Wall clock time and date at job start Mon Mar 30 2020 01:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 5 5 O 1.20825 * 119.99963 * 119.99623 * 4 2 1 6 6 O 1.34225 * 119.99990 * 300.00183 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47038 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47020 * 299.99688 * 8 7 6 10 10 C 1.52999 * 109.47376 * 59.99967 * 8 7 6 11 11 C 1.53003 * 109.47231 * 179.97438 * 8 7 6 12 12 C 1.50693 * 109.47307 * 179.97438 * 11 8 7 13 13 H 1.08008 * 120.00194 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00372 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99395 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00186 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47238 * 60.00015 * 16 14 12 18 18 H 1.48505 * 109.46953 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46789 * 299.99595 * 16 14 12 20 20 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 21 21 C 1.53781 * 113.61476 * 157.49826 * 20 2 1 22 22 C 1.53779 * 87.07812 * 220.01608 * 21 20 2 23 23 C 1.53776 * 113.61550 * 59.99962 * 20 2 1 24 24 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.09004 * 109.47173 * 299.99484 * 7 6 4 28 28 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 29 29 H 1.09004 * 109.46912 * 60.00628 * 9 8 7 30 30 H 1.09006 * 109.47125 * 179.97438 * 9 8 7 31 31 H 1.08993 * 109.47362 * 300.00068 * 9 8 7 32 32 H 1.08998 * 109.46981 * 59.99574 * 10 8 7 33 33 H 1.08996 * 109.47510 * 180.02562 * 10 8 7 34 34 H 1.08999 * 109.46848 * 300.00326 * 10 8 7 35 35 H 1.08998 * 109.46912 * 300.00294 * 11 8 7 36 36 H 1.09009 * 109.46743 * 59.99882 * 11 8 7 37 37 H 0.97002 * 119.99953 * 179.97438 * 15 14 12 38 38 H 1.08997 * 112.84405 * 288.80059 * 20 2 1 39 39 H 1.08993 * 113.61731 * 334.56827 * 21 20 2 40 40 H 1.08999 * 113.61144 * 105.46995 * 21 20 2 41 41 H 1.08997 * 113.61529 * 270.88346 * 22 21 20 42 42 H 1.09006 * 113.69033 * 139.99076 * 22 21 20 43 43 H 1.09003 * 113.61248 * 254.53555 * 23 20 2 44 44 H 1.09003 * 113.61486 * 25.42978 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4495 7 6 2.2269 -0.9862 3.5897 8 6 1.7559 -0.3189 4.8834 9 6 2.2677 1.1222 4.9294 10 6 0.2266 -0.3188 4.9298 11 6 2.3020 -1.0932 6.0847 12 6 1.8386 -0.4356 7.3590 13 1 1.2165 0.4463 7.3163 14 6 2.2089 -0.9595 8.5794 15 7 2.9669 -2.0330 8.6313 16 14 1.6339 -0.1447 10.1589 17 1 0.1497 -0.1447 10.2040 18 1 2.1641 -0.8962 11.3249 19 1 2.1307 1.2540 10.2035 20 6 2.0400 -0.7213 -1.2493 21 6 3.4727 -0.3277 -1.6461 22 6 2.9921 -0.3574 -3.1066 23 6 1.5811 -0.0724 -2.5657 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8626 -2.0131 3.5566 28 1 3.3163 -0.9859 3.5569 29 1 1.8782 1.6736 4.0736 30 1 1.9318 1.5978 5.8509 31 1 3.3571 1.1222 4.8964 32 1 -0.1380 -1.3454 4.8969 33 1 -0.1089 0.1570 5.8512 34 1 -0.1628 0.2326 4.0739 35 1 1.9371 -2.1197 6.0517 36 1 3.3916 -1.0937 6.0519 37 1 3.2278 -2.4015 9.4899 38 1 1.8759 -1.7982 -1.2128 39 1 3.7639 0.6647 -1.3023 40 1 4.2151 -1.0916 -1.4151 41 1 3.0896 -1.3351 -3.5785 42 1 3.3969 0.4497 -3.7173 43 1 0.7965 -0.6301 -3.0772 44 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838877385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:55 Heat of formation + Delta-G solvation = -117.427705 kcal Electronic energy + Delta-G solvation = -21079.462951 eV Core-core repulsion = 17995.781657 eV Total energy + Delta-G solvation = -3083.681295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76470 -39.84994 -38.55843 -36.83405 -34.46395 -33.95100 -29.32330 -28.04007 -27.96750 -27.09320 -26.12282 -25.35841 -24.11484 -21.38122 -20.31640 -19.90537 -18.56515 -18.31407 -17.57163 -17.29563 -16.52782 -16.11067 -15.82797 -15.35029 -15.17174 -14.73177 -14.33882 -14.05509 -13.84500 -13.74802 -13.48434 -13.35026 -13.02537 -12.94432 -12.77136 -12.65568 -12.50309 -12.32431 -12.26429 -12.16710 -11.99430 -11.83798 -11.50394 -11.40899 -11.35866 -11.20482 -11.04351 -10.96647 -10.86247 -10.52886 -8.16360 -6.24612 1.22264 1.42208 1.44848 1.52010 1.71660 2.43829 3.18044 3.49100 3.66767 3.70456 3.90249 3.91899 3.94064 4.00222 4.20988 4.29607 4.31631 4.39122 4.55652 4.58328 4.73256 4.82221 4.87418 4.90326 4.95277 5.00971 5.03438 5.07955 5.12143 5.12401 5.16262 5.31945 5.37355 5.41319 5.44270 5.47017 5.52557 5.55458 5.63535 5.73266 5.86156 6.26985 6.76624 6.89208 7.43163 8.96275 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.003430 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.304452 B = 8161.928012 C = 8401.061420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 H 0.127 0.873 4 C 0.453 3.547 5 O -0.546 6.546 6 O -0.345 6.345 7 C 0.089 3.911 8 C -0.055 4.055 9 C -0.118 4.118 10 C -0.118 4.118 11 C 0.041 3.959 12 C -0.516 4.516 13 H 0.073 0.927 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.118 4.118 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.068 0.932 35 H -0.012 1.012 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 7.936 -22.199 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 H 0.145 0.855 4 C 0.298 3.702 5 O -0.436 6.436 6 O -0.261 6.261 7 C 0.015 3.985 8 C -0.055 4.055 9 C -0.175 4.175 10 C -0.175 4.175 11 C 0.003 3.997 12 C -0.554 4.554 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.580 5.580 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.121 4.121 21 C -0.184 4.184 22 C -0.175 4.175 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.094 7.527 -22.072 23.870 hybrid contribution 0.531 -0.696 1.472 1.713 sum -4.563 6.831 -20.599 22.177 Atomic orbital electron populations 1.21764 0.90425 1.02887 1.04623 1.21291 0.99339 1.00824 0.87094 0.85500 1.24748 0.76757 0.82801 0.85887 1.90630 1.37338 1.27822 1.87799 1.86481 1.69305 1.55392 1.14928 1.23063 0.97614 0.94537 0.83270 1.20628 0.97333 0.96779 0.90804 1.21635 0.99567 0.94591 1.01747 1.21630 0.93363 1.00759 1.01747 1.18977 0.94257 0.94026 0.92395 1.21514 1.30795 1.12170 0.90936 0.90919 1.25962 0.95432 0.95631 1.03059 1.70114 1.38004 1.23633 1.26218 0.85554 0.78956 0.78653 0.78240 1.19066 1.21514 1.19056 1.22504 0.97183 0.99635 0.92776 1.23033 0.96066 1.01497 0.97763 1.22783 0.96879 1.02467 0.95331 1.22930 0.97111 1.01948 0.93526 0.92987 0.91250 0.88191 0.92963 0.92964 0.91358 0.92476 0.94472 0.94473 0.92494 0.91328 0.99399 0.99417 0.93041 0.90393 0.89509 0.93454 0.90339 0.90030 0.90220 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.93 71.98 0.64 -1.52 16 2 C -0.07 -1.29 2.58 -11.54 -0.03 -1.32 16 3 H 0.13 1.96 7.94 -2.39 -0.02 1.94 16 4 C 0.45 13.59 7.25 71.24 0.52 14.10 16 5 O -0.55 -20.17 15.59 21.97 0.34 -19.83 16 6 O -0.35 -11.16 8.78 -51.37 -0.45 -11.61 16 7 C 0.09 3.43 4.32 71.98 0.31 3.74 16 8 C -0.06 -2.27 0.61 -52.18 -0.03 -2.30 16 9 C -0.12 -4.39 8.08 71.98 0.58 -3.81 16 10 C -0.12 -4.37 8.08 71.98 0.58 -3.79 16 11 C 0.04 2.13 4.04 29.85 0.12 2.25 16 12 C -0.52 -28.25 7.65 25.60 0.20 -28.05 16 13 H 0.07 3.73 5.68 -2.91 -0.02 3.72 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 15 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 16 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.10 -1.88 2.54 -10.27 -0.03 -1.91 16 21 C -0.15 -2.69 7.60 31.12 0.24 -2.45 16 22 C -0.14 -1.81 8.08 31.12 0.25 -1.56 16 23 C -0.12 -1.37 6.68 31.12 0.21 -1.16 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 26 H 0.10 0.97 7.45 -2.39 -0.02 0.95 16 27 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16 28 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16 29 H 0.07 2.14 7.68 -2.38 -0.02 2.12 16 30 H 0.06 2.21 6.62 -2.38 -0.02 2.19 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 34 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.08 1.76 7.86 -2.39 -0.02 1.75 16 39 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 Total: -1.00 -66.90 349.96 7.16 -59.74 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.94 Total: 10.53 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 4.02 Total: -27.53 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.20 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.11 Total: -31.44 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.90 7.16 -59.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838877385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.689 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds