Wall clock time and date at job start Mon Mar 30 2020 01:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 O 1.45200 * 109.46596 * 65.00399 * 3 2 1 14 14 C 1.34232 * 117.00036 * 269.99777 * 13 3 2 15 15 O 1.20826 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.46972 * 59.99803 * 16 14 13 18 18 C 1.53005 * 109.46811 * 299.99964 * 16 14 13 19 19 C 1.52999 * 109.46621 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47634 * 60.00088 * 19 18 16 21 21 H 1.09005 * 109.47050 * 59.99194 * 20 19 18 22 22 C 1.52999 * 109.47634 * 180.02562 * 20 19 18 23 23 C 1.53001 * 109.46794 * 300.00265 * 20 19 18 24 24 H 1.09010 * 109.47137 * 179.97438 * 23 20 19 25 25 C 1.53005 * 109.47084 * 299.99295 * 23 20 19 26 26 C 1.52991 * 109.47610 * 59.99737 * 23 20 19 27 27 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 28 28 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 29 29 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 31 31 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47102 * 300.00212 * 18 16 14 34 34 H 1.08997 * 109.47261 * 60.00425 * 18 16 14 35 35 H 1.08999 * 109.46874 * 180.02562 * 19 18 16 36 36 H 1.09007 * 109.47071 * 299.99441 * 19 18 16 37 37 H 1.08999 * 109.46891 * 59.99585 * 22 20 19 38 38 H 1.08997 * 109.47132 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.46385 * 299.99976 * 22 20 19 40 40 H 1.09002 * 109.46656 * 59.99920 * 25 23 20 41 41 H 1.08997 * 109.47429 * 180.02562 * 25 23 20 42 42 H 1.09006 * 109.47053 * 300.00709 * 25 23 20 43 43 H 1.09000 * 109.47331 * 180.02562 * 26 23 20 44 44 H 1.08996 * 109.47395 * 60.00018 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7253 1.2561 15 8 -0.2193 2.7370 0.2658 16 6 0.0075 3.4224 2.5087 17 1 0.7246 4.1967 2.7813 18 6 -0.1028 2.4059 3.6469 19 6 -0.5758 3.1134 4.9184 20 6 -1.9444 3.7501 4.6688 21 1 -2.6611 2.9755 4.3960 22 6 -2.4170 4.4582 5.9401 23 6 -1.8340 4.7665 3.5305 24 1 -2.8092 5.2198 3.3524 25 6 -0.8280 5.8538 3.9134 26 6 -1.3612 4.0590 2.2591 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8287 -0.0519 -2.9548 33 1 -0.8198 1.6315 3.3743 34 1 0.8721 1.9520 3.8245 35 1 -0.6539 2.3894 5.7294 36 1 0.1411 3.8880 5.1912 37 1 -1.7001 5.2328 6.2124 38 1 -3.3922 4.9114 5.7623 39 1 -2.4955 3.7343 6.7513 40 1 0.1471 5.4002 4.0913 41 1 -0.7497 6.5781 3.1027 42 1 -1.1649 6.3578 4.8193 43 1 -1.2822 4.7832 1.4483 44 1 -2.0779 3.2844 1.9863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:08 Heat of formation + Delta-G solvation = -131.056247 kcal Electronic energy + Delta-G solvation = -21876.592496 eV Core-core repulsion = 18792.320223 eV Total energy + Delta-G solvation = -3084.272273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23159 -38.70165 -35.72525 -33.52167 -32.82237 -31.72428 -31.29535 -27.82814 -27.27972 -26.09662 -23.34873 -22.36161 -22.30087 -20.39524 -19.30613 -18.42587 -17.08663 -16.53528 -15.80999 -15.48203 -14.94383 -14.57711 -14.26062 -14.04247 -13.59298 -13.31591 -12.98094 -12.76297 -12.65788 -12.43818 -12.04069 -11.89908 -11.63064 -11.41996 -11.35927 -11.22678 -11.11137 -11.03908 -10.92204 -10.75013 -10.63557 -10.43524 -10.25584 -10.10930 -9.90431 -9.75292 -9.40731 -9.26166 -8.77003 -8.42426 -6.16078 -4.23144 3.10953 3.27184 3.30726 3.33094 3.75494 4.34969 4.59962 4.65751 4.76986 5.08758 5.10291 5.15805 5.25270 5.35035 5.40176 5.45606 5.55722 5.59970 5.70444 5.75458 5.84656 5.87069 5.95698 6.01119 6.07368 6.19983 6.23357 6.24185 6.27688 6.31697 6.34910 6.45202 6.49919 6.54468 6.90900 7.01010 7.20548 7.32183 7.64692 7.77564 8.00484 8.20114 8.70149 8.95494 9.42213 10.90655 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.004500 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.388206 B = 6220.855235 C = 6481.573434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.045 0.955 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.519 6.519 16 C -0.082 4.082 17 H 0.102 0.898 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.090 4.090 21 H 0.069 0.931 22 C -0.148 4.148 23 C -0.085 4.085 24 H 0.071 0.929 25 C -0.156 4.156 26 C -0.097 4.097 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 6.641 13.560 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.272 6.272 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.101 4.101 17 H 0.120 0.880 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.109 4.109 21 H 0.088 0.912 22 C -0.205 4.205 23 C -0.103 4.103 24 H 0.089 0.911 25 C -0.213 4.213 26 C -0.135 4.135 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.460 6.511 13.051 17.384 hybrid contribution 0.900 -0.122 -0.370 0.981 sum -8.560 6.389 12.681 16.580 Atomic orbital electron populations 1.21854 0.98419 0.98877 1.00772 1.22002 0.92593 0.99440 1.03230 1.20628 0.94880 0.88754 0.78901 0.93682 1.21015 0.89809 1.39061 1.06050 0.91457 1.24879 0.99156 0.94805 0.95079 1.69882 1.35439 1.37938 1.09363 0.86359 0.84008 0.78465 0.77447 1.19950 1.21050 1.20019 1.86468 1.34437 1.62439 1.43842 1.23343 0.80668 0.76867 0.89464 1.90588 1.55610 1.58584 1.36127 1.21054 0.98637 0.98344 0.92112 0.88032 1.21487 1.02721 0.97147 0.93377 1.21630 0.96555 0.99696 0.97158 1.21186 0.97324 0.97450 0.94903 0.91207 1.21885 1.00917 1.00477 0.97252 1.21129 0.99132 0.95589 0.94446 0.91100 1.22028 0.99753 0.98301 1.01170 1.21428 0.94958 1.00037 0.97045 0.94880 0.92892 0.94932 0.87472 0.94060 0.92377 0.91665 0.90329 0.91797 0.91406 0.92361 0.92937 0.92944 0.91902 0.92763 0.92579 0.91154 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.85 16 2 C -0.13 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.87 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.71 8.89 -34.44 -0.31 -15.02 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.29 11.30 55.43 0.63 -24.67 16 9 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 O -0.36 -8.48 9.71 -39.26 -0.38 -8.87 16 14 C 0.45 9.45 5.71 36.01 0.21 9.66 16 15 O -0.52 -12.07 13.12 -18.75 -0.25 -12.32 16 16 C -0.08 -1.25 2.35 -91.77 -0.22 -1.47 16 17 H 0.10 1.44 6.43 -51.93 -0.33 1.11 16 18 C -0.11 -1.46 5.14 -26.73 -0.14 -1.60 16 19 C -0.11 -1.16 4.93 -26.73 -0.13 -1.30 16 20 C -0.09 -0.87 2.50 -90.62 -0.23 -1.10 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 C -0.15 -1.18 8.84 37.16 0.33 -0.86 16 23 C -0.08 -0.87 2.72 -90.62 -0.25 -1.12 16 24 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 25 C -0.16 -1.49 8.15 37.16 0.30 -1.19 16 26 C -0.10 -1.31 4.02 -26.74 -0.11 -1.41 16 27 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 28 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.11 2.92 5.96 -51.93 -0.31 2.61 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.12 8.11 -51.93 -0.42 0.69 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.67 6.43 -51.92 -0.33 0.33 16 37 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 43 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -29.66 331.04 -8.15 -37.81 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.60 Total: 1.18 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.52 Total: -14.26 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.63 Total: -24.67 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.63 Total: -21.19 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.66 -8.15 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.243 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds