Wall clock time and date at job start Mon Mar 30 2020 01:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 H 1.08994 * 109.47549 * 305.00161 * 3 2 1 5 5 C 1.50704 * 109.46954 * 184.99875 * 3 2 1 6 6 H 1.08002 * 120.00117 * 240.00692 * 5 3 2 7 7 C 1.37879 * 119.99531 * 60.00051 * 5 3 2 8 8 N 1.31508 * 120.00282 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99667 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47025 * 90.00164 * 9 7 5 11 11 H 1.48499 * 109.46988 * 210.00195 * 9 7 5 12 12 H 1.48492 * 109.47236 * 330.00275 * 9 7 5 13 13 O 1.45203 * 109.47080 * 65.00347 * 3 2 1 14 14 C 1.34226 * 116.99798 * 269.99248 * 13 3 2 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 18 18 C 1.53002 * 109.46966 * 300.00390 * 16 14 13 19 19 C 1.53006 * 109.46711 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47445 * 59.99695 * 19 18 16 21 21 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46974 * 60.00243 * 20 19 18 23 23 C 1.53002 * 109.47092 * 300.00075 * 20 19 18 24 24 H 1.09000 * 109.46497 * 180.02562 * 23 20 19 25 25 C 1.52996 * 109.46969 * 299.99940 * 23 20 19 26 26 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 27 27 H 1.08999 * 109.46906 * 299.99972 * 1 2 3 28 28 H 1.09006 * 109.46827 * 59.99517 * 1 2 3 29 29 H 1.08996 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46906 * 240.00028 * 2 1 3 31 31 H 1.08996 * 109.46914 * 120.00510 * 2 1 3 32 32 H 0.97001 * 120.00298 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47075 * 299.99352 * 18 16 14 34 34 H 1.08996 * 109.47407 * 60.00310 * 18 16 14 35 35 H 1.09001 * 109.46726 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.46589 * 299.99365 * 19 18 16 37 37 H 1.08998 * 109.46884 * 59.99622 * 22 20 19 38 38 H 1.08993 * 109.46765 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.46866 * 299.99774 * 22 20 19 40 40 H 1.08996 * 109.47452 * 59.99938 * 25 23 20 41 41 H 1.09001 * 109.46997 * 180.02562 * 25 23 20 42 42 H 1.09000 * 109.47054 * 300.00097 * 25 23 20 43 43 H 1.09001 * 109.47194 * 299.99742 * 26 16 14 44 44 H 1.08992 * 109.47399 * 59.99914 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0718 -0.6889 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2191 2.7370 0.2656 16 6 0.0070 3.4216 2.5088 17 1 0.7240 4.1957 2.7823 18 6 -0.1038 2.4043 3.6463 19 6 -0.5773 3.1110 4.9181 20 6 -1.9458 3.7480 4.6683 21 1 -2.2833 4.2510 5.5745 22 6 -2.9518 2.6610 4.2843 23 6 -1.8349 4.7652 3.5308 24 1 -2.8098 5.2192 3.3532 25 6 -0.8289 5.8521 3.9149 26 6 -1.3616 4.0584 2.2596 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0603 -2.9503 33 1 -0.8208 1.6302 3.3729 34 1 0.8710 1.9503 3.8240 35 1 -0.6567 2.3863 5.7283 36 1 0.1394 3.8854 5.1917 37 1 -3.0307 1.9363 5.0947 38 1 -3.9265 3.1148 4.1059 39 1 -2.6145 2.1576 3.3782 40 1 0.1460 5.3984 4.0929 41 1 -0.7503 6.5770 3.1047 42 1 -1.1662 6.3555 4.8209 43 1 -1.2830 4.7831 1.4491 44 1 -2.0783 3.2841 1.9863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:06 Heat of formation + Delta-G solvation = -128.678066 kcal Electronic energy + Delta-G solvation = -22066.117919 eV Core-core repulsion = 18981.948772 eV Total energy + Delta-G solvation = -3084.169147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33931 -38.74974 -35.70447 -33.49506 -32.24932 -31.90065 -31.25657 -28.61590 -27.28819 -25.16703 -23.63584 -22.86643 -22.06009 -20.51155 -19.32278 -17.93790 -17.10756 -16.48690 -15.97685 -15.36641 -15.03464 -14.72031 -14.45483 -13.79562 -13.67666 -13.13170 -12.97318 -12.74318 -12.58603 -12.35726 -12.12494 -11.91746 -11.58864 -11.43236 -11.34918 -11.22068 -11.11941 -11.02029 -10.95655 -10.87321 -10.61788 -10.29099 -10.23512 -10.04492 -9.88596 -9.75768 -9.39898 -9.25403 -8.76773 -8.42700 -6.16337 -4.23214 3.11051 3.25384 3.30937 3.34701 3.75471 4.34793 4.60720 4.69857 4.77065 5.13610 5.14716 5.15668 5.24661 5.31788 5.38101 5.47834 5.62400 5.63934 5.75970 5.78384 5.86701 5.89419 5.96610 6.01334 6.09271 6.16596 6.22972 6.25871 6.30077 6.31687 6.36926 6.47536 6.50461 6.57977 6.90691 7.00837 7.20372 7.32115 7.64747 7.77520 8.00464 8.20016 8.70250 8.95663 9.42161 10.90415 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029952 B = 0.004780 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.601136 B = 5855.845478 C = 6167.043988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.045 0.955 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.519 6.519 16 C -0.082 4.082 17 H 0.101 0.899 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.088 4.088 21 H 0.067 0.933 22 C -0.153 4.153 23 C -0.085 4.085 24 H 0.071 0.929 25 C -0.154 4.154 26 C -0.099 4.099 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 6.059 13.027 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.101 4.101 17 H 0.119 0.881 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.106 4.106 21 H 0.086 0.914 22 C -0.211 4.211 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.211 4.211 26 C -0.136 4.136 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.638 5.933 12.519 16.877 hybrid contribution 0.907 -0.117 -0.347 0.978 sum -8.731 5.816 12.172 16.069 Atomic orbital electron populations 1.21855 0.98423 0.98867 1.00764 1.22002 0.92595 0.99436 1.03234 1.20632 0.94907 0.88755 0.78911 0.93676 1.21054 0.89795 1.38819 1.06154 0.91417 1.24881 0.99147 0.94824 0.95083 1.69891 1.35322 1.37932 1.09470 0.86305 0.84048 0.78654 0.77320 1.20373 1.20992 1.19659 1.86468 1.34454 1.62427 1.43833 1.23343 0.80666 0.76861 0.89468 1.90588 1.55622 1.58577 1.36124 1.21043 0.98610 0.98345 0.92103 0.88082 1.21525 1.02678 0.97294 0.93400 1.21610 0.96499 0.99762 0.97237 1.21145 0.95596 0.95980 0.97878 0.91443 1.21964 0.98504 0.98608 1.01978 1.21130 0.99077 0.95395 0.94776 0.91094 1.21973 0.99809 0.98255 1.01044 1.21455 0.95033 1.00135 0.97001 0.94888 0.92892 0.94938 0.87456 0.94077 0.92440 0.91341 0.90435 0.91795 0.91439 0.92913 0.92985 0.91728 0.91869 0.92666 0.92944 0.91271 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16 2 C -0.13 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.85 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.66 8.90 -34.44 -0.31 -14.97 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 O -0.36 -8.47 9.71 -39.25 -0.38 -8.85 16 14 C 0.45 9.43 5.71 36.01 0.21 9.63 16 15 O -0.52 -12.03 13.12 -18.75 -0.25 -12.27 16 16 C -0.08 -1.24 2.35 -91.77 -0.22 -1.46 16 17 H 0.10 1.43 6.43 -51.93 -0.33 1.10 16 18 C -0.11 -1.48 4.86 -26.73 -0.13 -1.61 16 19 C -0.11 -1.17 5.18 -26.73 -0.14 -1.31 16 20 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 C -0.15 -1.51 8.50 37.16 0.32 -1.19 16 23 C -0.09 -0.88 2.72 -90.64 -0.25 -1.13 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 C -0.15 -1.47 8.50 37.16 0.32 -1.16 16 26 C -0.10 -1.33 3.74 -26.75 -0.10 -1.43 16 27 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 28 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 34 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 40 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.07 1.05 6.38 -51.93 -0.33 0.72 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -29.61 327.63 -8.04 -37.65 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.42 Total: 1.64 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.53 Total: -14.58 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.63 Total: -21.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.61 -8.04 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.029 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds