Wall clock time and date at job start Mon Mar 30 2020 01:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 5 5 O 1.20825 * 119.99963 * 119.99623 * 4 2 1 6 6 O 1.34225 * 119.99990 * 300.00183 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47038 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47020 * 299.99688 * 8 7 6 10 10 C 1.52999 * 109.47376 * 59.99967 * 8 7 6 11 11 C 1.53003 * 109.47231 * 179.97438 * 8 7 6 12 12 C 1.50693 * 109.47307 * 179.97438 * 11 8 7 13 13 H 1.08008 * 120.00194 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00372 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99395 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00186 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47238 * 60.00015 * 16 14 12 18 18 H 1.48505 * 109.46953 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46789 * 299.99595 * 16 14 12 20 20 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 21 21 C 1.53781 * 113.61476 * 157.49826 * 20 2 1 22 22 C 1.53779 * 87.07812 * 220.01608 * 21 20 2 23 23 C 1.53776 * 113.61550 * 59.99962 * 20 2 1 24 24 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.09004 * 109.47173 * 299.99484 * 7 6 4 28 28 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 29 29 H 1.09004 * 109.46912 * 60.00628 * 9 8 7 30 30 H 1.09006 * 109.47125 * 179.97438 * 9 8 7 31 31 H 1.08993 * 109.47362 * 300.00068 * 9 8 7 32 32 H 1.08998 * 109.46981 * 59.99574 * 10 8 7 33 33 H 1.08996 * 109.47510 * 180.02562 * 10 8 7 34 34 H 1.08999 * 109.46848 * 300.00326 * 10 8 7 35 35 H 1.08998 * 109.46912 * 300.00294 * 11 8 7 36 36 H 1.09009 * 109.46743 * 59.99882 * 11 8 7 37 37 H 0.97002 * 119.99953 * 179.97438 * 15 14 12 38 38 H 1.08997 * 112.84405 * 288.80059 * 20 2 1 39 39 H 1.08993 * 113.61731 * 334.56827 * 21 20 2 40 40 H 1.08999 * 113.61144 * 105.46995 * 21 20 2 41 41 H 1.08997 * 113.61529 * 270.88346 * 22 21 20 42 42 H 1.09006 * 113.69033 * 139.99076 * 22 21 20 43 43 H 1.09003 * 113.61248 * 254.53555 * 23 20 2 44 44 H 1.09003 * 113.61486 * 25.42978 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4495 7 6 2.2269 -0.9862 3.5897 8 6 1.7559 -0.3189 4.8834 9 6 2.2677 1.1222 4.9294 10 6 0.2266 -0.3188 4.9298 11 6 2.3020 -1.0932 6.0847 12 6 1.8386 -0.4356 7.3590 13 1 1.2165 0.4463 7.3163 14 6 2.2089 -0.9595 8.5794 15 7 2.9669 -2.0330 8.6313 16 14 1.6339 -0.1447 10.1589 17 1 0.1497 -0.1447 10.2040 18 1 2.1641 -0.8962 11.3249 19 1 2.1307 1.2540 10.2035 20 6 2.0400 -0.7213 -1.2493 21 6 3.4727 -0.3277 -1.6461 22 6 2.9921 -0.3574 -3.1066 23 6 1.5811 -0.0724 -2.5657 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8626 -2.0131 3.5566 28 1 3.3163 -0.9859 3.5569 29 1 1.8782 1.6736 4.0736 30 1 1.9318 1.5978 5.8509 31 1 3.3571 1.1222 4.8964 32 1 -0.1380 -1.3454 4.8969 33 1 -0.1089 0.1570 5.8512 34 1 -0.1628 0.2326 4.0739 35 1 1.9371 -2.1197 6.0517 36 1 3.3916 -1.0937 6.0519 37 1 3.2278 -2.4015 9.4899 38 1 1.8759 -1.7982 -1.2128 39 1 3.7639 0.6647 -1.3023 40 1 4.2151 -1.0916 -1.4151 41 1 3.0896 -1.3351 -3.5785 42 1 3.3969 0.4497 -3.7173 43 1 0.7965 -0.6301 -3.0772 44 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838877385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:55 Heat of formation + Delta-G solvation = -102.977142 kcal Electronic energy + Delta-G solvation = -21078.836328 eV Core-core repulsion = 17995.781657 eV Total energy + Delta-G solvation = -3083.054671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56048 -38.91742 -37.04590 -35.30477 -33.18283 -32.29566 -27.34071 -26.58711 -26.39760 -26.25954 -25.43594 -23.82611 -22.61623 -20.29286 -19.55079 -18.23011 -17.28829 -16.46372 -16.14197 -16.01831 -15.31780 -14.97620 -14.53610 -13.96931 -13.58443 -13.20441 -13.11391 -12.78954 -12.72357 -12.50842 -12.24517 -12.10167 -12.04137 -11.76424 -11.41085 -11.23231 -10.94755 -10.85061 -10.74509 -10.58667 -10.54992 -10.40611 -10.32662 -10.23516 -10.23178 -10.03761 -9.71346 -9.18678 -8.94356 -8.36017 -6.00328 -4.01546 2.45563 2.97132 3.32929 3.37813 3.39756 4.33067 4.40011 4.44522 4.49126 4.65242 4.85098 5.00156 5.14409 5.25710 5.35212 5.49096 5.52054 5.52725 5.53695 5.54345 5.62379 5.68832 5.77861 5.84329 5.87836 5.99188 6.05584 6.11952 6.21432 6.30895 6.39962 6.52464 6.67123 6.72026 6.89004 7.11935 7.12895 7.15154 7.61435 7.73634 7.97831 8.05419 8.40410 9.02631 9.61415 11.11353 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.003430 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.304452 B = 8161.928012 C = 8401.061420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.105 0.895 4 C 0.458 3.542 5 O -0.512 6.512 6 O -0.350 6.350 7 C 0.079 3.921 8 C -0.059 4.059 9 C -0.125 4.125 10 C -0.125 4.125 11 C 0.035 3.965 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.095 4.095 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.133 4.133 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 5.456 -20.734 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.123 0.877 4 C 0.301 3.699 5 O -0.401 6.401 6 O -0.266 6.266 7 C 0.006 3.994 8 C -0.059 4.059 9 C -0.182 4.182 10 C -0.182 4.182 11 C -0.002 4.002 12 C -0.548 4.548 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.114 4.114 21 C -0.174 4.174 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.372 5.029 -20.586 21.458 hybrid contribution -0.049 0.129 1.090 1.098 sum -3.421 5.158 -19.496 20.455 Atomic orbital electron populations 1.21733 0.92090 1.02946 1.03249 1.21083 0.98143 1.00449 0.89674 0.87716 1.23635 0.77681 0.83069 0.85519 1.90635 1.35748 1.26109 1.87588 1.86486 1.69393 1.55867 1.14885 1.23468 0.98404 0.95032 0.82518 1.20805 0.96313 0.96557 0.92209 1.21707 0.99913 0.95647 1.00970 1.21704 0.94800 1.00745 1.00963 1.19118 0.96156 0.94872 0.90045 1.21121 1.31318 1.12073 0.90318 0.92134 1.25017 0.95276 0.95054 0.99163 1.69959 1.36344 1.21825 1.25404 0.86674 0.79025 0.79466 0.82943 1.20265 1.21384 1.20258 1.22477 0.96592 1.00554 0.91728 1.22951 0.96698 1.01908 0.95821 1.22796 0.96720 1.01880 0.96597 1.22950 0.97135 1.01027 0.95949 0.92164 0.90990 0.91223 0.91780 0.91786 0.94223 0.91611 0.93824 0.93824 0.91620 0.94221 0.96395 0.96399 0.92959 0.88290 0.90231 0.91067 0.90234 0.91482 0.91325 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.93 37.16 0.33 -0.99 16 2 C -0.07 -0.80 2.58 -91.77 -0.24 -1.04 16 3 H 0.10 0.99 7.94 -51.93 -0.41 0.58 16 4 C 0.46 7.01 7.25 36.00 0.26 7.27 16 5 O -0.51 -9.25 15.59 -18.75 -0.29 -9.55 16 6 O -0.35 -5.85 8.78 -39.24 -0.34 -6.19 16 7 C 0.08 1.49 4.32 37.16 0.16 1.65 16 8 C -0.06 -1.20 0.61 -154.51 -0.09 -1.29 16 9 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 10 C -0.12 -2.38 8.08 37.16 0.30 -2.08 16 11 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 12 C -0.51 -13.81 7.65 -34.44 -0.26 -14.08 16 13 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.10 -0.95 2.54 -89.81 -0.23 -1.17 16 21 C -0.14 -1.32 7.60 -25.92 -0.20 -1.52 16 22 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 23 C -0.13 -0.99 6.68 -25.92 -0.17 -1.17 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 26 H 0.07 0.49 7.45 -51.93 -0.39 0.10 16 27 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 28 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 30 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 34 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.12 7.86 -51.93 -0.41 0.72 16 39 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -30.19 349.96 -7.94 -38.12 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.03 Total: -2.50 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.26 Total: -15.58 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.64 Total: -15.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.19 -7.94 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838877385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.854 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds