Wall clock time and date at job start Mon Mar 30 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47280 * 2 1 4 4 C 1.53000 * 109.47473 * 120.00215 * 2 1 3 5 5 C 1.52994 * 109.47429 * 174.99843 * 4 2 1 6 6 C 1.53000 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46986 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46824 * 179.97438 * 7 6 5 9 9 O 1.20823 * 120.00168 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99747 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00216 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47410 * 179.97438 * 11 10 8 13 13 C 1.50702 * 115.55255 * 65.10242 * 12 11 10 14 14 H 1.07996 * 120.00490 * 266.11399 * 13 12 11 15 15 C 1.37878 * 119.99541 * 86.11133 * 13 12 11 16 16 N 1.31521 * 120.00296 * 353.70866 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 173.70678 * 15 13 12 18 18 H 1.48499 * 109.46738 * 60.00339 * 17 15 13 19 19 H 1.48503 * 109.47098 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47261 * 300.00203 * 17 15 13 21 21 C 1.53007 * 117.49662 * 279.43632 * 12 11 10 22 22 C 1.53006 * 117.49922 * 210.78034 * 12 11 10 23 23 H 1.09001 * 109.47222 * 299.99826 * 1 2 3 24 24 H 1.09001 * 109.47037 * 59.99908 * 1 2 3 25 25 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.00174 * 2 1 3 27 27 H 1.08992 * 109.46884 * 300.00021 * 3 2 1 28 28 H 1.08994 * 109.47034 * 60.00282 * 3 2 1 29 29 H 1.09002 * 109.46776 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46921 * 54.99604 * 4 2 1 31 31 H 1.09001 * 109.46875 * 295.00529 * 4 2 1 32 32 H 1.08994 * 109.47347 * 59.99832 * 5 4 2 33 33 H 1.09001 * 109.46950 * 299.99596 * 5 4 2 34 34 H 1.09000 * 109.47480 * 60.00349 * 6 5 4 35 35 H 1.09001 * 109.47475 * 299.99929 * 6 5 4 36 36 H 1.08999 * 109.46908 * 60.00671 * 7 6 5 37 37 H 1.08994 * 109.47444 * 299.99781 * 7 6 5 38 38 H 1.09003 * 109.46985 * 300.00361 * 11 10 8 39 39 H 1.09006 * 109.47101 * 59.99562 * 11 10 8 40 40 H 0.96998 * 120.00160 * 179.97438 * 16 15 13 41 41 H 1.08999 * 117.49779 * 0.02562 * 21 12 11 42 42 H 1.09003 * 117.49863 * 145.02286 * 21 12 11 43 43 H 1.09007 * 117.49431 * 214.98102 * 22 12 11 44 44 H 1.09002 * 117.49715 * 359.96671 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0748 -1.5518 2.4374 7 6 5.5996 -1.6622 2.3758 8 6 6.1021 -2.3716 3.6069 9 8 5.3208 -2.7495 4.4475 10 8 7.4176 -2.5825 3.7700 11 6 7.8297 -3.2724 4.9794 12 6 9.3524 -3.4205 4.9884 13 6 10.1303 -2.1324 5.0704 14 1 10.4740 -1.6506 4.1670 15 6 10.4032 -1.5689 6.2988 16 7 9.8813 -2.0856 7.3899 17 14 11.5141 -0.0715 6.4135 18 1 10.9240 1.0437 5.6304 19 1 11.6482 0.3377 7.8348 20 1 12.8536 -0.4059 5.8667 21 6 9.9563 -4.5592 4.1639 22 6 9.9389 -4.6460 5.6921 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6053 -1.7199 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1674 1.1420 33 1 3.8531 -1.3941 0.3002 34 1 3.6403 -2.5504 2.4838 35 1 3.7866 -0.9885 3.3250 36 1 6.0346 -0.6638 2.3293 37 1 5.8876 -2.2257 1.4884 38 1 7.5149 -2.6978 5.8506 39 1 7.3688 -4.2597 5.0094 40 1 10.0736 -1.6894 8.2541 41 1 9.2688 -5.2025 3.6148 42 1 10.9165 -4.3767 3.6812 43 1 10.8875 -4.5206 6.2142 44 1 9.2398 -5.3464 6.1491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838809425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:57 Heat of formation + Delta-G solvation = -119.428207 kcal Electronic energy + Delta-G solvation = -20170.649425 eV Core-core repulsion = 17086.881382 eV Total energy + Delta-G solvation = -3083.768043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37340 -38.72538 -38.08029 -36.95669 -34.98569 -34.03322 -30.78082 -28.66091 -27.97205 -27.35554 -25.62968 -23.02879 -22.44307 -21.37746 -21.19605 -20.67064 -18.54539 -18.26722 -17.59210 -16.98531 -16.66886 -16.40746 -15.65627 -15.54687 -15.08924 -14.84899 -14.51809 -14.09032 -13.74792 -13.63426 -13.45646 -13.27396 -13.03055 -12.91986 -12.80012 -12.58845 -12.41885 -12.31468 -12.19691 -12.10213 -11.71847 -11.68982 -11.62336 -11.47397 -11.39539 -11.24653 -11.16514 -10.79243 -10.49638 -10.09151 -8.14939 -6.26697 1.28936 1.42264 1.43328 1.51115 1.88646 2.41724 3.13817 3.41325 3.76547 3.77860 3.97488 4.09476 4.12601 4.15073 4.25087 4.37663 4.44013 4.50086 4.55168 4.64781 4.67440 4.76729 4.83734 4.86590 4.88921 4.94027 4.95615 4.99127 5.08632 5.16490 5.16998 5.19722 5.32904 5.36747 5.42701 5.46027 5.57355 5.58890 5.60488 5.72904 5.76115 6.34550 6.78817 6.87146 7.42229 8.93861 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003227 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.108595 B = 8675.933346 C = 9324.997874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.103 4.103 7 C -0.105 4.105 8 C 0.444 3.556 9 O -0.556 6.556 10 O -0.350 6.350 11 C 0.128 3.872 12 C 0.003 3.997 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.021 3.979 16 N -0.911 5.911 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.176 4.176 22 C -0.148 4.148 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.261 0.739 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 3.472 -15.168 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.142 4.142 8 C 0.289 3.711 9 O -0.448 6.448 10 O -0.266 6.266 11 C 0.054 3.946 12 C 0.002 3.998 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.779 3.221 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.213 4.213 22 C -0.185 4.185 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.847 3.369 -14.695 20.470 hybrid contribution 0.509 0.526 1.028 1.262 sum -13.337 3.895 -13.667 19.489 Atomic orbital electron populations 1.21850 0.95150 1.01767 1.01806 1.21121 0.95808 0.96469 0.98083 1.21913 1.01443 0.95813 1.01644 1.21642 0.95166 1.00492 0.97994 1.21606 0.95698 1.01037 0.96639 1.21401 0.91742 1.01540 0.99393 1.21572 0.97537 1.02389 0.92693 1.24884 0.80425 0.76509 0.89241 1.90587 1.57661 1.50555 1.46003 1.86531 1.25901 1.70297 1.43861 1.22469 0.95845 0.93165 0.83101 1.18886 0.88634 0.90435 1.01799 1.20632 1.34428 1.06992 0.92363 0.92507 1.25765 0.96866 0.99827 0.95453 1.70110 1.44029 1.42319 0.98417 0.85672 0.79712 0.79743 0.76924 1.19607 1.21101 1.19248 1.23019 1.02401 1.02902 0.93012 1.22476 1.01559 1.00472 0.94016 0.93066 0.92197 0.92684 0.90793 0.92373 0.93186 0.92179 0.92128 0.92646 0.90765 0.90420 0.92079 0.92822 0.86298 0.85307 0.94510 0.93569 0.92990 0.89067 0.89486 0.91148 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.10 -1.28 2.92 -10.79 -0.03 -1.31 16 3 C -0.15 -1.95 8.95 71.98 0.64 -1.31 16 4 C -0.12 -1.80 4.68 30.59 0.14 -1.66 16 5 C -0.11 -1.80 4.97 30.59 0.15 -1.65 16 6 C -0.10 -2.31 4.50 30.60 0.14 -2.17 16 7 C -0.10 -2.59 5.81 29.85 0.17 -2.42 16 8 C 0.44 16.86 7.96 71.24 0.57 17.43 16 9 O -0.56 -24.41 15.73 21.97 0.35 -24.06 16 10 O -0.35 -15.49 10.16 -51.40 -0.52 -16.01 16 11 C 0.13 6.28 5.29 71.98 0.38 6.67 16 12 C 0.00 0.15 1.62 -52.93 -0.09 0.06 16 13 C -0.51 -27.96 8.78 25.60 0.22 -27.74 16 14 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 15 C 0.02 1.17 5.38 84.65 0.46 1.62 16 16 N -0.91 -52.74 12.88 21.45 0.28 -52.46 16 17 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.18 -7.47 9.96 30.62 0.30 -7.17 16 22 C -0.15 -6.91 9.37 30.62 0.29 -6.62 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.77 6.56 -2.39 -0.02 0.75 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.10 6.56 -2.39 -0.02 1.09 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.04 2.04 8.13 -2.39 -0.02 2.02 16 39 H 0.05 2.13 8.09 -2.38 -0.02 2.11 16 40 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.07 3.50 8.14 -2.38 -0.02 3.48 16 44 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -64.64 362.82 7.07 -57.57 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.93 Total: 17.01 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.01 Total: -27.46 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.28 Total: -52.46 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.18 Total: -40.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.64 7.07 -57.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838809425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.857 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds