Wall clock time and date at job start Mon Mar 30 2020 01:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 H 1.08999 * 109.47381 * 304.99646 * 3 2 1 5 5 C 1.50699 * 109.47061 * 185.00033 * 3 2 1 6 6 H 1.07996 * 120.00244 * 239.99811 * 5 3 2 7 7 C 1.37880 * 120.00088 * 59.99942 * 5 3 2 8 8 N 1.31519 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46888 * 90.00445 * 9 7 5 11 11 H 1.48504 * 109.47128 * 209.99733 * 9 7 5 12 12 H 1.48496 * 109.47449 * 330.00292 * 9 7 5 13 13 O 1.45199 * 109.47148 * 64.99812 * 3 2 1 14 14 C 1.34230 * 117.00265 * 269.99789 * 13 3 2 15 15 O 1.20825 * 119.99544 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00046 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 60.00234 * 16 14 13 18 18 C 1.53002 * 109.47097 * 300.00355 * 16 14 13 19 19 C 1.53000 * 109.46911 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46806 * 59.99917 * 19 18 16 21 21 H 1.09001 * 109.47248 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46886 * 60.00087 * 20 19 18 23 23 C 1.52999 * 109.47628 * 300.00074 * 20 19 18 24 24 H 1.09002 * 109.46716 * 300.00030 * 23 20 19 25 25 C 1.52997 * 109.47317 * 180.02562 * 23 20 19 26 26 C 1.52992 * 109.46961 * 59.99659 * 23 20 19 27 27 H 1.09003 * 109.47318 * 299.99756 * 1 2 3 28 28 H 1.09000 * 109.46961 * 60.00150 * 1 2 3 29 29 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47058 * 240.00393 * 2 1 3 31 31 H 1.09000 * 109.47310 * 119.99435 * 2 1 3 32 32 H 0.96989 * 119.99959 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.47060 * 299.99872 * 18 16 14 34 34 H 1.09004 * 109.47059 * 60.00356 * 18 16 14 35 35 H 1.09001 * 109.47194 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47131 * 300.00452 * 19 18 16 37 37 H 1.08996 * 109.47261 * 299.99422 * 22 20 19 38 38 H 1.09001 * 109.47377 * 59.99963 * 22 20 19 39 39 H 1.09000 * 109.46866 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.47153 * 299.99641 * 25 23 20 41 41 H 1.09001 * 109.46832 * 179.97438 * 25 23 20 42 42 H 1.09004 * 109.47261 * 59.99813 * 25 23 20 43 43 H 1.09002 * 109.47103 * 60.00608 * 26 23 20 44 44 H 1.09001 * 109.47066 * 180.02562 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8815 -1.3818 10 1 6.5549 -0.3500 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5569 2.0740 -0.6902 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2193 2.7370 0.2655 16 6 0.0068 3.4216 2.5087 17 1 0.7238 4.1958 2.7821 18 6 -0.1040 2.4045 3.6463 19 6 -0.5763 3.1114 4.9183 20 6 -1.9446 3.7491 4.6692 21 1 -2.2813 4.2524 5.5755 22 6 -2.9513 2.6626 4.2857 23 6 -1.8339 4.7662 3.5316 24 1 -1.1166 5.5402 3.8049 25 6 -3.2020 5.4043 3.2830 26 6 -1.3615 4.0593 2.2597 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8292 -0.0609 -2.9499 33 1 -0.8208 1.6303 3.3729 34 1 0.8710 1.9505 3.8240 35 1 -0.6556 2.3867 5.7286 36 1 0.1410 3.8854 5.1915 37 1 -2.6149 2.1590 3.3795 38 1 -3.0303 1.9380 5.0961 39 1 -3.9262 3.1169 4.1087 40 1 -3.9196 4.6306 3.0099 41 1 -3.1229 6.1292 2.4729 42 1 -3.5381 5.9080 4.1894 43 1 -2.0787 3.2853 1.9865 44 1 -1.2822 4.7840 1.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:03 Heat of formation + Delta-G solvation = -131.005872 kcal Electronic energy + Delta-G solvation = -21949.249355 eV Core-core repulsion = 18864.979267 eV Total energy + Delta-G solvation = -3084.270088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23008 -38.69235 -35.71397 -33.53897 -32.82377 -31.79828 -31.25720 -27.69014 -27.29270 -25.88170 -23.80110 -22.83052 -21.66987 -20.39051 -19.22366 -18.47119 -16.86664 -16.51197 -15.76073 -15.33175 -15.13381 -15.02136 -14.45167 -14.03661 -13.37154 -13.08668 -13.01081 -12.80287 -12.62142 -12.20916 -12.04188 -11.89868 -11.81694 -11.41855 -11.31735 -11.22357 -11.10466 -11.04743 -10.94530 -10.67304 -10.62003 -10.31835 -10.25682 -10.16329 -9.97145 -9.75897 -9.39961 -9.25971 -8.76905 -8.42761 -6.16456 -4.23324 3.10619 3.25343 3.30889 3.34675 3.73955 4.34546 4.64894 4.65864 4.77793 5.09800 5.10741 5.15366 5.25044 5.34693 5.43980 5.49317 5.57159 5.61374 5.69344 5.80667 5.87376 5.90578 5.97410 6.00377 6.06470 6.13878 6.23266 6.26025 6.30372 6.31940 6.36450 6.44669 6.50166 6.58740 6.90559 7.00636 7.20223 7.31877 7.64701 7.77401 8.00275 8.19887 8.70038 8.95438 9.42043 10.90325 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.004531 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.782528 B = 6178.406231 C = 6326.765467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.519 6.519 16 C -0.081 4.081 17 H 0.099 0.901 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.087 4.087 21 H 0.067 0.933 22 C -0.155 4.155 23 C -0.087 4.087 24 H 0.070 0.930 25 C -0.148 4.148 26 C -0.098 4.098 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 5.909 12.816 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.100 4.100 17 H 0.117 0.883 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.106 4.106 21 H 0.086 0.914 22 C -0.212 4.212 23 C -0.105 4.105 24 H 0.088 0.912 25 C -0.205 4.205 26 C -0.136 4.136 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.413 5.784 12.306 17.127 hybrid contribution 0.946 -0.113 -0.337 1.010 sum -9.467 5.672 11.969 16.281 Atomic orbital electron populations 1.21854 0.98418 0.98869 1.00761 1.22004 0.92600 0.99440 1.03241 1.20632 0.94903 0.88751 0.78902 0.93673 1.21055 0.89803 1.38831 1.06164 0.91409 1.24884 0.99161 0.94824 0.95073 1.69892 1.35327 1.37909 1.09488 0.86303 0.84027 0.78658 0.77320 1.20371 1.20991 1.19653 1.86468 1.34431 1.62426 1.43845 1.23315 0.80672 0.76876 0.89427 1.90589 1.55621 1.58571 1.36090 1.21010 0.98499 0.98369 0.92161 0.88319 1.21527 1.02701 0.97312 0.93373 1.21571 0.96357 0.99768 0.97251 1.21146 0.95558 0.96077 0.97798 0.91450 1.22015 0.98769 0.98505 1.01911 1.21145 0.97295 0.97064 0.94992 0.91192 1.21866 0.96851 1.00537 1.01236 1.21492 0.94868 1.00184 0.97043 0.94897 0.92884 0.94937 0.87449 0.94069 0.92438 0.91314 0.90418 0.91693 0.91752 0.91765 0.93029 0.92621 0.92299 0.92725 0.92912 0.90788 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.83 16 2 C -0.13 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.26 11.30 55.43 0.63 -24.64 16 9 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 O -0.36 -8.47 9.71 -39.26 -0.38 -8.85 16 14 C 0.45 9.44 5.71 36.01 0.21 9.65 16 15 O -0.52 -12.01 13.13 -18.75 -0.25 -12.26 16 16 C -0.08 -1.23 2.63 -91.77 -0.24 -1.47 16 17 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.11 -1.49 4.86 -26.73 -0.13 -1.62 16 19 C -0.11 -1.15 5.45 -26.73 -0.15 -1.30 16 20 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 C -0.16 -1.52 8.15 37.16 0.30 -1.22 16 23 C -0.09 -0.90 2.49 -90.63 -0.23 -1.12 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 26 C -0.10 -1.32 3.50 -26.74 -0.09 -1.42 16 27 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 28 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 34 H 0.08 1.11 8.11 -51.93 -0.42 0.68 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 40 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 1.06 6.39 -51.93 -0.33 0.73 16 44 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -29.62 331.04 -8.17 -37.78 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.60 Total: 1.33 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.54 Total: -14.48 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.64 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.63 Total: -21.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.62 -8.17 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.222 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds