Wall clock time and date at job start Mon Mar 30 2020 01:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 H 1.08994 * 109.47549 * 305.00161 * 3 2 1 5 5 C 1.50704 * 109.46954 * 184.99875 * 3 2 1 6 6 H 1.08002 * 120.00117 * 240.00692 * 5 3 2 7 7 C 1.37879 * 119.99531 * 60.00051 * 5 3 2 8 8 N 1.31508 * 120.00282 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99667 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47025 * 90.00164 * 9 7 5 11 11 H 1.48499 * 109.46988 * 210.00195 * 9 7 5 12 12 H 1.48492 * 109.47236 * 330.00275 * 9 7 5 13 13 O 1.45203 * 109.47080 * 65.00347 * 3 2 1 14 14 C 1.34226 * 116.99798 * 269.99248 * 13 3 2 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 18 18 C 1.53002 * 109.46966 * 300.00390 * 16 14 13 19 19 C 1.53006 * 109.46711 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47445 * 59.99695 * 19 18 16 21 21 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46974 * 60.00243 * 20 19 18 23 23 C 1.53002 * 109.47092 * 300.00075 * 20 19 18 24 24 H 1.09000 * 109.46497 * 180.02562 * 23 20 19 25 25 C 1.52996 * 109.46969 * 299.99940 * 23 20 19 26 26 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 27 27 H 1.08999 * 109.46906 * 299.99972 * 1 2 3 28 28 H 1.09006 * 109.46827 * 59.99517 * 1 2 3 29 29 H 1.08996 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46906 * 240.00028 * 2 1 3 31 31 H 1.08996 * 109.46914 * 120.00510 * 2 1 3 32 32 H 0.97001 * 120.00298 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47075 * 299.99352 * 18 16 14 34 34 H 1.08996 * 109.47407 * 60.00310 * 18 16 14 35 35 H 1.09001 * 109.46726 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.46589 * 299.99365 * 19 18 16 37 37 H 1.08998 * 109.46884 * 59.99622 * 22 20 19 38 38 H 1.08993 * 109.46765 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.46866 * 299.99774 * 22 20 19 40 40 H 1.08996 * 109.47452 * 59.99938 * 25 23 20 41 41 H 1.09001 * 109.46997 * 180.02562 * 25 23 20 42 42 H 1.09000 * 109.47054 * 300.00097 * 25 23 20 43 43 H 1.09001 * 109.47194 * 299.99742 * 26 16 14 44 44 H 1.08992 * 109.47399 * 59.99914 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0718 -0.6889 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2191 2.7370 0.2656 16 6 0.0070 3.4216 2.5088 17 1 0.7240 4.1957 2.7823 18 6 -0.1038 2.4043 3.6463 19 6 -0.5773 3.1110 4.9181 20 6 -1.9458 3.7480 4.6683 21 1 -2.2833 4.2510 5.5745 22 6 -2.9518 2.6610 4.2843 23 6 -1.8349 4.7652 3.5308 24 1 -2.8098 5.2192 3.3532 25 6 -0.8289 5.8521 3.9149 26 6 -1.3616 4.0584 2.2596 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0603 -2.9503 33 1 -0.8208 1.6302 3.3729 34 1 0.8710 1.9503 3.8240 35 1 -0.6567 2.3863 5.7283 36 1 0.1394 3.8854 5.1917 37 1 -3.0307 1.9363 5.0947 38 1 -3.9265 3.1148 4.1059 39 1 -2.6145 2.1576 3.3782 40 1 0.1460 5.3984 4.0929 41 1 -0.7503 6.5770 3.1047 42 1 -1.1662 6.3555 4.8209 43 1 -1.2830 4.7831 1.4491 44 1 -2.0783 3.2841 1.9863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:05 Heat of formation + Delta-G solvation = -143.230975 kcal Electronic energy + Delta-G solvation = -22066.748980 eV Core-core repulsion = 18981.948772 eV Total energy + Delta-G solvation = -3084.800208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78227 -40.08911 -37.57244 -35.51185 -33.60795 -33.08233 -32.77946 -29.52884 -29.30154 -26.29897 -25.23327 -24.38197 -23.00959 -22.22535 -21.11231 -18.99079 -18.91657 -18.29671 -17.45020 -17.00868 -16.66593 -16.13850 -15.61268 -14.98365 -14.91953 -14.67571 -14.56649 -14.05272 -13.65298 -13.56733 -13.42354 -13.34242 -13.15435 -13.09329 -12.95816 -12.81350 -12.55517 -12.49843 -12.18991 -12.12714 -11.95861 -11.79546 -11.75883 -11.47038 -11.30814 -10.98974 -10.87474 -10.82476 -10.76636 -10.52150 -8.28090 -6.45177 1.40011 1.41745 1.43104 1.53827 2.08449 2.42919 3.01297 3.62549 3.73953 3.74952 4.13132 4.17907 4.25021 4.32974 4.34919 4.37089 4.38181 4.45221 4.56635 4.58986 4.72356 4.80822 4.82779 4.94505 4.99817 5.05392 5.06356 5.07685 5.16077 5.18413 5.20248 5.22665 5.34524 5.39249 5.43457 5.46765 5.51171 5.57216 5.66340 5.68852 5.98659 6.15946 6.60388 7.04209 7.27644 8.78712 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029952 B = 0.004780 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.601136 B = 5855.845478 C = 6167.043988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.364 6.364 14 C 0.445 3.555 15 O -0.547 6.547 16 C -0.073 4.073 17 H 0.115 0.885 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.084 4.084 21 H 0.092 0.908 22 C -0.154 4.154 23 C -0.079 4.079 24 H 0.083 0.917 25 C -0.154 4.154 26 C -0.095 4.095 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 6.595 15.279 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.280 6.280 14 C 0.290 3.710 15 O -0.439 6.439 16 C -0.092 4.092 17 H 0.133 0.867 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.102 4.102 21 H 0.110 0.890 22 C -0.211 4.211 23 C -0.097 4.097 24 H 0.101 0.899 25 C -0.211 4.211 26 C -0.132 4.132 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.665 6.475 14.787 18.815 hybrid contribution 0.844 -0.262 -1.086 1.400 sum -8.821 6.213 13.701 17.439 Atomic orbital electron populations 1.21700 0.96343 1.00486 1.00014 1.21842 0.94397 0.98129 1.02220 1.20331 0.94503 0.89284 0.78816 0.97967 1.21333 0.90564 1.39966 1.06888 0.91731 1.25806 1.04256 0.93849 0.94306 1.70015 1.37451 1.37967 1.09859 0.85217 0.77695 0.79129 0.77591 1.19144 1.20271 1.19047 1.86467 1.36269 1.63036 1.42224 1.24583 0.79272 0.76030 0.91080 1.90569 1.56018 1.59502 1.37762 1.21215 0.99653 0.98568 0.89725 0.86738 1.21531 1.02070 0.96854 0.94167 1.21609 0.97079 1.00200 0.95595 1.21164 0.95053 0.95641 0.98358 0.88958 1.21963 0.98952 0.98895 1.01311 1.21121 0.99786 0.95608 0.93217 0.89854 1.21978 0.99320 0.97905 1.01873 1.21451 0.93635 0.99547 0.98603 0.94407 0.94802 0.92020 0.89665 0.93629 0.92052 0.92099 0.91576 0.90202 0.90328 0.91922 0.92173 0.93936 0.92271 0.93108 0.90845 0.92776 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.57 71.98 0.62 -5.18 16 2 C -0.13 -6.61 5.49 30.60 0.17 -6.44 16 3 C 0.22 12.53 2.25 29.85 0.07 12.60 16 4 H 0.00 0.16 7.16 -2.39 -0.02 0.14 16 5 C -0.55 -31.83 8.90 25.60 0.23 -31.60 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.92 -53.17 11.29 21.45 0.24 -52.93 16 9 Si 0.98 43.38 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 O -0.36 -17.92 9.71 -51.38 -0.50 -18.42 16 14 C 0.45 19.13 5.71 71.24 0.41 19.53 16 15 O -0.55 -26.56 13.12 21.97 0.29 -26.28 16 16 C -0.07 -2.20 2.35 -11.54 -0.03 -2.22 16 17 H 0.11 3.17 6.43 -2.39 -0.02 3.15 16 18 C -0.11 -2.79 4.86 30.60 0.15 -2.64 16 19 C -0.11 -1.91 5.18 30.60 0.16 -1.75 16 20 C -0.08 -1.35 2.72 -10.79 -0.03 -1.38 16 21 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 22 C -0.15 -2.68 8.50 71.98 0.61 -2.07 16 23 C -0.08 -1.45 2.72 -10.81 -0.03 -1.48 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 C -0.15 -2.53 8.50 71.98 0.61 -1.91 16 26 C -0.09 -2.51 3.74 30.58 0.11 -2.40 16 27 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 28 H 0.03 1.63 7.80 -2.38 -0.02 1.61 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 4.80 5.95 -2.39 -0.01 4.78 16 31 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.06 1.65 6.43 -2.39 -0.02 1.64 16 34 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.26 6.43 -2.39 -0.02 1.25 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 0.93 4.81 -2.39 -0.01 0.92 16 40 H 0.06 1.02 4.81 -2.39 -0.01 1.01 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 44 H 0.06 1.77 6.38 -2.39 -0.02 1.75 16 Total: -1.00 -66.03 327.63 6.52 -59.51 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.97 Total: 18.23 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 3.49 Total: -25.52 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.24 Total: -52.93 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.21 Total: -44.69 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.03 6.52 -59.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.718 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds