Wall clock time and date at job start Mon Mar 30 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46847 * 2 1 4 4 C 1.53006 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.01321 * 55.42284 * 4 3 2 6 6 C 1.54267 * 110.03222 * 294.02656 * 4 3 2 7 7 C 1.54884 * 104.19366 * 217.10266 * 6 4 3 8 8 C 1.54890 * 102.75033 * 37.94515 * 7 6 4 9 9 C 1.53872 * 110.03193 * 176.85980 * 4 3 2 10 10 H 1.09004 * 110.03061 * 238.57277 * 9 4 3 11 11 C 1.50695 * 110.03740 * 0.02562 * 9 4 3 12 12 O 1.20826 * 120.00285 * 249.39596 * 11 9 4 13 13 O 1.34229 * 120.00054 * 69.38195 * 11 9 4 14 14 C 1.45200 * 117.00044 * 180.02562 * 13 11 9 15 15 H 1.08996 * 109.47238 * 30.00989 * 14 13 11 16 16 C 1.50704 * 109.46894 * 150.00443 * 14 13 11 17 17 H 1.08001 * 119.99965 * 0.02562 * 16 14 13 18 18 C 1.37878 * 120.00166 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99902 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99993 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47526 * 90.00120 * 20 18 16 22 22 H 1.48504 * 109.46813 * 209.99520 * 20 18 16 23 23 H 1.48496 * 109.47274 * 329.99240 * 20 18 16 24 24 C 1.53001 * 109.47276 * 269.99867 * 14 13 11 25 25 C 1.53002 * 109.46460 * 65.00336 * 24 14 13 26 26 H 1.09005 * 109.46656 * 299.99840 * 1 2 3 27 27 H 1.08999 * 109.47149 * 59.99926 * 1 2 3 28 28 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46367 * 240.00140 * 2 1 3 30 30 H 1.09003 * 109.46905 * 120.00533 * 2 1 3 31 31 H 1.09003 * 109.47803 * 299.99983 * 3 2 1 32 32 H 1.09005 * 109.47362 * 60.00593 * 3 2 1 33 33 H 1.08993 * 110.48624 * 335.78079 * 6 4 3 34 34 H 1.08996 * 110.48395 * 98.42820 * 6 4 3 35 35 H 1.09002 * 110.75741 * 156.25602 * 7 6 4 36 36 H 1.08999 * 110.75974 * 279.62962 * 7 6 4 37 37 H 1.08993 * 110.48585 * 80.73555 * 8 7 6 38 38 H 1.09004 * 110.48979 * 203.24552 * 8 7 6 39 39 H 0.96994 * 119.99804 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.47226 * 184.99752 * 24 14 13 41 41 H 1.08994 * 109.47540 * 305.00546 * 24 14 13 42 42 H 1.08995 * 109.47157 * 300.00009 * 25 24 14 43 43 H 1.09004 * 109.47028 * 60.00025 * 25 24 14 44 44 H 1.09005 * 109.47160 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9427 0.8613 -0.8441 6 6 4.0990 0.8521 1.3228 7 6 5.3544 1.7012 1.6424 8 6 4.9280 3.1224 1.1982 9 6 4.0971 2.8859 -0.0798 10 1 4.7263 3.0058 -0.9618 11 6 2.9438 3.8545 -0.1317 12 8 2.7176 4.4709 -1.1460 13 8 2.1676 4.0324 0.9488 14 6 1.0748 4.9806 0.8266 15 1 0.7279 5.0040 -0.2064 16 6 -0.0580 4.5603 1.7274 17 1 0.0344 3.6699 2.3316 18 6 -1.2123 5.3125 1.7801 19 7 -1.3247 6.3970 1.0447 20 14 -2.6160 4.7919 2.8972 21 1 -2.4435 5.4169 4.2332 22 1 -3.9064 5.2316 2.3082 23 1 -2.6144 3.3137 3.0382 24 6 1.5600 6.3734 1.2335 25 6 2.6239 6.8521 0.2436 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.3552 0.9588 2.1123 34 1 4.3702 -0.1954 1.1918 35 1 5.5737 1.6797 2.7099 36 1 6.2114 1.3565 1.0639 37 1 4.3181 3.5956 1.9676 38 1 5.8042 3.7324 0.9785 39 1 -2.1369 6.9260 1.0816 40 1 0.7194 7.0673 1.2272 41 1 1.9885 6.3308 2.2348 42 1 3.4644 6.1583 0.2498 43 1 2.1953 6.8948 -0.7578 44 1 2.9693 7.8446 0.5331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835339426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:21 Heat of formation + Delta-G solvation = -144.968798 kcal Electronic energy + Delta-G solvation = -22436.664612 eV Core-core repulsion = 19351.789046 eV Total energy + Delta-G solvation = -3084.875566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78041 -39.17514 -37.53026 -35.44670 -35.32196 -33.36167 -30.81757 -30.36286 -29.14559 -26.05720 -25.32790 -23.47889 -22.59974 -21.91093 -21.30572 -20.27117 -18.68030 -18.21885 -17.09082 -17.02030 -16.73310 -16.26970 -15.89285 -15.21435 -14.89377 -14.62366 -14.49316 -14.19513 -13.88894 -13.48864 -13.36159 -13.31387 -13.15723 -12.95169 -12.83399 -12.65753 -12.52238 -12.26380 -12.16300 -11.92985 -11.77861 -11.72164 -11.70930 -11.43306 -11.38023 -11.30914 -11.22525 -10.98409 -10.75902 -10.50117 -8.27014 -6.42666 1.38889 1.40560 1.44461 1.51784 2.11516 2.43657 3.02691 3.57683 3.64096 3.66753 4.01324 4.15960 4.32572 4.33587 4.35949 4.37972 4.47815 4.48922 4.57503 4.61952 4.66885 4.74821 4.81117 4.85816 4.93222 5.00887 5.06375 5.07593 5.10958 5.21105 5.23267 5.27011 5.29237 5.33537 5.40218 5.45243 5.50303 5.54277 5.62933 5.68158 6.00320 6.18425 6.62904 7.07348 7.29874 8.79968 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.007560 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.713821 B = 3702.763278 C = 4713.225434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.130 4.130 4 C -0.073 4.073 5 H 0.101 0.899 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.086 4.086 10 H 0.117 0.883 11 C 0.461 3.539 12 O -0.563 6.563 13 O -0.350 6.350 14 C 0.228 3.772 15 H -0.002 1.002 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.017 3.983 19 N -0.916 5.916 20 Si 0.974 3.026 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.130 4.130 25 C -0.129 4.129 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.546 -11.988 1.407 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C -0.168 4.168 4 C -0.092 4.092 5 H 0.120 0.880 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.105 4.105 10 H 0.135 0.865 11 C 0.307 3.693 12 O -0.455 6.455 13 O -0.266 6.266 14 C 0.175 3.825 15 H 0.015 0.985 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.798 3.202 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.169 4.169 25 C -0.186 4.186 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.309 -11.637 1.094 16.264 hybrid contribution -1.334 0.720 -0.091 1.519 sum 9.975 -10.917 1.003 14.822 Atomic orbital electron populations 1.21794 0.96895 1.01855 1.00766 1.21444 0.95081 0.94992 1.03066 1.21989 0.95711 0.98353 1.00728 1.21821 0.94219 0.92129 1.01006 0.88039 1.22462 0.97253 1.00285 0.95047 1.22474 0.97841 0.92315 1.02163 1.22477 0.98854 0.99933 0.94504 1.22178 0.91868 0.93560 1.02935 0.86536 1.24221 0.83544 0.80607 0.80937 1.90587 1.71935 1.48903 1.34104 1.86495 1.41186 1.59444 1.39464 1.20232 0.81789 0.84747 0.95753 0.98461 1.21264 0.99281 1.11296 1.25754 0.91726 1.25761 1.00730 0.94591 0.97173 1.70021 1.28610 1.16261 1.40581 0.85307 0.77406 0.78950 0.78566 1.19223 1.20468 1.18946 1.21871 0.98830 0.98788 0.97363 1.21707 0.98095 1.00143 0.98692 0.94341 0.94479 0.90722 0.90710 0.90120 0.95968 0.92187 0.92348 0.88742 0.90094 0.89087 0.92213 0.89758 0.92194 0.89746 0.93552 0.94424 0.94957 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.11 -2.78 5.77 30.59 0.18 -2.60 16 3 C -0.13 -4.29 3.35 30.59 0.10 -4.18 16 4 C -0.07 -1.87 2.95 -10.07 -0.03 -1.90 16 5 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 6 C -0.11 -2.28 5.44 31.67 0.17 -2.11 16 7 C -0.11 -1.98 6.91 31.88 0.22 -1.76 16 8 C -0.12 -3.00 6.32 31.67 0.20 -2.80 16 9 C -0.09 -2.58 3.36 -10.82 -0.04 -2.62 16 10 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 11 C 0.46 19.67 3.29 71.23 0.23 19.91 16 12 O -0.56 -27.98 14.24 21.96 0.31 -27.67 16 13 O -0.35 -16.72 7.01 -51.41 -0.36 -17.08 16 14 C 0.23 12.61 2.25 29.85 0.07 12.67 16 15 H 0.00 -0.15 7.16 -2.39 -0.02 -0.17 16 16 C -0.54 -30.70 8.90 25.60 0.23 -30.47 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.02 0.94 5.29 84.65 0.45 1.39 16 19 N -0.92 -53.40 11.29 21.45 0.24 -53.16 16 20 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C -0.13 -6.74 5.49 30.60 0.17 -6.57 16 25 C -0.13 -5.88 8.57 71.98 0.62 -5.26 16 26 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 31 H 0.02 0.86 7.34 -2.39 -0.02 0.85 16 32 H 0.06 2.40 6.18 -2.38 -0.01 2.38 16 33 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.82 7.22 -2.39 -0.02 1.80 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.08 4.76 5.95 -2.39 -0.01 4.75 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.64 6.06 -2.39 -0.01 1.62 16 43 H 0.03 1.57 7.80 -2.38 -0.02 1.55 16 44 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -67.31 337.94 6.45 -60.86 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.94 Total: 21.58 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 3.28 Total: -30.03 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.24 Total: -53.16 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.05 Total: -44.75 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.31 6.45 -60.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835339426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.106 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds