Wall clock time and date at job start Mon Mar 30 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46847 * 2 1 4 4 C 1.53006 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.01321 * 55.42284 * 4 3 2 6 6 C 1.54267 * 110.03222 * 294.02656 * 4 3 2 7 7 C 1.54884 * 104.19366 * 217.10266 * 6 4 3 8 8 C 1.54890 * 102.75033 * 37.94515 * 7 6 4 9 9 C 1.53872 * 110.03193 * 176.85980 * 4 3 2 10 10 H 1.09004 * 110.03061 * 238.57277 * 9 4 3 11 11 C 1.50695 * 110.03740 * 0.02562 * 9 4 3 12 12 O 1.20826 * 120.00285 * 249.39596 * 11 9 4 13 13 O 1.34229 * 120.00054 * 69.38195 * 11 9 4 14 14 C 1.45200 * 117.00044 * 180.02562 * 13 11 9 15 15 H 1.08996 * 109.47238 * 30.00989 * 14 13 11 16 16 C 1.50704 * 109.46894 * 150.00443 * 14 13 11 17 17 H 1.08001 * 119.99965 * 0.02562 * 16 14 13 18 18 C 1.37878 * 120.00166 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99902 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99993 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47526 * 90.00120 * 20 18 16 22 22 H 1.48504 * 109.46813 * 209.99520 * 20 18 16 23 23 H 1.48496 * 109.47274 * 329.99240 * 20 18 16 24 24 C 1.53001 * 109.47276 * 269.99867 * 14 13 11 25 25 C 1.53002 * 109.46460 * 65.00336 * 24 14 13 26 26 H 1.09005 * 109.46656 * 299.99840 * 1 2 3 27 27 H 1.08999 * 109.47149 * 59.99926 * 1 2 3 28 28 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46367 * 240.00140 * 2 1 3 30 30 H 1.09003 * 109.46905 * 120.00533 * 2 1 3 31 31 H 1.09003 * 109.47803 * 299.99983 * 3 2 1 32 32 H 1.09005 * 109.47362 * 60.00593 * 3 2 1 33 33 H 1.08993 * 110.48624 * 335.78079 * 6 4 3 34 34 H 1.08996 * 110.48395 * 98.42820 * 6 4 3 35 35 H 1.09002 * 110.75741 * 156.25602 * 7 6 4 36 36 H 1.08999 * 110.75974 * 279.62962 * 7 6 4 37 37 H 1.08993 * 110.48585 * 80.73555 * 8 7 6 38 38 H 1.09004 * 110.48979 * 203.24552 * 8 7 6 39 39 H 0.96994 * 119.99804 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.47226 * 184.99752 * 24 14 13 41 41 H 1.08994 * 109.47540 * 305.00546 * 24 14 13 42 42 H 1.08995 * 109.47157 * 300.00009 * 25 24 14 43 43 H 1.09004 * 109.47028 * 60.00025 * 25 24 14 44 44 H 1.09005 * 109.47160 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9427 0.8613 -0.8441 6 6 4.0990 0.8521 1.3228 7 6 5.3544 1.7012 1.6424 8 6 4.9280 3.1224 1.1982 9 6 4.0971 2.8859 -0.0798 10 1 4.7263 3.0058 -0.9618 11 6 2.9438 3.8545 -0.1317 12 8 2.7176 4.4709 -1.1460 13 8 2.1676 4.0324 0.9488 14 6 1.0748 4.9806 0.8266 15 1 0.7279 5.0040 -0.2064 16 6 -0.0580 4.5603 1.7274 17 1 0.0344 3.6699 2.3316 18 6 -1.2123 5.3125 1.7801 19 7 -1.3247 6.3970 1.0447 20 14 -2.6160 4.7919 2.8972 21 1 -2.4435 5.4169 4.2332 22 1 -3.9064 5.2316 2.3082 23 1 -2.6144 3.3137 3.0382 24 6 1.5600 6.3734 1.2335 25 6 2.6239 6.8521 0.2436 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.3552 0.9588 2.1123 34 1 4.3702 -0.1954 1.1918 35 1 5.5737 1.6797 2.7099 36 1 6.2114 1.3565 1.0639 37 1 4.3181 3.5956 1.9676 38 1 5.8042 3.7324 0.9785 39 1 -2.1369 6.9260 1.0816 40 1 0.7194 7.0673 1.2272 41 1 1.9885 6.3308 2.2348 42 1 3.4644 6.1583 0.2498 43 1 2.1953 6.8948 -0.7578 44 1 2.9693 7.8446 0.5331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835339426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:21 Heat of formation + Delta-G solvation = -131.247861 kcal Electronic energy + Delta-G solvation = -22436.069628 eV Core-core repulsion = 19351.789046 eV Total energy + Delta-G solvation = -3084.280582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18254 -37.83458 -35.65542 -34.18955 -33.41979 -31.35032 -29.67243 -29.16189 -27.14645 -24.88691 -23.33033 -21.87570 -21.48320 -20.48155 -19.80148 -18.70803 -16.71272 -16.52419 -15.69690 -15.36199 -15.07945 -14.77148 -14.48847 -13.91131 -13.45572 -13.15200 -12.78845 -12.70443 -12.48632 -12.02352 -11.80015 -11.73213 -11.37946 -11.17300 -11.15756 -11.07902 -10.96310 -10.91986 -10.67813 -10.62404 -10.56849 -10.41673 -10.25968 -10.16459 -10.05593 -9.75863 -9.37617 -9.25576 -8.74211 -8.42435 -6.16449 -4.23003 3.09835 3.24426 3.30445 3.33570 3.78748 4.34658 4.66619 4.72873 4.89431 5.15663 5.23780 5.30947 5.42942 5.46329 5.60417 5.65405 5.70163 5.74989 5.86883 5.97379 6.03347 6.09330 6.13661 6.14772 6.25678 6.25728 6.32015 6.32145 6.38520 6.48650 6.50834 6.55730 6.62834 6.86398 6.90618 7.01500 7.20643 7.32251 7.64660 7.77541 8.00311 8.19967 8.70499 8.96110 9.42269 10.90376 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.007560 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.713821 B = 3702.763278 C = 4713.225434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.134 4.134 4 C -0.076 4.076 5 H 0.074 0.926 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.088 4.088 10 H 0.100 0.900 11 C 0.466 3.534 12 O -0.526 6.526 13 O -0.350 6.350 14 C 0.221 3.779 15 H 0.044 0.956 16 C -0.516 4.516 17 H 0.068 0.932 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.907 3.093 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.136 4.136 25 C -0.142 4.142 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.265 0.735 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 -9.836 0.381 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.171 4.171 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.107 4.107 10 H 0.118 0.882 11 C 0.309 3.691 12 O -0.416 6.416 13 O -0.266 6.266 14 C 0.169 3.831 15 H 0.062 0.938 16 C -0.554 4.554 17 H 0.086 0.914 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.734 3.266 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.174 4.174 25 C -0.200 4.200 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.556 -9.475 0.062 13.457 hybrid contribution -0.795 0.038 0.298 0.850 sum 8.761 -9.437 0.360 12.882 Atomic orbital electron populations 1.21771 0.95861 1.00737 1.02728 1.21463 0.95990 0.96791 1.01072 1.22093 0.93448 0.97121 1.04412 1.21727 0.96407 0.92968 0.98407 0.90739 1.22465 0.97327 0.98486 0.97160 1.22476 0.97606 0.94941 1.00922 1.22441 0.99112 0.97616 0.96508 1.21944 0.93821 0.94069 1.00888 0.88205 1.23054 0.83204 0.80573 0.82253 1.90608 1.70832 1.47128 1.33061 1.86481 1.41686 1.60146 1.38276 1.20602 0.80619 0.83208 0.98695 0.93787 1.21016 0.98095 1.11020 1.25270 0.91417 1.24868 0.98342 0.94800 0.95911 1.69892 1.27830 1.15400 1.39488 0.86349 0.80878 0.79041 0.80336 1.20433 1.21042 1.19621 1.22017 0.98918 0.99992 0.96465 1.21860 0.99005 0.98476 1.00638 0.92062 0.92782 0.93456 0.92917 0.92205 0.92177 0.88589 0.90670 0.91809 0.91361 0.91750 0.89571 0.91504 0.92473 0.87474 0.94077 0.94927 0.92913 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.12 -1.56 5.77 -26.73 -0.15 -1.72 16 3 C -0.13 -2.16 3.35 -26.73 -0.09 -2.25 16 4 C -0.08 -1.05 2.95 -89.50 -0.26 -1.31 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.12 -1.37 5.44 -25.07 -0.14 -1.51 16 7 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 8 C -0.12 -1.61 6.32 -25.07 -0.16 -1.76 16 9 C -0.09 -1.36 3.36 -90.66 -0.30 -1.66 16 10 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.47 9.58 3.29 36.00 0.12 9.70 16 12 O -0.53 -12.43 14.24 -18.75 -0.27 -12.70 16 13 O -0.35 -7.94 7.01 -39.26 -0.28 -8.22 16 14 C 0.22 5.77 2.25 -27.88 -0.06 5.71 16 15 H 0.04 1.30 7.16 -51.93 -0.37 0.92 16 16 C -0.52 -14.08 8.90 -34.44 -0.31 -14.38 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 19 N -0.89 -25.00 11.29 55.43 0.63 -24.37 16 20 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.14 -3.38 5.49 -26.73 -0.15 -3.52 16 25 C -0.14 -3.17 8.57 37.16 0.32 -2.85 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.73 7.44 -51.93 -0.39 0.35 16 31 H 0.06 1.12 7.34 -51.93 -0.38 0.74 16 32 H 0.10 1.82 6.18 -51.93 -0.32 1.50 16 33 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.33 7.22 -51.93 -0.38 0.96 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 43 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -29.01 337.94 -8.81 -37.83 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.89 Total: 3.77 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.08 Total: -17.29 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.54 Total: -20.91 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.01 -8.81 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.421 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds