Wall clock time and date at job start Mon Mar 30 2020 01:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.43854 * 2 1 4 4 C 1.54892 * 110.59973 * 122.62484 * 2 1 3 5 5 C 1.54965 * 102.77762 * 80.81432 * 4 2 1 6 6 C 1.54261 * 104.16093 * 37.88734 * 5 4 2 7 7 C 1.53006 * 110.03456 * 95.75453 * 6 5 4 8 8 C 1.50704 * 110.03635 * 217.13664 * 6 5 4 9 9 O 1.20828 * 119.99529 * 5.40174 * 8 6 5 10 10 O 1.34225 * 120.00414 * 185.40826 * 8 6 5 11 11 C 1.45205 * 116.99901 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46851 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46959 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00165 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99811 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46970 * 269.99267 * 17 15 13 19 19 H 1.48500 * 109.47378 * 149.99700 * 17 15 13 20 20 H 1.48494 * 109.47278 * 29.99420 * 17 15 13 21 21 C 1.53871 * 106.64206 * 336.44687 * 6 5 4 22 22 C 1.52996 * 110.03431 * 119.25986 * 21 6 5 23 23 C 1.53004 * 110.03412 * 240.64084 * 21 6 5 24 24 H 1.08998 * 109.47615 * 182.53835 * 1 2 3 25 25 H 1.09005 * 109.46489 * 302.53929 * 1 2 3 26 26 H 1.08996 * 109.47204 * 62.53532 * 1 2 3 27 27 H 1.09001 * 110.75281 * 199.09941 * 4 2 1 28 28 H 1.09002 * 110.75316 * 322.28828 * 4 2 1 29 29 H 1.09005 * 110.47530 * 279.23627 * 5 4 2 30 30 H 1.09000 * 110.53005 * 156.56930 * 5 4 2 31 31 H 1.09004 * 109.47317 * 182.09106 * 7 6 5 32 32 H 1.08995 * 109.46762 * 302.09293 * 7 6 5 33 33 H 1.09004 * 109.46716 * 62.09230 * 7 6 5 34 34 H 1.08994 * 109.47062 * 59.99655 * 11 10 8 35 35 H 1.09005 * 109.46713 * 299.99521 * 11 10 8 36 36 H 1.09004 * 109.47178 * 59.99616 * 12 11 10 37 37 H 1.09001 * 109.46894 * 299.99779 * 12 11 10 38 38 H 0.96994 * 120.00085 * 0.02562 * 16 15 13 39 39 H 1.09001 * 109.47263 * 59.99963 * 22 21 6 40 40 H 1.09004 * 109.47247 * 180.02562 * 22 21 6 41 41 H 1.08998 * 109.47238 * 300.00115 * 22 21 6 42 42 H 1.09000 * 109.46954 * 53.75524 * 23 21 6 43 43 H 1.08999 * 109.47162 * 173.75237 * 23 21 6 44 44 H 1.08994 * 109.47247 * 293.75851 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0750 -0.7817 1.2211 5 6 1.9697 -2.2569 0.7585 6 6 2.3488 -2.2117 -0.7361 7 6 3.8320 -2.5441 -0.9110 8 6 1.5058 -3.1903 -1.5125 9 8 0.6154 -3.7918 -0.9600 10 8 1.7443 -3.3940 -2.8176 11 6 0.8926 -4.3505 -3.5019 12 6 1.3118 -4.4474 -4.9702 13 6 0.4284 -5.4405 -5.6803 14 1 -0.3536 -5.9518 -5.1384 15 6 0.6190 -5.6973 -7.0214 16 7 1.5716 -5.0751 -7.6811 17 14 -0.4766 -6.9278 -7.9018 18 1 0.1272 -8.2815 -7.8114 19 1 -0.6098 -6.5396 -9.3289 20 1 -1.8180 -6.9406 -7.2650 21 6 2.0698 -0.7773 -1.2183 22 6 3.3631 -0.1323 -1.7204 23 6 1.0248 -0.7939 -2.3357 24 1 -0.3634 -1.0266 0.0455 25 1 -0.3632 0.5528 0.8664 26 1 -0.3633 0.4739 -0.9118 27 1 3.1124 -0.5130 1.4200 28 1 1.4560 -0.6044 2.1007 29 1 0.9508 -2.6237 0.8826 30 1 2.6712 -2.8818 1.3112 31 1 4.0984 -2.4733 -1.9656 32 1 4.4326 -1.8390 -0.3364 33 1 4.0216 -3.5570 -0.5556 34 1 -0.1447 -4.0215 -3.4415 35 1 0.9919 -5.3280 -3.0300 36 1 2.3494 -4.7761 -5.0309 37 1 1.2122 -3.4697 -5.4417 38 1 2.1402 -4.4359 -7.2241 39 1 3.7632 -0.7172 -2.5486 40 1 3.1553 0.8828 -2.0590 41 1 4.0925 -0.1027 -0.9109 42 1 0.1390 -1.3311 -1.9968 43 1 0.7525 0.2295 -2.5937 44 1 1.4384 -1.2920 -3.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838443141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:47 Heat of formation + Delta-G solvation = -123.550936 kcal Electronic energy + Delta-G solvation = -22129.968826 eV Core-core repulsion = 19046.022008 eV Total energy + Delta-G solvation = -3083.946818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26153 -38.82426 -36.12161 -33.71575 -32.94208 -32.36603 -30.03844 -28.25029 -27.73868 -24.85969 -24.23129 -23.87365 -22.16745 -21.05812 -19.68855 -18.43136 -16.85848 -16.44348 -16.35330 -16.17543 -15.37887 -14.84505 -14.03896 -13.80753 -13.67975 -13.35899 -13.24843 -12.97370 -12.79764 -12.61701 -12.26520 -12.18614 -11.82054 -11.72730 -11.63546 -11.57792 -11.27492 -11.20163 -10.75216 -10.68711 -10.63975 -10.57836 -10.41456 -10.30484 -10.17032 -10.04850 -9.74314 -9.68517 -8.72519 -8.40059 -6.45680 -4.16302 2.60135 3.17462 3.41638 3.44899 3.60884 4.24777 4.31688 4.48717 4.60814 4.96732 5.03361 5.13498 5.18195 5.20991 5.25690 5.33050 5.34302 5.44604 5.58846 5.61672 5.64203 5.73645 5.79268 5.83355 5.88543 5.94333 5.98323 6.00374 6.04365 6.07186 6.08966 6.11595 6.20159 6.33390 6.38691 6.46572 6.53146 6.94246 7.32349 7.34679 8.02939 8.25249 8.35695 8.77266 9.56140 10.95783 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.004300 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.321174 B = 6509.795269 C = 6588.804072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.051 4.051 7 C -0.140 4.140 8 C 0.472 3.528 9 O -0.520 6.520 10 O -0.354 6.354 11 C 0.081 3.919 12 C 0.013 3.987 13 C -0.607 4.607 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.908 5.908 17 Si 1.075 2.925 18 H -0.286 1.286 19 H -0.283 1.283 20 H -0.288 1.288 21 C -0.047 4.047 22 C -0.141 4.141 23 C -0.158 4.158 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 11.449 16.465 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.052 4.052 7 C -0.197 4.197 8 C 0.316 3.684 9 O -0.410 6.410 10 O -0.271 6.271 11 C 0.008 3.992 12 C -0.024 4.024 13 C -0.645 4.645 14 H 0.071 0.929 15 C -0.185 4.185 16 N -0.543 5.543 17 Si 0.903 3.097 18 H -0.213 1.213 19 H -0.208 1.208 20 H -0.214 1.214 21 C -0.047 4.047 22 C -0.198 4.198 23 C -0.215 4.215 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.807 10.534 15.101 18.625 hybrid contribution 0.114 0.507 1.522 1.608 sum 2.921 11.040 16.623 20.168 Atomic orbital electron populations 1.21916 0.94877 1.02270 1.01513 1.22018 0.95877 0.98776 0.93865 0.90561 1.22540 1.00887 0.94566 0.97479 1.22484 1.03482 0.97118 0.91877 1.21261 0.95790 0.93212 0.94923 1.22000 0.92609 1.01549 1.03574 1.23305 0.82568 0.80816 0.81730 1.90594 1.31938 1.47912 1.70523 1.86545 1.58744 1.59299 1.22472 1.23406 0.92426 0.89129 0.94252 1.19273 0.97664 0.97812 0.87609 1.21863 1.19035 1.26374 0.97224 0.92926 1.25883 0.98313 0.99571 0.94701 1.70746 1.18132 1.25816 1.39637 0.83460 0.75057 0.75316 0.75912 1.21291 1.20822 1.21356 1.21123 0.96457 0.91660 0.95464 1.22022 0.96086 1.00300 1.01353 1.22283 0.98326 1.02120 0.98775 0.92225 0.92970 0.92153 0.91384 0.91201 0.89479 0.91073 0.90649 0.91062 0.92537 0.92375 0.92410 0.96358 0.96317 0.91897 0.91489 0.92605 0.92224 0.92538 0.92158 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.94 37.16 0.29 -1.27 16 2 C -0.09 -0.87 3.01 -88.96 -0.27 -1.14 16 3 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 4 C -0.12 -1.09 6.39 -24.70 -0.16 -1.24 16 5 C -0.11 -1.32 5.39 -25.03 -0.14 -1.46 16 6 C -0.05 -0.67 0.88 -154.54 -0.14 -0.81 16 7 C -0.14 -1.64 7.05 37.16 0.26 -1.38 16 8 C 0.47 8.44 4.64 36.01 0.17 8.61 16 9 O -0.52 -10.56 15.14 -18.75 -0.28 -10.85 16 10 O -0.35 -7.07 8.00 -39.24 -0.31 -7.39 16 11 C 0.08 1.84 5.40 37.16 0.20 2.04 16 12 C 0.01 0.35 4.66 -27.88 -0.13 0.22 16 13 C -0.61 -17.44 9.11 -34.44 -0.31 -17.76 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 16 N -0.91 -27.67 13.65 55.43 0.76 -26.92 16 17 Si 1.07 25.29 29.90 -169.99 -5.08 20.21 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.05 -0.55 0.86 -153.39 -0.13 -0.68 16 22 C -0.14 -1.43 7.18 37.16 0.27 -1.16 16 23 C -0.16 -2.20 5.97 37.16 0.22 -1.98 16 24 H 0.06 0.74 6.95 -51.93 -0.36 0.38 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.09 1.20 6.32 -51.93 -0.33 0.87 16 30 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 31 H 0.07 0.94 6.69 -51.93 -0.35 0.60 16 32 H 0.07 0.65 6.69 -51.93 -0.35 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 36 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 38 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 39 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.51 6.72 -51.93 -0.35 0.16 16 42 H 0.06 0.87 5.90 -51.93 -0.31 0.57 16 43 H 0.06 0.73 7.53 -51.93 -0.39 0.34 16 44 H 0.08 1.25 6.45 -51.93 -0.33 0.91 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -31.24 332.11 -7.43 -38.67 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.55 Total: -1.20 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 0.04 Total: -17.54 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.60 Total: -18.23 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.24 -7.43 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838443141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.877 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds