Wall clock time and date at job start Mon Mar 30 2020 01:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.43854 * 2 1 4 4 C 1.54892 * 110.59973 * 122.62484 * 2 1 3 5 5 C 1.54965 * 102.77762 * 80.81432 * 4 2 1 6 6 C 1.54261 * 104.16093 * 37.88734 * 5 4 2 7 7 C 1.53006 * 110.03456 * 95.75453 * 6 5 4 8 8 C 1.50704 * 110.03635 * 217.13664 * 6 5 4 9 9 O 1.20828 * 119.99529 * 5.40174 * 8 6 5 10 10 O 1.34225 * 120.00414 * 185.40826 * 8 6 5 11 11 C 1.45205 * 116.99901 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46851 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46959 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00165 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00109 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99811 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46970 * 269.99267 * 17 15 13 19 19 H 1.48500 * 109.47378 * 149.99700 * 17 15 13 20 20 H 1.48494 * 109.47278 * 29.99420 * 17 15 13 21 21 C 1.53871 * 106.64206 * 336.44687 * 6 5 4 22 22 C 1.52996 * 110.03431 * 119.25986 * 21 6 5 23 23 C 1.53004 * 110.03412 * 240.64084 * 21 6 5 24 24 H 1.08998 * 109.47615 * 182.53835 * 1 2 3 25 25 H 1.09005 * 109.46489 * 302.53929 * 1 2 3 26 26 H 1.08996 * 109.47204 * 62.53532 * 1 2 3 27 27 H 1.09001 * 110.75281 * 199.09941 * 4 2 1 28 28 H 1.09002 * 110.75316 * 322.28828 * 4 2 1 29 29 H 1.09005 * 110.47530 * 279.23627 * 5 4 2 30 30 H 1.09000 * 110.53005 * 156.56930 * 5 4 2 31 31 H 1.09004 * 109.47317 * 182.09106 * 7 6 5 32 32 H 1.08995 * 109.46762 * 302.09293 * 7 6 5 33 33 H 1.09004 * 109.46716 * 62.09230 * 7 6 5 34 34 H 1.08994 * 109.47062 * 59.99655 * 11 10 8 35 35 H 1.09005 * 109.46713 * 299.99521 * 11 10 8 36 36 H 1.09004 * 109.47178 * 59.99616 * 12 11 10 37 37 H 1.09001 * 109.46894 * 299.99779 * 12 11 10 38 38 H 0.96994 * 120.00085 * 0.02562 * 16 15 13 39 39 H 1.09001 * 109.47263 * 59.99963 * 22 21 6 40 40 H 1.09004 * 109.47247 * 180.02562 * 22 21 6 41 41 H 1.08998 * 109.47238 * 300.00115 * 22 21 6 42 42 H 1.09000 * 109.46954 * 53.75524 * 23 21 6 43 43 H 1.08999 * 109.47162 * 173.75237 * 23 21 6 44 44 H 1.08994 * 109.47247 * 293.75851 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0750 -0.7817 1.2211 5 6 1.9697 -2.2569 0.7585 6 6 2.3488 -2.2117 -0.7361 7 6 3.8320 -2.5441 -0.9110 8 6 1.5058 -3.1903 -1.5125 9 8 0.6154 -3.7918 -0.9600 10 8 1.7443 -3.3940 -2.8176 11 6 0.8926 -4.3505 -3.5019 12 6 1.3118 -4.4474 -4.9702 13 6 0.4284 -5.4405 -5.6803 14 1 -0.3536 -5.9518 -5.1384 15 6 0.6190 -5.6973 -7.0214 16 7 1.5716 -5.0751 -7.6811 17 14 -0.4766 -6.9278 -7.9018 18 1 0.1272 -8.2815 -7.8114 19 1 -0.6098 -6.5396 -9.3289 20 1 -1.8180 -6.9406 -7.2650 21 6 2.0698 -0.7773 -1.2183 22 6 3.3631 -0.1323 -1.7204 23 6 1.0248 -0.7939 -2.3357 24 1 -0.3634 -1.0266 0.0455 25 1 -0.3632 0.5528 0.8664 26 1 -0.3633 0.4739 -0.9118 27 1 3.1124 -0.5130 1.4200 28 1 1.4560 -0.6044 2.1007 29 1 0.9508 -2.6237 0.8826 30 1 2.6712 -2.8818 1.3112 31 1 4.0984 -2.4733 -1.9656 32 1 4.4326 -1.8390 -0.3364 33 1 4.0216 -3.5570 -0.5556 34 1 -0.1447 -4.0215 -3.4415 35 1 0.9919 -5.3280 -3.0300 36 1 2.3494 -4.7761 -5.0309 37 1 1.2122 -3.4697 -5.4417 38 1 2.1402 -4.4359 -7.2241 39 1 3.7632 -0.7172 -2.5486 40 1 3.1553 0.8828 -2.0590 41 1 4.0925 -0.1027 -0.9109 42 1 0.1390 -1.3311 -1.9968 43 1 0.7525 0.2295 -2.5937 44 1 1.4384 -1.2920 -3.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838443141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:46 Heat of formation + Delta-G solvation = -139.706748 kcal Electronic energy + Delta-G solvation = -22130.669395 eV Core-core repulsion = 19046.022008 eV Total energy + Delta-G solvation = -3084.647386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49045 -40.13502 -37.77719 -35.86279 -33.92996 -33.31169 -32.06847 -29.24052 -28.68053 -26.77428 -25.41835 -24.81238 -23.81653 -22.78249 -20.66791 -19.79243 -18.81389 -18.13915 -17.80090 -17.31590 -16.48010 -15.96955 -15.67788 -15.37792 -15.23032 -14.65707 -14.43724 -14.08986 -13.85368 -13.83598 -13.68198 -13.56594 -13.24571 -13.12881 -12.84818 -12.70125 -12.53756 -12.48050 -12.28118 -12.17839 -11.92574 -11.65893 -11.56818 -11.53964 -11.47889 -11.32721 -11.23290 -11.11078 -10.84244 -10.62757 -8.80241 -6.52565 1.13950 1.50572 1.60150 1.69057 1.79266 2.52302 3.06784 3.27797 3.36889 3.57469 3.88002 4.00770 4.07205 4.13341 4.17369 4.19717 4.24561 4.37290 4.47843 4.49494 4.59997 4.64707 4.70141 4.75022 4.85060 4.89840 4.95744 4.96387 5.01762 5.06958 5.12745 5.15680 5.18502 5.23291 5.25958 5.33163 5.37916 5.47386 5.50624 5.58808 5.79285 6.03698 6.42448 6.69119 7.29468 8.61676 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.004300 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.321174 B = 6509.795269 C = 6588.804072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.103 0.897 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.050 4.050 7 C -0.139 4.139 8 C 0.467 3.533 9 O -0.549 6.549 10 O -0.357 6.357 11 C 0.097 3.903 12 C 0.020 3.980 13 C -0.628 4.628 14 H 0.053 0.947 15 C -0.029 4.029 16 N -0.928 5.928 17 Si 1.124 2.876 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.270 1.270 21 C -0.047 4.047 22 C -0.138 4.138 23 C -0.155 4.155 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.258 0.742 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 12.669 18.065 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.121 0.879 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.051 4.051 7 C -0.196 4.196 8 C 0.312 3.688 9 O -0.439 6.439 10 O -0.273 6.273 11 C 0.023 3.977 12 C -0.017 4.017 13 C -0.665 4.665 14 H 0.071 0.929 15 C -0.228 4.228 16 N -0.564 5.564 17 Si 0.944 3.056 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.047 4.047 22 C -0.195 4.195 23 C -0.212 4.212 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.530 11.771 16.732 20.760 hybrid contribution -0.123 0.163 1.070 1.089 sum 3.407 11.934 17.802 21.701 Atomic orbital electron populations 1.21908 0.95777 1.00687 1.02210 1.22051 0.95125 0.99907 0.93040 0.87917 1.22556 1.02735 0.91804 0.97296 1.22520 1.02216 0.99623 0.90737 1.21548 0.95852 0.92585 0.95093 1.22051 0.91605 1.02440 1.03481 1.24478 0.82663 0.80947 0.80673 1.90574 1.33409 1.49255 1.70691 1.86566 1.58134 1.58552 1.24091 1.22890 0.92367 0.89685 0.92753 1.19099 0.96501 0.96459 0.89651 1.22238 1.19405 1.26893 0.97969 0.92906 1.27507 0.98736 1.00648 0.95858 1.70875 1.19129 1.26590 1.39805 0.82856 0.74080 0.73642 0.75037 1.19438 1.20258 1.19525 1.21218 0.96830 0.91109 0.95555 1.22019 0.95358 1.00399 1.01714 1.22241 0.98034 1.02390 0.98546 0.95068 0.91015 0.92625 0.88734 0.89891 0.92129 0.89779 0.91878 0.87394 0.92944 0.93021 0.92887 0.97823 0.97805 0.93253 0.93073 0.91328 0.89621 0.94960 0.90360 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.94 71.98 0.57 -2.36 16 2 C -0.08 -1.40 3.01 -9.72 -0.03 -1.43 16 3 H 0.10 1.29 7.84 -2.39 -0.02 1.28 16 4 C -0.11 -1.57 6.39 31.91 0.20 -1.36 16 5 C -0.11 -2.48 5.39 31.69 0.17 -2.31 16 6 C -0.05 -1.28 0.88 -52.20 -0.05 -1.32 16 7 C -0.14 -3.00 7.05 71.98 0.51 -2.49 16 8 C 0.47 17.24 4.64 71.24 0.33 17.57 16 9 O -0.55 -23.23 15.14 21.96 0.33 -22.90 16 10 O -0.36 -14.94 8.00 -51.36 -0.41 -15.35 16 11 C 0.10 4.62 5.40 71.98 0.39 5.01 16 12 C 0.02 1.10 4.66 29.85 0.14 1.24 16 13 C -0.63 -36.92 9.11 25.60 0.23 -36.69 16 14 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 15 C -0.03 -1.70 5.46 84.65 0.46 -1.23 16 16 N -0.93 -57.61 13.65 21.45 0.29 -57.32 16 17 Si 1.12 50.49 29.90 68.60 2.05 52.54 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.05 -1.03 0.86 -51.46 -0.04 -1.08 16 22 C -0.14 -2.42 7.18 71.98 0.52 -1.90 16 23 C -0.16 -4.40 5.97 71.98 0.43 -3.97 16 24 H 0.03 0.78 6.95 -2.39 -0.02 0.76 16 25 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.05 1.12 6.58 -2.39 -0.02 1.11 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16 29 H 0.06 1.67 6.32 -2.38 -0.02 1.65 16 30 H 0.08 1.60 7.84 -2.39 -0.02 1.58 16 31 H 0.06 1.53 6.69 -2.38 -0.02 1.51 16 32 H 0.11 1.54 6.69 -2.39 -0.02 1.52 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 2.50 8.13 -2.39 -0.02 2.48 16 35 H 0.05 2.55 8.13 -2.38 -0.02 2.53 16 36 H 0.00 0.20 8.01 -2.38 -0.02 0.18 16 37 H 0.00 0.21 8.01 -2.39 -0.02 0.19 16 38 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 39 H 0.05 1.07 6.76 -2.39 -0.02 1.05 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.09 1.06 6.72 -2.39 -0.02 1.05 16 42 H 0.03 1.04 5.90 -2.39 -0.01 1.03 16 43 H 0.08 1.87 7.53 -2.39 -0.02 1.85 16 44 H 0.05 1.62 6.45 -2.39 -0.02 1.61 16 Total: -1.00 -69.98 332.11 7.16 -62.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.06 Total: 12.54 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 3.84 Total: -32.34 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.29 Total: -57.32 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.08 Total: -38.25 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Total: -69.98 7.16 -62.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838443141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.885 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds