Wall clock time and date at job start Mon Mar 30 2020 00:49:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53004 * 109.46905 * 2 1
4 4 C 1.53006 * 109.47095 * 179.97438 * 3 2 1
5 5 H 1.09006 * 110.81564 * 51.66608 * 4 3 2
6 6 C 1.54889 * 110.75416 * 288.33051 * 4 3 2
7 7 C 1.54276 * 104.19158 * 203.73951 * 6 4 3
8 8 C 1.53874 * 106.59754 * 23.61495 * 7 6 4
9 9 C 1.54270 * 106.59835 * 359.97438 * 8 7 6
10 10 H 1.09002 * 110.48176 * 95.20888 * 9 8 7
11 11 C 1.50698 * 110.48461 * 217.71285 * 9 8 7
12 12 O 1.20824 * 119.99653 * 118.54670 * 11 9 8
13 13 O 1.34227 * 120.00334 * 298.54721 * 11 9 8
14 14 C 1.45194 * 117.00195 * 179.97438 * 13 11 9
15 15 H 1.09002 * 109.47176 * 30.00404 * 14 13 11
16 16 C 1.50703 * 109.47053 * 150.00347 * 14 13 11
17 17 H 1.08000 * 120.00226 * 359.97438 * 16 14 13
18 18 C 1.37876 * 119.99741 * 180.02562 * 16 14 13
19 19 N 1.31511 * 120.00557 * 359.97438 * 18 16 14
20 20 Si 1.86802 * 119.99840 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.47040 * 359.97438 * 20 18 16
22 22 H 1.48500 * 109.47312 * 119.99543 * 20 18 16
23 23 H 1.48499 * 109.47105 * 239.99737 * 20 18 16
24 24 C 1.53000 * 109.47550 * 270.00175 * 14 13 11
25 25 C 1.52997 * 109.47060 * 64.99895 * 24 14 13
26 26 H 1.09004 * 109.46986 * 180.02562 * 1 2 3
27 27 H 1.08997 * 109.47173 * 299.99901 * 1 2 3
28 28 H 1.09000 * 109.47224 * 60.00118 * 1 2 3
29 29 H 1.08996 * 109.47663 * 240.00288 * 2 1 3
30 30 H 1.09000 * 109.47224 * 119.99882 * 2 1 3
31 31 H 1.08997 * 109.47125 * 60.00069 * 3 2 1
32 32 H 1.09000 * 109.47083 * 299.99968 * 3 2 1
33 33 H 1.09006 * 110.48744 * 85.06677 * 6 4 3
34 34 H 1.08997 * 110.60335 * 322.47469 * 6 4 3
35 35 H 1.08992 * 110.03128 * 264.32274 * 7 6 4
36 36 H 1.08998 * 110.02744 * 142.89602 * 7 6 4
37 37 H 1.09002 * 110.02441 * 240.71280 * 8 7 6
38 38 H 1.08996 * 110.03472 * 119.28379 * 8 7 6
39 39 H 0.96999 * 120.00539 * 180.02562 * 19 18 16
40 40 H 1.09002 * 109.47398 * 185.00064 * 24 14 13
41 41 H 1.09001 * 109.47194 * 305.00244 * 24 14 13
42 42 H 1.09002 * 109.47153 * 300.00319 * 25 24 14
43 43 H 1.08998 * 109.47533 * 59.99948 * 25 24 14
44 44 H 1.08996 * 109.47853 * 180.02562 * 25 24 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5700 1.4426 0.0006
5 1 3.9577 0.8105 -0.7983
6 6 4.1183 0.9873 1.3758
7 6 5.5326 1.6003 1.4409
8 6 5.5328 2.8072 0.4864
9 6 4.1190 2.8851 -0.1259
10 1 3.4977 3.5822 0.4364
11 6 4.1933 3.2966 -1.5738
12 8 3.7833 2.5543 -2.4345
13 8 4.7148 4.4876 -1.9071
14 6 4.7548 4.8174 -3.3206
15 1 3.9236 4.3308 -3.8309
16 6 4.6443 6.3106 -3.4913
17 1 4.5527 6.9480 -2.6243
18 6 4.6591 6.8630 -4.7546
19 7 4.7701 6.0869 -5.8104
20 14 4.5214 8.7138 -4.9663
21 1 4.4073 9.3574 -3.6329
22 1 5.7307 9.2240 -5.6609
23 1 3.3160 9.0314 -5.7734
24 6 6.0760 4.3319 -3.9204
25 6 6.1329 2.8042 -3.8595
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.8934 -0.5137 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 1.6766 1.9564 0.8900
32 1 1.6766 1.9564 -0.8900
33 1 4.1714 -0.1004 1.4243
34 1 3.4972 1.3744 2.1836
35 1 6.2721 0.8680 1.1173
36 1 5.7509 1.9280 2.4572
37 1 6.2727 2.6605 -0.3006
38 1 5.7515 3.7206 1.0394
39 1 4.7809 6.4755 -6.6991
40 1 6.1449 4.6570 -4.9586
41 1 6.9078 4.7494 -3.3530
42 1 6.0640 2.4792 -2.8213
43 1 5.3011 2.3867 -4.4268
44 1 7.0742 2.4583 -4.2864
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000835339425.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:19
Heat of formation + Delta-G solvation = -134.457398 kcal
Electronic energy + Delta-G solvation = -21686.008391 eV
Core-core repulsion = 18601.588633 eV
Total energy + Delta-G solvation = -3084.419758 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.02111 -37.99952 -35.54398 -34.47583 -33.43731 -31.35503 -29.72154 -29.33304
-27.14824 -25.19255 -23.33725 -22.05930 -21.41590 -20.14485 -19.79199 -19.05032
-17.05434 -16.51997 -15.80549 -15.39745 -15.02276 -14.75980 -14.62291 -13.88847
-13.70629 -13.00266 -12.85853 -12.83432 -12.55317 -12.43529 -12.16065 -11.55610
-11.42498 -11.35213 -11.24744 -11.13975 -11.09459 -10.94400 -10.82540 -10.64741
-10.51820 -10.46385 -10.31964 -10.28980 -10.21354 -9.75740 -9.42442 -9.27505
-8.75778 -8.43311 -6.16673 -4.23431 3.11641 3.24091 3.31037 3.35925
3.76179 4.34880 4.50584 4.63418 4.86827 5.05245 5.11648 5.15309
5.23512 5.44342 5.50157 5.52956 5.61167 5.63425 5.72293 5.82552
5.88824 5.90791 5.94561 5.99214 6.10935 6.13933 6.20490 6.24650
6.31021 6.34704 6.36409 6.45840 6.51149 6.56364 6.90469 7.00734
7.20170 7.32038 7.64822 7.77390 8.00371 8.19944 8.70572 8.96142
9.42078 10.90132
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.022151 B = 0.004817 C = 0.004516
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1263.721160 B = 5810.842304 C = 6198.173799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.121 4.121
3 C -0.112 4.112
4 C -0.074 4.074
5 H 0.089 0.911
6 C -0.119 4.119
7 C -0.124 4.124
8 C -0.111 4.111
9 C -0.087 4.087
10 H 0.103 0.897
11 C 0.458 3.542
12 O -0.516 6.516
13 O -0.356 6.356
14 C 0.221 3.779
15 H 0.046 0.954
16 C -0.520 4.520
17 H 0.068 0.932
18 C 0.062 3.938
19 N -0.888 5.888
20 Si 0.909 3.091
21 H -0.271 1.271
22 H -0.281 1.281
23 H -0.282 1.282
24 C -0.135 4.135
25 C -0.142 4.142
26 H 0.050 0.950
27 H 0.051 0.949
28 H 0.054 0.946
29 H 0.062 0.938
30 H 0.058 0.942
31 H 0.059 0.941
32 H 0.068 0.932
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.063 0.937
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.074 0.926
39 H 0.265 0.735
40 H 0.108 0.892
41 H 0.040 0.960
42 H 0.032 0.968
43 H 0.052 0.948
44 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.839 -9.820 13.169 16.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.158 4.158
3 C -0.149 4.149
4 C -0.092 4.092
5 H 0.107 0.893
6 C -0.156 4.156
7 C -0.161 4.161
8 C -0.149 4.149
9 C -0.106 4.106
10 H 0.121 0.879
11 C 0.300 3.700
12 O -0.406 6.406
13 O -0.272 6.272
14 C 0.168 3.832
15 H 0.063 0.937
16 C -0.558 4.558
17 H 0.086 0.914
18 C -0.139 4.139
19 N -0.526 5.526
20 Si 0.736 3.264
21 H -0.195 1.195
22 H -0.207 1.207
23 H -0.208 1.208
24 C -0.173 4.173
25 C -0.199 4.199
26 H 0.069 0.931
27 H 0.070 0.930
28 H 0.074 0.926
29 H 0.081 0.919
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.093 0.907
39 H 0.075 0.925
40 H 0.126 0.874
41 H 0.059 0.941
42 H 0.051 0.949
43 H 0.071 0.929
44 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -1.931 -9.983 12.671 16.247
hybrid contribution -0.034 0.961 -0.408 1.044
sum -1.965 -9.022 12.264 15.351
Atomic orbital electron populations
1.21777 0.96220 1.01193 1.01797 1.21494 0.95500 0.97048 1.01807
1.21605 0.94237 0.96859 1.02200 1.22050 0.95345 0.94149 0.97690
0.89314 1.22442 0.95984 1.00249 0.96940 1.22137 0.97357 0.97277
0.99350 1.22041 0.95178 0.98885 0.98806 1.21924 0.99108 0.98384
0.91223 0.87867 1.23172 0.74567 0.80859 0.91376 1.90586 1.45351
1.53049 1.51575 1.86477 1.72316 1.33942 1.34494 1.20632 0.95170
0.95636 0.71759 0.93661 1.21099 1.51262 0.90320 0.93103 0.91361
1.24881 0.94753 0.99015 0.95300 1.69900 1.49452 1.34965 0.98304
0.86258 0.77767 0.84002 0.78355 1.19495 1.20723 1.20777 1.22005
0.98016 0.92539 1.04744 1.21854 0.99776 0.98505 0.99769 0.93108
0.92991 0.92641 0.91942 0.92291 0.92226 0.91279 0.91550 0.91477
0.91786 0.91707 0.91222 0.90697 0.92494 0.87445 0.94083 0.94905
0.92859 0.94940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16
2 C -0.12 -1.32 5.83 -26.73 -0.16 -1.48 16
3 C -0.11 -1.40 4.71 -26.73 -0.13 -1.53 16
4 C -0.07 -0.98 1.88 -88.64 -0.17 -1.15 16
5 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16
6 C -0.12 -1.23 5.69 -25.07 -0.14 -1.37 16
7 C -0.12 -1.30 6.80 -25.61 -0.17 -1.48 16
8 C -0.11 -1.49 6.35 -25.61 -0.16 -1.65 16
9 C -0.09 -1.33 2.81 -90.13 -0.25 -1.59 16
10 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16
11 C 0.46 9.47 5.57 36.00 0.20 9.68 16
12 O -0.52 -11.78 12.74 -18.75 -0.24 -12.02 16
13 O -0.36 -8.51 9.78 -39.25 -0.38 -8.89 16
14 C 0.22 5.91 2.25 -27.88 -0.06 5.85 16
15 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16
16 C -0.52 -14.68 8.90 -34.44 -0.31 -14.98 16
17 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16
18 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16
19 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16
20 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16
21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
24 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16
25 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16
26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16
31 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16
32 H 0.07 1.05 7.97 -51.93 -0.41 0.63 16
33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16
34 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16
35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
37 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16
38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16
40 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16
41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16
43 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16
44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 344.12 15.07 5.19 5.19
Total: -1.00 -29.56 344.12 -8.76 -38.32
By element:
Atomic # 1 Polarization: 9.51 SS G_CDS: -8.02 Total: 1.49 kcal
Atomic # 6 Polarization: -14.68 SS G_CDS: -0.90 Total: -15.58 kcal
Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal
Atomic # 8 Polarization: -20.29 SS G_CDS: -0.62 Total: -20.91 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -29.56 -8.76 -38.32 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000835339425.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.137 kcal
(2) G-P(sol) polarization free energy of solvation -29.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds