Wall clock time and date at job start Mon Mar 30 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 H 1.08999 * 109.47381 * 304.99646 * 3 2 1 5 5 C 1.50699 * 109.47061 * 185.00033 * 3 2 1 6 6 H 1.07996 * 120.00244 * 239.99811 * 5 3 2 7 7 C 1.37880 * 120.00088 * 59.99942 * 5 3 2 8 8 N 1.31519 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46888 * 90.00445 * 9 7 5 11 11 H 1.48504 * 109.47128 * 209.99733 * 9 7 5 12 12 H 1.48496 * 109.47449 * 330.00292 * 9 7 5 13 13 O 1.45199 * 109.47148 * 64.99812 * 3 2 1 14 14 C 1.34230 * 117.00265 * 269.99789 * 13 3 2 15 15 O 1.20825 * 119.99544 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00046 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 60.00234 * 16 14 13 18 18 C 1.53002 * 109.47097 * 300.00355 * 16 14 13 19 19 C 1.53000 * 109.46911 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46806 * 59.99917 * 19 18 16 21 21 H 1.09001 * 109.47248 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46886 * 60.00087 * 20 19 18 23 23 C 1.52999 * 109.47628 * 300.00074 * 20 19 18 24 24 H 1.09002 * 109.46716 * 300.00030 * 23 20 19 25 25 C 1.52997 * 109.47317 * 180.02562 * 23 20 19 26 26 C 1.52992 * 109.46961 * 59.99659 * 23 20 19 27 27 H 1.09003 * 109.47318 * 299.99756 * 1 2 3 28 28 H 1.09000 * 109.46961 * 60.00150 * 1 2 3 29 29 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47058 * 240.00393 * 2 1 3 31 31 H 1.09000 * 109.47310 * 119.99435 * 2 1 3 32 32 H 0.96989 * 119.99959 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.47060 * 299.99872 * 18 16 14 34 34 H 1.09004 * 109.47059 * 60.00356 * 18 16 14 35 35 H 1.09001 * 109.47194 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47131 * 300.00452 * 19 18 16 37 37 H 1.08996 * 109.47261 * 299.99422 * 22 20 19 38 38 H 1.09001 * 109.47377 * 59.99963 * 22 20 19 39 39 H 1.09000 * 109.46866 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.47153 * 299.99641 * 25 23 20 41 41 H 1.09001 * 109.46832 * 179.97438 * 25 23 20 42 42 H 1.09004 * 109.47261 * 59.99813 * 25 23 20 43 43 H 1.09002 * 109.47103 * 60.00608 * 26 23 20 44 44 H 1.09001 * 109.47066 * 180.02562 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8815 -1.3818 10 1 6.5549 -0.3500 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5569 2.0740 -0.6902 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2193 2.7370 0.2655 16 6 0.0068 3.4216 2.5087 17 1 0.7238 4.1958 2.7821 18 6 -0.1040 2.4045 3.6463 19 6 -0.5763 3.1114 4.9183 20 6 -1.9446 3.7491 4.6692 21 1 -2.2813 4.2524 5.5755 22 6 -2.9513 2.6626 4.2857 23 6 -1.8339 4.7662 3.5316 24 1 -1.1166 5.5402 3.8049 25 6 -3.2020 5.4043 3.2830 26 6 -1.3615 4.0593 2.2597 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8292 -0.0609 -2.9499 33 1 -0.8208 1.6303 3.3729 34 1 0.8710 1.9505 3.8240 35 1 -0.6556 2.3867 5.7286 36 1 0.1410 3.8854 5.1915 37 1 -2.6149 2.1590 3.3795 38 1 -3.0303 1.9380 5.0961 39 1 -3.9262 3.1169 4.1087 40 1 -3.9196 4.6306 3.0099 41 1 -3.1229 6.1292 2.4729 42 1 -3.5381 5.9080 4.1894 43 1 -2.0787 3.2853 1.9865 44 1 -1.2822 4.7840 1.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:02 Heat of formation + Delta-G solvation = -145.451378 kcal Electronic energy + Delta-G solvation = -21949.875759 eV Core-core repulsion = 18864.979267 eV Total energy + Delta-G solvation = -3084.896492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72147 -39.97381 -37.57647 -35.52039 -33.97720 -33.30078 -32.69686 -29.37984 -28.50370 -26.87794 -25.45675 -24.46965 -22.60870 -22.16559 -20.98602 -19.43184 -18.80713 -18.32160 -17.21106 -17.00539 -16.59230 -16.18231 -15.94157 -15.11792 -14.81619 -14.76304 -14.39021 -14.08569 -13.58820 -13.55781 -13.39483 -13.33816 -13.12849 -13.08747 -12.83217 -12.75042 -12.73269 -12.52273 -12.18508 -12.12810 -11.98113 -11.78384 -11.60032 -11.48708 -11.32459 -11.09475 -10.91757 -10.82543 -10.80367 -10.52388 -8.28253 -6.45375 1.39905 1.41638 1.43001 1.53791 2.07774 2.42631 3.01107 3.64359 3.72982 3.75547 4.09473 4.14566 4.26279 4.30408 4.34920 4.37242 4.38520 4.54611 4.55905 4.64408 4.73100 4.78051 4.82460 4.85799 4.97161 5.04753 5.06370 5.12967 5.16645 5.19846 5.20638 5.21624 5.34631 5.38104 5.42188 5.48384 5.50961 5.53430 5.66234 5.70099 5.98533 6.15756 6.60263 7.03998 7.27460 8.78569 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.004531 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.782528 B = 6178.406231 C = 6326.765467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.363 6.363 14 C 0.446 3.554 15 O -0.547 6.547 16 C -0.073 4.073 17 H 0.114 0.886 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.084 4.084 21 H 0.092 0.908 22 C -0.156 4.156 23 C -0.081 4.081 24 H 0.081 0.919 25 C -0.146 4.146 26 C -0.093 4.093 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 6.457 15.058 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.280 6.280 14 C 0.291 3.709 15 O -0.438 6.438 16 C -0.092 4.092 17 H 0.132 0.868 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.102 4.102 21 H 0.110 0.890 22 C -0.212 4.212 23 C -0.099 4.099 24 H 0.099 0.901 25 C -0.203 4.203 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.449 6.338 14.564 19.012 hybrid contribution 0.889 -0.264 -1.073 1.418 sum -9.560 6.074 13.491 17.615 Atomic orbital electron populations 1.21698 0.96334 1.00486 1.00012 1.21846 0.94406 0.98143 1.02229 1.20327 0.94486 0.89277 0.78813 0.97957 1.21340 0.90588 1.39985 1.06905 0.91720 1.25810 1.04269 0.93846 0.94296 1.70017 1.37451 1.37943 1.09875 0.85216 0.77675 0.79133 0.77593 1.19139 1.20266 1.19042 1.86466 1.36255 1.63037 1.42231 1.24553 0.79269 0.76044 0.91039 1.90570 1.56015 1.59499 1.37736 1.21200 0.99576 0.98668 0.89790 0.86779 1.21530 1.02075 0.96860 0.94138 1.21568 0.96924 1.00220 0.95594 1.21166 0.95042 0.95732 0.98268 0.88985 1.22013 0.99232 0.98793 1.01211 1.21141 0.98175 0.97256 0.93372 0.90114 1.21853 0.95955 1.00414 1.02101 1.21483 0.93455 0.99547 0.98618 0.94418 0.94792 0.92023 0.89657 0.93620 0.92049 0.92125 0.91555 0.90115 0.90554 0.94010 0.92062 0.91814 0.92583 0.93111 0.90926 0.92100 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.56 71.98 0.62 -5.18 16 2 C -0.13 -6.63 5.49 30.60 0.17 -6.46 16 3 C 0.22 12.55 2.25 29.85 0.07 12.61 16 4 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 5 C -0.55 -31.89 8.90 25.60 0.23 -31.66 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -53.18 11.30 21.45 0.24 -52.93 16 9 Si 0.98 43.39 29.54 68.60 2.03 45.41 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 O -0.36 -17.90 9.71 -51.41 -0.50 -18.40 16 14 C 0.45 19.13 5.71 71.24 0.41 19.54 16 15 O -0.55 -26.53 13.13 21.97 0.29 -26.24 16 16 C -0.07 -2.21 2.63 -11.54 -0.03 -2.24 16 17 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 18 C -0.11 -2.78 4.86 30.60 0.15 -2.63 16 19 C -0.11 -1.87 5.45 30.60 0.17 -1.70 16 20 C -0.08 -1.35 2.72 -10.79 -0.03 -1.38 16 21 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 22 C -0.16 -2.72 8.15 71.98 0.59 -2.13 16 23 C -0.08 -1.49 2.49 -10.80 -0.03 -1.52 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 C -0.15 -2.34 8.84 71.98 0.64 -1.70 16 26 C -0.09 -2.48 3.50 30.59 0.11 -2.37 16 27 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 28 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 4.80 5.95 -2.39 -0.01 4.79 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.27 14.67 8.31 -92.72 -0.77 13.90 16 33 H 0.06 1.65 6.43 -2.39 -0.02 1.63 16 34 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.04 0.92 4.81 -2.39 -0.01 0.91 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 40 H 0.06 0.93 6.43 -2.39 -0.02 0.91 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 1.77 6.39 -2.39 -0.02 1.75 16 44 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -66.07 331.04 6.51 -59.56 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.96 Total: 17.99 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.49 Total: -25.39 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.24 Total: -52.93 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.21 Total: -44.64 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.07 6.51 -59.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.889 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds