Wall clock time and date at job start Mon Mar 30 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47280 * 2 1 4 4 C 1.53000 * 109.47473 * 120.00215 * 2 1 3 5 5 C 1.52994 * 109.47429 * 174.99843 * 4 2 1 6 6 C 1.53000 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46986 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46824 * 179.97438 * 7 6 5 9 9 O 1.20823 * 120.00168 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99747 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00216 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47410 * 179.97438 * 11 10 8 13 13 C 1.50702 * 115.55255 * 65.10242 * 12 11 10 14 14 H 1.07996 * 120.00490 * 266.11399 * 13 12 11 15 15 C 1.37878 * 119.99541 * 86.11133 * 13 12 11 16 16 N 1.31521 * 120.00296 * 353.70866 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 173.70678 * 15 13 12 18 18 H 1.48499 * 109.46738 * 60.00339 * 17 15 13 19 19 H 1.48503 * 109.47098 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47261 * 300.00203 * 17 15 13 21 21 C 1.53007 * 117.49662 * 279.43632 * 12 11 10 22 22 C 1.53006 * 117.49922 * 210.78034 * 12 11 10 23 23 H 1.09001 * 109.47222 * 299.99826 * 1 2 3 24 24 H 1.09001 * 109.47037 * 59.99908 * 1 2 3 25 25 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.00174 * 2 1 3 27 27 H 1.08992 * 109.46884 * 300.00021 * 3 2 1 28 28 H 1.08994 * 109.47034 * 60.00282 * 3 2 1 29 29 H 1.09002 * 109.46776 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46921 * 54.99604 * 4 2 1 31 31 H 1.09001 * 109.46875 * 295.00529 * 4 2 1 32 32 H 1.08994 * 109.47347 * 59.99832 * 5 4 2 33 33 H 1.09001 * 109.46950 * 299.99596 * 5 4 2 34 34 H 1.09000 * 109.47480 * 60.00349 * 6 5 4 35 35 H 1.09001 * 109.47475 * 299.99929 * 6 5 4 36 36 H 1.08999 * 109.46908 * 60.00671 * 7 6 5 37 37 H 1.08994 * 109.47444 * 299.99781 * 7 6 5 38 38 H 1.09003 * 109.46985 * 300.00361 * 11 10 8 39 39 H 1.09006 * 109.47101 * 59.99562 * 11 10 8 40 40 H 0.96998 * 120.00160 * 179.97438 * 16 15 13 41 41 H 1.08999 * 117.49779 * 0.02562 * 21 12 11 42 42 H 1.09003 * 117.49863 * 145.02286 * 21 12 11 43 43 H 1.09007 * 117.49431 * 214.98102 * 22 12 11 44 44 H 1.09002 * 117.49715 * 359.96671 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0748 -1.5518 2.4374 7 6 5.5996 -1.6622 2.3758 8 6 6.1021 -2.3716 3.6069 9 8 5.3208 -2.7495 4.4475 10 8 7.4176 -2.5825 3.7700 11 6 7.8297 -3.2724 4.9794 12 6 9.3524 -3.4205 4.9884 13 6 10.1303 -2.1324 5.0704 14 1 10.4740 -1.6506 4.1670 15 6 10.4032 -1.5689 6.2988 16 7 9.8813 -2.0856 7.3899 17 14 11.5141 -0.0715 6.4135 18 1 10.9240 1.0437 5.6304 19 1 11.6482 0.3377 7.8348 20 1 12.8536 -0.4059 5.8667 21 6 9.9563 -4.5592 4.1639 22 6 9.9389 -4.6460 5.6921 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6053 -1.7199 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1674 1.1420 33 1 3.8531 -1.3941 0.3002 34 1 3.6403 -2.5504 2.4838 35 1 3.7866 -0.9885 3.3250 36 1 6.0346 -0.6638 2.3293 37 1 5.8876 -2.2257 1.4884 38 1 7.5149 -2.6978 5.8506 39 1 7.3688 -4.2597 5.0094 40 1 10.0736 -1.6894 8.2541 41 1 9.2688 -5.2025 3.6148 42 1 10.9165 -4.3767 3.6812 43 1 10.8875 -4.5206 6.2142 44 1 9.2398 -5.3464 6.1491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838809425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:57 Heat of formation + Delta-G solvation = -106.072173 kcal Electronic energy + Delta-G solvation = -20170.070264 eV Core-core repulsion = 17086.881382 eV Total energy + Delta-G solvation = -3083.188882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75538 -37.51208 -36.76863 -35.25132 -34.02465 -31.95614 -29.80359 -27.42194 -26.93419 -25.40162 -24.50878 -21.54221 -21.13118 -20.31208 -19.75260 -19.23887 -16.89589 -16.47195 -16.18327 -15.60476 -15.22380 -14.71064 -14.56005 -14.44617 -13.97060 -13.55622 -13.26038 -12.75825 -12.59525 -12.44125 -12.16390 -12.01402 -11.81084 -11.62262 -11.51904 -11.30969 -10.97016 -10.88847 -10.85055 -10.80067 -10.63662 -10.55252 -10.48909 -10.28316 -9.95570 -9.81702 -9.52011 -8.82419 -8.46320 -8.20222 -6.06738 -4.12182 2.82809 3.30031 3.34972 3.37421 3.40634 4.38993 4.52046 4.64902 4.69521 4.94263 5.00925 5.11104 5.22748 5.28467 5.32717 5.36995 5.45971 5.47963 5.57288 5.62721 5.65270 5.72174 5.80245 5.82654 5.91284 5.99293 6.00198 6.06737 6.15399 6.25687 6.27899 6.34206 6.35301 6.54543 6.67590 6.74286 7.03500 7.30175 7.37531 7.49480 7.86272 8.37205 8.50126 8.89315 9.53547 11.02653 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003227 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.108595 B = 8675.933346 C = 9324.997874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.114 4.114 8 C 0.451 3.549 9 O -0.526 6.526 10 O -0.340 6.340 11 C 0.116 3.884 12 C 0.037 3.963 13 C -0.491 4.491 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.145 4.145 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 2.965 -13.096 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.152 4.152 8 C 0.294 3.706 9 O -0.417 6.417 10 O -0.255 6.255 11 C 0.043 3.957 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.183 4.183 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.797 2.862 -12.600 18.903 hybrid contribution 0.558 0.701 0.403 0.982 sum -13.239 3.562 -12.198 18.350 Atomic orbital electron populations 1.21849 0.95492 1.01611 1.01589 1.21135 0.95489 0.96478 0.98574 1.21905 1.01422 0.95926 1.01498 1.21652 0.95466 1.00514 0.97671 1.21658 0.95491 1.00878 0.97783 1.21422 0.92770 1.01837 0.98539 1.21367 0.96900 1.02052 0.94897 1.23656 0.81783 0.77176 0.87959 1.90602 1.57386 1.49233 1.44458 1.86520 1.23881 1.70084 1.44993 1.22871 0.96136 0.93317 0.83424 1.18776 0.88295 0.90272 0.98987 1.20356 1.34164 1.05852 0.92457 0.91912 1.25023 0.95618 0.97083 0.95764 1.69995 1.42856 1.40890 0.98099 0.86640 0.81300 0.83027 0.76958 1.20114 1.21276 1.20128 1.23009 1.02155 1.05122 0.93983 1.22536 1.02239 1.00810 0.92669 0.92744 0.92924 0.92784 0.91326 0.93059 0.92740 0.92227 0.91943 0.91854 0.91508 0.91870 0.91249 0.91097 0.88000 0.88240 0.90727 0.94430 0.92846 0.91578 0.90073 0.89411 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.15 0.34 -0.69 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.01 16 3 C -0.15 -1.11 8.95 37.16 0.33 -0.78 16 4 C -0.12 -0.99 4.68 -26.73 -0.13 -1.11 16 5 C -0.12 -1.10 4.97 -26.73 -0.13 -1.24 16 6 C -0.11 -1.28 4.50 -26.73 -0.12 -1.41 16 7 C -0.11 -1.53 5.81 -27.88 -0.16 -1.70 16 8 C 0.45 8.66 7.96 36.01 0.29 8.95 16 9 O -0.53 -11.41 15.73 -18.75 -0.29 -11.70 16 10 O -0.34 -7.56 10.16 -39.25 -0.40 -7.95 16 11 C 0.12 2.80 5.29 37.15 0.20 3.00 16 12 C 0.04 0.94 1.62 -155.66 -0.25 0.68 16 13 C -0.49 -13.50 8.78 -34.44 -0.30 -13.80 16 14 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 15 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 16 N -0.88 -25.09 12.88 55.43 0.71 -24.37 16 17 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.21 -4.52 9.96 -26.69 -0.27 -4.79 16 22 C -0.15 -3.41 9.37 -26.69 -0.25 -3.66 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 6.56 -51.93 -0.34 0.24 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 2.00 8.13 -51.93 -0.42 1.57 16 39 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -29.94 362.82 -8.60 -38.54 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -8.25 Total: -0.33 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -0.81 Total: -15.76 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.71 Total: -24.37 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.69 Total: -19.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.94 -8.60 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838809425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.534 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds