Wall clock time and date at job start Mon Mar 30 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46558 * 2 1 4 4 C 1.52998 * 109.47537 * 120.00030 * 2 1 3 5 5 C 1.52996 * 109.47356 * 175.00150 * 4 2 1 6 6 C 1.52998 * 109.47356 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47356 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47694 * 175.76389 * 7 6 5 9 9 O 1.20827 * 119.99532 * 5.67442 * 8 7 6 10 10 O 1.34227 * 120.00591 * 185.67292 * 8 7 6 11 11 C 1.45199 * 116.99946 * 174.88200 * 10 8 7 12 12 C 1.50698 * 112.84720 * 65.01548 * 11 10 8 13 13 H 1.08008 * 119.99884 * 244.59759 * 12 11 10 14 14 C 1.37874 * 120.00214 * 64.60353 * 12 11 10 15 15 N 1.31521 * 120.00010 * 186.60499 * 14 12 11 16 16 Si 1.86799 * 119.99880 * 6.60248 * 14 12 11 17 17 H 1.48499 * 109.47203 * 93.05186 * 16 14 12 18 18 H 1.48509 * 109.47120 * 213.04680 * 16 14 12 19 19 H 1.48497 * 109.47405 * 333.04579 * 16 14 12 20 20 C 1.53774 * 113.61465 * 293.81659 * 11 10 8 21 21 C 1.53952 * 87.02202 * 220.04767 * 20 11 10 22 22 C 1.53784 * 113.61245 * 196.20874 * 11 10 8 23 23 H 1.09000 * 109.46738 * 299.99708 * 1 2 3 24 24 H 1.08995 * 109.47210 * 60.00076 * 1 2 3 25 25 H 1.09004 * 109.46336 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46929 * 240.00810 * 2 1 3 27 27 H 1.09000 * 109.47358 * 60.00672 * 3 2 1 28 28 H 1.09006 * 109.46802 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47693 * 299.99726 * 3 2 1 30 30 H 1.09004 * 109.46655 * 55.00231 * 4 2 1 31 31 H 1.08995 * 109.47067 * 295.00317 * 4 2 1 32 32 H 1.08998 * 109.47187 * 59.99665 * 5 4 2 33 33 H 1.09005 * 109.47323 * 300.00048 * 5 4 2 34 34 H 1.09004 * 109.46655 * 60.00081 * 6 5 4 35 35 H 1.08995 * 109.47067 * 300.00167 * 6 5 4 36 36 H 1.09007 * 109.47067 * 295.76959 * 7 6 5 37 37 H 1.08999 * 109.47300 * 55.76000 * 7 6 5 38 38 H 0.97004 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.09002 * 113.61681 * 334.56920 * 20 11 10 40 40 H 1.08998 * 113.61587 * 105.47463 * 20 11 10 41 41 H 1.08998 * 113.53836 * 270.81401 * 21 20 11 42 42 H 1.08997 * 113.74459 * 139.94194 * 21 20 11 43 43 H 1.08994 * 113.61256 * 254.52850 * 22 11 10 44 44 H 1.08998 * 113.61001 * 25.34956 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 6 4.0750 -1.5528 2.4368 7 6 5.5998 -1.6619 2.3758 8 6 6.1108 -2.2790 3.6521 9 8 5.3313 -2.6924 4.4776 10 8 7.4319 -2.3693 3.8721 11 6 7.8515 -2.8692 5.1691 12 6 7.4538 -4.3044 5.3997 13 1 6.7501 -4.5509 6.1810 14 6 7.9884 -5.3028 4.6133 15 7 7.5463 -6.5363 4.7260 16 14 9.3405 -4.9034 3.3878 17 1 10.6647 -5.1249 4.0222 18 1 9.2074 -5.7841 2.1995 19 1 9.2241 -3.4839 2.9674 20 6 7.4903 -1.9348 6.3357 21 6 8.8692 -2.2750 6.9298 22 6 9.3265 -2.5790 5.4933 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -1.7198 1.2950 31 1 1.7518 -0.1584 2.1369 32 1 3.9995 0.1676 1.1419 33 1 3.8533 -1.3939 0.3001 34 1 3.6403 -2.5514 2.4822 35 1 3.7866 -0.9903 3.3247 36 1 5.8858 -2.2872 1.5299 37 1 6.0307 -0.6681 2.2548 38 1 7.9222 -7.2387 4.1725 39 1 7.3869 -0.8900 6.0424 40 1 6.6545 -2.2911 6.9379 41 1 8.8594 -3.1502 7.5793 42 1 9.3768 -1.4209 7.3780 43 1 9.9709 -3.4547 5.4164 44 1 9.7264 -1.7116 4.9681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838877905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:34 Heat of formation + Delta-G solvation = -98.170734 kcal Electronic energy + Delta-G solvation = -21034.076631 eV Core-core repulsion = 17951.230381 eV Total energy + Delta-G solvation = -3082.846250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56924 -37.68941 -37.05898 -34.48764 -33.75101 -32.31655 -29.50699 -27.35355 -26.64870 -24.95270 -24.85889 -22.77776 -21.24850 -20.18405 -19.55707 -18.54780 -17.08296 -15.97858 -15.68701 -15.37994 -15.32200 -14.86751 -14.36757 -14.20187 -13.77257 -13.61596 -12.96968 -12.76477 -12.57573 -12.38873 -12.29887 -11.83491 -11.73779 -11.53307 -11.38936 -11.17926 -11.01359 -10.94541 -10.73590 -10.68937 -10.67105 -10.41828 -10.33795 -10.13395 -9.96366 -9.78317 -9.36345 -8.97638 -8.72706 -8.51342 -6.18014 -4.23650 3.26422 3.31500 3.43386 3.51473 3.84633 4.40257 4.63692 4.74407 4.78668 5.10988 5.12637 5.19678 5.30861 5.42840 5.48326 5.52066 5.52507 5.56000 5.62734 5.69129 5.73546 5.76535 5.80441 5.85325 5.93797 5.97489 6.02823 6.08151 6.19278 6.26806 6.28624 6.37464 6.40779 6.44003 6.55514 6.65259 6.85244 6.95088 7.27034 7.56142 7.88422 8.44070 8.89233 9.07100 9.44057 10.92619 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.004085 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.314090 B = 6853.367561 C = 7231.211621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.119 4.119 8 C 0.454 3.546 9 O -0.495 6.495 10 O -0.371 6.371 11 C 0.200 3.800 12 C -0.503 4.503 13 H 0.084 0.916 14 C 0.083 3.917 15 N -0.881 5.881 16 Si 0.864 3.136 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.235 1.235 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.133 4.133 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.266 0.734 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 13.985 -8.272 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.157 4.157 8 C 0.295 3.705 9 O -0.381 6.381 10 O -0.289 6.289 11 C 0.166 3.834 12 C -0.540 4.540 13 H 0.102 0.898 14 C -0.122 4.122 15 N -0.518 5.518 16 Si 0.691 3.309 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.158 1.158 20 C -0.184 4.184 21 C -0.162 4.162 22 C -0.171 4.171 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.586 13.658 -8.043 17.164 hybrid contribution 0.709 -0.152 -0.652 0.975 sum -5.877 13.506 -8.695 17.104 Atomic orbital electron populations 1.21849 0.95518 1.01665 1.01489 1.21139 0.95471 0.96393 0.98694 1.21900 1.01352 0.96010 1.01390 1.21650 0.95584 1.00579 0.97477 1.21661 0.95389 1.00582 0.98109 1.21388 0.93084 1.01930 0.98023 1.21410 0.96796 1.02041 0.95451 1.23051 0.82133 0.77034 0.88289 1.90602 1.57398 1.43325 1.46817 1.86544 1.24213 1.76576 1.41614 1.21605 0.91073 0.94024 0.76666 1.20792 1.27286 0.86603 1.19324 0.89832 1.25009 0.96353 0.94750 0.96093 1.69943 1.41157 1.00989 1.39692 0.87067 0.82065 0.80752 0.81021 1.20527 1.21884 1.15841 1.23352 0.97589 0.98203 0.99243 1.22511 0.96887 1.00750 0.96020 1.23275 0.97057 1.00505 0.96260 0.92759 0.93000 0.92726 0.91354 0.92778 0.92307 0.93140 0.91840 0.91913 0.91819 0.92010 0.90998 0.91320 0.88879 0.89186 0.92416 0.91945 0.91219 0.89583 0.92463 0.91399 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.10 -0.86 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 4 C -0.12 -1.16 4.68 -26.73 -0.13 -1.29 16 5 C -0.12 -1.31 4.97 -26.73 -0.13 -1.44 16 6 C -0.11 -1.52 4.51 -26.73 -0.12 -1.64 16 7 C -0.12 -1.90 5.81 -27.89 -0.16 -2.06 16 8 C 0.45 10.01 7.51 36.00 0.27 10.28 16 9 O -0.49 -12.46 14.45 -18.75 -0.27 -12.73 16 10 O -0.37 -8.80 8.15 -39.25 -0.32 -9.12 16 11 C 0.20 4.87 0.24 -90.96 -0.02 4.85 16 12 C -0.50 -14.46 7.63 -34.44 -0.26 -14.72 16 13 H 0.08 2.67 8.05 -52.48 -0.42 2.25 16 14 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 15 N -0.88 -27.13 13.96 55.43 0.77 -26.36 16 16 Si 0.86 21.62 24.59 -169.99 -4.18 17.44 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.24 -5.65 5.61 56.52 0.32 -5.33 16 20 C -0.15 -3.12 6.65 -25.83 -0.17 -3.29 16 21 C -0.12 -2.39 7.81 -25.83 -0.20 -2.59 16 22 C -0.13 -2.84 6.04 -25.91 -0.16 -3.00 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.64 6.57 -51.93 -0.34 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 35 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 36 H 0.09 1.40 8.14 -51.92 -0.42 0.97 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.51 5.67 -51.93 -0.29 1.21 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -32.14 344.92 -7.79 -39.93 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.22 Total: 1.07 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.77 Total: -15.43 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.59 Total: -21.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.18 Total: 17.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.14 -7.79 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838877905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.242 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds