Wall clock time and date at job start Mon Mar 30 2020 00:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.53006 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.81564 * 51.66608 * 4 3 2 6 6 C 1.54889 * 110.75416 * 288.33051 * 4 3 2 7 7 C 1.54276 * 104.19158 * 203.73951 * 6 4 3 8 8 C 1.53874 * 106.59754 * 23.61495 * 7 6 4 9 9 C 1.54270 * 106.59835 * 359.97438 * 8 7 6 10 10 H 1.09002 * 110.48176 * 95.20888 * 9 8 7 11 11 C 1.50698 * 110.48461 * 217.71285 * 9 8 7 12 12 O 1.20824 * 119.99653 * 118.54670 * 11 9 8 13 13 O 1.34227 * 120.00334 * 298.54721 * 11 9 8 14 14 C 1.45194 * 117.00195 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.47176 * 30.00404 * 14 13 11 16 16 C 1.50703 * 109.47053 * 150.00347 * 14 13 11 17 17 H 1.08000 * 120.00226 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99741 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00557 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99840 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47040 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47312 * 119.99543 * 20 18 16 23 23 H 1.48499 * 109.47105 * 239.99737 * 20 18 16 24 24 C 1.53000 * 109.47550 * 270.00175 * 14 13 11 25 25 C 1.52997 * 109.47060 * 64.99895 * 24 14 13 26 26 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47173 * 299.99901 * 1 2 3 28 28 H 1.09000 * 109.47224 * 60.00118 * 1 2 3 29 29 H 1.08996 * 109.47663 * 240.00288 * 2 1 3 30 30 H 1.09000 * 109.47224 * 119.99882 * 2 1 3 31 31 H 1.08997 * 109.47125 * 60.00069 * 3 2 1 32 32 H 1.09000 * 109.47083 * 299.99968 * 3 2 1 33 33 H 1.09006 * 110.48744 * 85.06677 * 6 4 3 34 34 H 1.08997 * 110.60335 * 322.47469 * 6 4 3 35 35 H 1.08992 * 110.03128 * 264.32274 * 7 6 4 36 36 H 1.08998 * 110.02744 * 142.89602 * 7 6 4 37 37 H 1.09002 * 110.02441 * 240.71280 * 8 7 6 38 38 H 1.08996 * 110.03472 * 119.28379 * 8 7 6 39 39 H 0.96999 * 120.00539 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47398 * 185.00064 * 24 14 13 41 41 H 1.09001 * 109.47194 * 305.00244 * 24 14 13 42 42 H 1.09002 * 109.47153 * 300.00319 * 25 24 14 43 43 H 1.08998 * 109.47533 * 59.99948 * 25 24 14 44 44 H 1.08996 * 109.47853 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9577 0.8105 -0.7983 6 6 4.1183 0.9873 1.3758 7 6 5.5326 1.6003 1.4409 8 6 5.5328 2.8072 0.4864 9 6 4.1190 2.8851 -0.1259 10 1 3.4977 3.5822 0.4364 11 6 4.1933 3.2966 -1.5738 12 8 3.7833 2.5543 -2.4345 13 8 4.7148 4.4876 -1.9071 14 6 4.7548 4.8174 -3.3206 15 1 3.9236 4.3308 -3.8309 16 6 4.6443 6.3106 -3.4913 17 1 4.5527 6.9480 -2.6243 18 6 4.6591 6.8630 -4.7546 19 7 4.7701 6.0869 -5.8104 20 14 4.5214 8.7138 -4.9663 21 1 4.4073 9.3574 -3.6329 22 1 5.7307 9.2240 -5.6609 23 1 3.3160 9.0314 -5.7734 24 6 6.0760 4.3319 -3.9204 25 6 6.1329 2.8042 -3.8595 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 4.1714 -0.1004 1.4243 34 1 3.4972 1.3744 2.1836 35 1 6.2721 0.8680 1.1173 36 1 5.7509 1.9280 2.4572 37 1 6.2727 2.6605 -0.3006 38 1 5.7515 3.7206 1.0394 39 1 4.7809 6.4755 -6.6991 40 1 6.1449 4.6570 -4.9586 41 1 6.9078 4.7494 -3.3530 42 1 6.0640 2.4792 -2.8213 43 1 5.3011 2.3867 -4.4268 44 1 7.0742 2.4583 -4.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835339425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:18 Heat of formation + Delta-G solvation = -148.467458 kcal Electronic energy + Delta-G solvation = -21686.615913 eV Core-core repulsion = 18601.588633 eV Total energy + Delta-G solvation = -3085.027279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62825 -39.31073 -37.37162 -35.58210 -35.30075 -33.38616 -30.71343 -30.50140 -29.14960 -26.18471 -25.31447 -23.56139 -22.37256 -21.81536 -20.92038 -20.58211 -18.85746 -18.41030 -17.48455 -16.98785 -16.49218 -16.06579 -15.88392 -15.30280 -14.82321 -14.67132 -14.44529 -14.16503 -13.83055 -13.53194 -13.37426 -13.35049 -13.16938 -13.07110 -12.85980 -12.66552 -12.51764 -12.25161 -12.14275 -12.04911 -11.82018 -11.72191 -11.60710 -11.47762 -11.33552 -11.29728 -11.24740 -11.00114 -10.81703 -10.53615 -8.28941 -6.46004 1.39788 1.40474 1.44180 1.54602 2.09430 2.42734 3.00474 3.43449 3.60547 3.80707 4.10971 4.17181 4.23488 4.33889 4.36020 4.39457 4.44711 4.51844 4.55626 4.56917 4.61703 4.76022 4.77479 4.82462 4.95840 4.99181 5.04023 5.07056 5.12305 5.19578 5.22702 5.23137 5.28230 5.35491 5.38449 5.47139 5.49346 5.51718 5.57872 5.65933 5.98367 6.16265 6.60091 7.05450 7.27393 8.78109 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.004817 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.721160 B = 5810.842304 C = 6198.173799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.110 4.110 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.085 4.085 10 H 0.119 0.881 11 C 0.449 3.551 12 O -0.542 6.542 13 O -0.366 6.366 14 C 0.225 3.775 15 H 0.002 0.998 16 C -0.550 4.550 17 H 0.064 0.936 18 C 0.017 3.983 19 N -0.915 5.915 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.276 1.276 24 C -0.128 4.128 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.270 0.730 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -9.964 15.585 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.091 4.091 5 H 0.082 0.918 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.104 4.104 10 H 0.137 0.863 11 C 0.294 3.706 12 O -0.433 6.433 13 O -0.282 6.282 14 C 0.172 3.828 15 H 0.020 0.980 16 C -0.588 4.588 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.201 1.201 24 C -0.166 4.166 25 C -0.185 4.185 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.622 -10.148 15.102 18.267 hybrid contribution -0.166 0.958 -1.185 1.533 sum -1.788 -9.190 13.917 16.773 Atomic orbital electron populations 1.21777 0.95523 1.02040 1.01602 1.21473 0.96120 0.95765 1.02150 1.21592 0.93874 0.97961 1.01295 1.22056 0.95692 0.92213 0.99162 0.91838 1.22427 0.95762 1.01381 0.94955 1.22130 0.97684 0.95865 0.99733 1.22096 0.92899 1.01083 0.98859 1.22173 1.01218 0.99930 0.87082 0.86325 1.24376 0.73130 0.79404 0.93671 1.90570 1.46253 1.53419 1.53092 1.86473 1.73235 1.35930 1.32601 1.20313 0.94324 0.95005 0.73202 0.97987 1.21374 1.52726 0.91058 0.93608 0.91768 1.25808 0.93708 1.04081 0.94631 1.70021 1.49294 1.37146 0.98850 0.85170 0.78163 0.77721 0.78568 1.18795 1.19549 1.20117 1.21845 0.97237 0.94399 1.03152 1.21695 1.00474 0.96348 0.99984 0.91756 0.91784 0.94262 0.93516 0.89955 0.90251 0.94997 0.89833 0.89457 0.91325 0.89184 0.93367 0.89695 0.92043 0.89662 0.93664 0.94440 0.94774 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.12 -2.42 5.83 30.59 0.18 -2.24 16 3 C -0.11 -2.69 4.71 30.60 0.14 -2.54 16 4 C -0.07 -1.86 1.88 -9.51 -0.02 -1.87 16 5 H 0.06 1.95 7.53 -2.38 -0.02 1.93 16 6 C -0.11 -1.85 5.69 31.67 0.18 -1.67 16 7 C -0.12 -2.07 6.80 31.32 0.21 -1.86 16 8 C -0.11 -2.82 6.35 31.32 0.20 -2.62 16 9 C -0.09 -2.56 2.81 -10.47 -0.03 -2.59 16 10 H 0.12 3.22 8.05 -2.39 -0.02 3.20 16 11 C 0.45 19.32 5.57 71.24 0.40 19.71 16 12 O -0.54 -26.20 12.74 21.97 0.28 -25.92 16 13 O -0.37 -18.16 9.78 -51.39 -0.50 -18.66 16 14 C 0.22 12.63 2.25 29.85 0.07 12.70 16 15 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 16 C -0.55 -32.01 8.90 25.60 0.23 -31.79 16 17 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 18 C 0.02 0.97 5.29 84.65 0.45 1.42 16 19 N -0.92 -53.33 11.29 21.45 0.24 -53.09 16 20 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 C -0.13 -6.66 5.49 30.59 0.17 -6.50 16 25 C -0.13 -5.80 8.57 71.98 0.62 -5.19 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.32 7.65 -2.39 -0.02 1.30 16 31 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 32 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 33 H 0.08 1.21 8.09 -2.38 -0.02 1.19 16 34 H 0.09 1.21 7.94 -2.39 -0.02 1.19 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.42 7.83 -2.39 -0.02 1.40 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.27 14.67 8.31 -92.71 -0.77 13.89 16 40 H 0.09 4.82 5.95 -2.39 -0.01 4.81 16 41 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.63 6.06 -2.39 -0.01 1.61 16 43 H 0.03 1.64 7.80 -2.39 -0.02 1.63 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.03 344.12 6.49 -60.54 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.94 Total: 18.72 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.50 Total: -27.17 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.24 Total: -53.09 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.22 Total: -44.58 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.03 6.49 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.922 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds