Wall clock time and date at job start Mon Mar 30 2020 01:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 O 1.45200 * 109.46596 * 65.00399 * 3 2 1 14 14 C 1.34232 * 117.00036 * 269.99777 * 13 3 2 15 15 O 1.20826 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.46972 * 59.99803 * 16 14 13 18 18 C 1.53005 * 109.46811 * 299.99964 * 16 14 13 19 19 C 1.52999 * 109.46621 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47634 * 60.00088 * 19 18 16 21 21 H 1.09005 * 109.47050 * 59.99194 * 20 19 18 22 22 C 1.52999 * 109.47634 * 180.02562 * 20 19 18 23 23 C 1.53001 * 109.46794 * 300.00265 * 20 19 18 24 24 H 1.09010 * 109.47137 * 179.97438 * 23 20 19 25 25 C 1.53005 * 109.47084 * 299.99295 * 23 20 19 26 26 C 1.52991 * 109.47610 * 59.99737 * 23 20 19 27 27 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 28 28 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 29 29 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 31 31 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47102 * 300.00212 * 18 16 14 34 34 H 1.08997 * 109.47261 * 60.00425 * 18 16 14 35 35 H 1.08999 * 109.46874 * 180.02562 * 19 18 16 36 36 H 1.09007 * 109.47071 * 299.99441 * 19 18 16 37 37 H 1.08999 * 109.46891 * 59.99585 * 22 20 19 38 38 H 1.08997 * 109.47132 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.46385 * 299.99976 * 22 20 19 40 40 H 1.09002 * 109.46656 * 59.99920 * 25 23 20 41 41 H 1.08997 * 109.47429 * 180.02562 * 25 23 20 42 42 H 1.09006 * 109.47053 * 300.00709 * 25 23 20 43 43 H 1.09000 * 109.47331 * 180.02562 * 26 23 20 44 44 H 1.08996 * 109.47395 * 60.00018 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7253 1.2561 15 8 -0.2193 2.7370 0.2658 16 6 0.0075 3.4224 2.5087 17 1 0.7246 4.1967 2.7813 18 6 -0.1028 2.4059 3.6469 19 6 -0.5758 3.1134 4.9184 20 6 -1.9444 3.7501 4.6688 21 1 -2.6611 2.9755 4.3960 22 6 -2.4170 4.4582 5.9401 23 6 -1.8340 4.7665 3.5305 24 1 -2.8092 5.2198 3.3524 25 6 -0.8280 5.8538 3.9134 26 6 -1.3612 4.0590 2.2591 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8287 -0.0519 -2.9548 33 1 -0.8198 1.6315 3.3743 34 1 0.8721 1.9520 3.8245 35 1 -0.6539 2.3894 5.7294 36 1 0.1411 3.8880 5.1912 37 1 -1.7001 5.2328 6.2124 38 1 -3.3922 4.9114 5.7623 39 1 -2.4955 3.7343 6.7513 40 1 0.1471 5.4002 4.0913 41 1 -0.7497 6.5781 3.1027 42 1 -1.1649 6.3578 4.8193 43 1 -1.2822 4.7832 1.4483 44 1 -2.0779 3.2844 1.9863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:07 Heat of formation + Delta-G solvation = -145.513217 kcal Electronic energy + Delta-G solvation = -21877.219397 eV Core-core repulsion = 18792.320223 eV Total energy + Delta-G solvation = -3084.899174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72686 -39.98543 -37.58704 -35.51457 -34.00162 -33.27328 -32.62383 -29.41949 -28.58343 -27.14863 -25.26533 -23.70650 -23.27321 -22.06379 -21.03158 -19.38694 -18.91696 -18.40005 -17.38468 -17.10235 -16.55436 -16.06987 -15.36077 -14.97606 -14.92598 -14.82863 -14.45743 -14.26733 -13.80526 -13.46233 -13.41462 -13.28443 -13.21272 -13.10605 -12.79361 -12.73590 -12.61568 -12.50579 -12.19531 -12.12787 -12.00522 -11.77465 -11.70531 -11.45714 -11.33469 -11.07134 -10.89139 -10.83827 -10.80252 -10.52410 -8.27903 -6.45216 1.39849 1.41634 1.44516 1.52513 2.07924 2.42953 3.01405 3.61527 3.71483 3.75668 4.09057 4.14723 4.24922 4.33409 4.34802 4.37347 4.41955 4.43135 4.56408 4.59512 4.75930 4.77280 4.82413 4.94915 5.01735 5.05084 5.07209 5.09965 5.15109 5.19964 5.21361 5.23764 5.30462 5.35024 5.41719 5.48957 5.51379 5.54937 5.66309 5.71544 5.98466 6.15745 6.60178 7.03762 7.27539 8.78706 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.004500 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.388206 B = 6220.855235 C = 6481.573434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.269 1.269 13 O -0.363 6.363 14 C 0.445 3.555 15 O -0.547 6.547 16 C -0.073 4.073 17 H 0.116 0.884 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.089 4.089 21 H 0.065 0.935 22 C -0.144 4.144 23 C -0.078 4.078 24 H 0.083 0.917 25 C -0.156 4.156 26 C -0.093 4.093 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 7.187 15.729 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.194 1.194 13 O -0.280 6.280 14 C 0.290 3.710 15 O -0.439 6.439 16 C -0.092 4.092 17 H 0.134 0.866 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.107 4.107 21 H 0.084 0.916 22 C -0.201 4.201 23 C -0.096 4.096 24 H 0.101 0.899 25 C -0.212 4.212 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.407 7.065 15.238 19.252 hybrid contribution 0.816 -0.270 -1.084 1.383 sum -8.591 6.795 14.155 17.898 Atomic orbital electron populations 1.21701 0.96346 1.00508 1.00020 1.21845 0.94395 0.98143 1.02232 1.20328 0.94484 0.89281 0.78807 0.97956 1.21312 0.90595 1.40195 1.06810 0.91677 1.25810 1.04281 0.93828 0.94307 1.70010 1.37548 1.37985 1.09738 0.85270 0.77650 0.78792 0.77926 1.18807 1.20182 1.19396 1.86466 1.36232 1.63034 1.42232 1.24576 0.79286 0.76039 0.91064 1.90570 1.56013 1.59512 1.37764 1.21227 0.99679 0.98579 0.89731 0.86628 1.21495 1.02173 0.96686 0.94097 1.21617 0.97088 1.00087 0.95555 1.21180 0.96824 0.97220 0.95513 0.91648 1.21842 1.01370 1.00658 0.96204 1.21111 0.99823 0.95784 0.92900 0.89904 1.22035 0.99254 0.97962 1.01991 1.21429 0.93550 0.99462 0.98656 0.94405 0.94797 0.91998 0.89675 0.93595 0.92040 0.92429 0.91351 0.90260 0.90399 0.91670 0.92273 0.92207 0.92299 0.93118 0.90576 0.92521 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.20 16 2 C -0.13 -6.62 5.49 30.60 0.17 -6.46 16 3 C 0.22 12.55 2.25 29.85 0.07 12.61 16 4 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 5 C -0.55 -31.92 8.89 25.60 0.23 -31.69 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.98 5.30 84.65 0.45 1.43 16 8 N -0.92 -53.19 11.30 21.45 0.24 -52.95 16 9 Si 0.98 43.34 29.54 68.60 2.03 45.36 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 O -0.36 -17.88 9.71 -51.44 -0.50 -18.38 16 14 C 0.45 19.12 5.71 71.24 0.41 19.53 16 15 O -0.55 -26.58 13.12 21.96 0.29 -26.30 16 16 C -0.07 -2.21 2.35 -11.54 -0.03 -2.24 16 17 H 0.12 3.19 6.43 -2.39 -0.02 3.18 16 18 C -0.11 -2.75 5.14 30.60 0.16 -2.59 16 19 C -0.11 -1.92 4.93 30.59 0.15 -1.77 16 20 C -0.09 -1.48 2.50 -10.80 -0.03 -1.51 16 21 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 22 C -0.14 -1.78 8.84 71.98 0.64 -1.15 16 23 C -0.08 -1.45 2.72 -10.79 -0.03 -1.48 16 24 H 0.08 1.39 8.14 -2.38 -0.02 1.38 16 25 C -0.16 -2.59 8.15 71.98 0.59 -2.00 16 26 C -0.09 -2.48 4.02 30.59 0.12 -2.36 16 27 H 0.04 1.64 6.06 -2.39 -0.01 1.62 16 28 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.09 4.79 5.96 -2.39 -0.01 4.78 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.29 6.43 -2.38 -0.02 1.27 16 37 H 0.06 0.73 6.43 -2.39 -0.02 0.72 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.06 1.03 4.81 -2.39 -0.01 1.02 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.99 6.43 -2.38 -0.02 0.97 16 43 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 44 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -65.88 331.04 6.52 -59.36 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.96 Total: 17.77 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.50 Total: -24.86 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.24 Total: -52.95 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.21 Total: -44.67 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.88 6.52 -59.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.156 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds