041 0.95178 0.98885 0.98806 1.21924 0.99108 0.98384 0.91223 0.87867 1.23172 0.74567 0.80859 0.91376 1.90586 1.45351 1.53049 1.51575 1.86477 1.72316 1.33942 1.34494 1.20632 0.95170 0.95636 0.71759 0.93661 1.21099 1.51262 0.90320 0.93103 0.91361 1.24881 0.94753 0.99015 0.95300 1.69900 1.49452 1.34965 0.98304 0.86258 0.77767 0.84002 0.78355 1.19495 1.20723 1.20777 1.22005 0.98016 0.92539 1.04744 1.21854 0.99776 0.98505 0.99769 0.93108 0.92991 0.92641 0.91942 0.92291 0.92226 0.91279 0.91550 0.91477 0.91786 0.91707 0.91222 0.90697 0.92494 0.87445 0.94083 0.94905 0.92859 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.32 5.83 -26.73 -0.16 -1.48 16 3 C -0.11 -1.40 4.71 -26.73 -0.13 -1.53 16 4 C -0.07 -0.98 1.88 -88.64 -0.17 -1.15 16 5 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16 6 C -0.12 -1.23 5.69 -25.07 -0.14 -1.37 16 7 C -0.12 -1.30 6.80 -25.61 -0.17 -1.48 16 8 C -0.11 -1.49 6.35 -25.61 -0.16 -1.65 16 9 C -0.09 -1.33 2.81 -90.13 -0.25 -1.59 16 10 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 11 C 0.46 9.47 5.57 36.00 0.20 9.68 16 12 O -0.52 -11.78 12.74 -18.75 -0.24 -12.02 16 13 O -0.36 -8.51 9.78 -39.25 -0.38 -8.89 16 14 C 0.22 5.91 2.25 -27.88 -0.06 5.85 16 15 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 16 C -0.52 -14.68 8.90 -34.44 -0.31 -14.98 16 17 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 18 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 19 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16 20 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 25 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 32 H 0.07 1.05 7.97 -51.93 -0.41 0.63 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 43 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -29.56 344.12 -8.76 -38.32 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.02 Total: 1.49 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.90 Total: -15.58 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.62 Total: -20.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.56 -8.76 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.137 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds