Wall clock time and date at job start Mon Mar 30 2020 00:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46558 * 2 1 4 4 C 1.52998 * 109.47537 * 120.00030 * 2 1 3 5 5 C 1.52996 * 109.47356 * 175.00150 * 4 2 1 6 6 C 1.52998 * 109.47356 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47356 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47694 * 175.76389 * 7 6 5 9 9 O 1.20827 * 119.99532 * 5.67442 * 8 7 6 10 10 O 1.34227 * 120.00591 * 185.67292 * 8 7 6 11 11 C 1.45199 * 116.99946 * 174.88200 * 10 8 7 12 12 C 1.50698 * 112.84720 * 65.01548 * 11 10 8 13 13 H 1.08008 * 119.99884 * 244.59759 * 12 11 10 14 14 C 1.37874 * 120.00214 * 64.60353 * 12 11 10 15 15 N 1.31521 * 120.00010 * 186.60499 * 14 12 11 16 16 Si 1.86799 * 119.99880 * 6.60248 * 14 12 11 17 17 H 1.48499 * 109.47203 * 93.05186 * 16 14 12 18 18 H 1.48509 * 109.47120 * 213.04680 * 16 14 12 19 19 H 1.48497 * 109.47405 * 333.04579 * 16 14 12 20 20 C 1.53774 * 113.61465 * 293.81659 * 11 10 8 21 21 C 1.53952 * 87.02202 * 220.04767 * 20 11 10 22 22 C 1.53784 * 113.61245 * 196.20874 * 11 10 8 23 23 H 1.09000 * 109.46738 * 299.99708 * 1 2 3 24 24 H 1.08995 * 109.47210 * 60.00076 * 1 2 3 25 25 H 1.09004 * 109.46336 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46929 * 240.00810 * 2 1 3 27 27 H 1.09000 * 109.47358 * 60.00672 * 3 2 1 28 28 H 1.09006 * 109.46802 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47693 * 299.99726 * 3 2 1 30 30 H 1.09004 * 109.46655 * 55.00231 * 4 2 1 31 31 H 1.08995 * 109.47067 * 295.00317 * 4 2 1 32 32 H 1.08998 * 109.47187 * 59.99665 * 5 4 2 33 33 H 1.09005 * 109.47323 * 300.00048 * 5 4 2 34 34 H 1.09004 * 109.46655 * 60.00081 * 6 5 4 35 35 H 1.08995 * 109.47067 * 300.00167 * 6 5 4 36 36 H 1.09007 * 109.47067 * 295.76959 * 7 6 5 37 37 H 1.08999 * 109.47300 * 55.76000 * 7 6 5 38 38 H 0.97004 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.09002 * 113.61681 * 334.56920 * 20 11 10 40 40 H 1.08998 * 113.61587 * 105.47463 * 20 11 10 41 41 H 1.08998 * 113.53836 * 270.81401 * 21 20 11 42 42 H 1.08997 * 113.74459 * 139.94194 * 21 20 11 43 43 H 1.08994 * 113.61256 * 254.52850 * 22 11 10 44 44 H 1.08998 * 113.61001 * 25.34956 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 6 4.0750 -1.5528 2.4368 7 6 5.5998 -1.6619 2.3758 8 6 6.1108 -2.2790 3.6521 9 8 5.3313 -2.6924 4.4776 10 8 7.4319 -2.3693 3.8721 11 6 7.8515 -2.8692 5.1691 12 6 7.4538 -4.3044 5.3997 13 1 6.7501 -4.5509 6.1810 14 6 7.9884 -5.3028 4.6133 15 7 7.5463 -6.5363 4.7260 16 14 9.3405 -4.9034 3.3878 17 1 10.6647 -5.1249 4.0222 18 1 9.2074 -5.7841 2.1995 19 1 9.2241 -3.4839 2.9674 20 6 7.4903 -1.9348 6.3357 21 6 8.8692 -2.2750 6.9298 22 6 9.3265 -2.5790 5.4933 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -1.7198 1.2950 31 1 1.7518 -0.1584 2.1369 32 1 3.9995 0.1676 1.1419 33 1 3.8533 -1.3939 0.3001 34 1 3.6403 -2.5514 2.4822 35 1 3.7866 -0.9903 3.3247 36 1 5.8858 -2.2872 1.5299 37 1 6.0307 -0.6681 2.2548 38 1 7.9222 -7.2387 4.1725 39 1 7.3869 -0.8900 6.0424 40 1 6.6545 -2.2911 6.9379 41 1 8.8594 -3.1502 7.5793 42 1 9.3768 -1.4209 7.3780 43 1 9.9709 -3.4547 5.4164 44 1 9.7264 -1.7116 4.9681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838877905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:33 Heat of formation + Delta-G solvation = -116.059618 kcal Electronic energy + Delta-G solvation = -21034.852351 eV Core-core repulsion = 17951.230381 eV Total energy + Delta-G solvation = -3083.621970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36027 -39.24583 -38.05423 -36.24305 -34.90662 -34.53134 -30.59307 -28.66083 -27.97029 -26.66077 -26.13438 -24.43187 -22.39418 -21.31271 -20.66663 -20.48739 -18.97122 -17.43222 -17.39941 -17.21120 -16.82392 -16.16480 -15.62664 -15.35646 -15.07432 -14.88192 -14.80734 -14.26206 -13.66548 -13.57577 -13.38929 -13.16813 -13.02819 -12.88766 -12.84105 -12.59223 -12.39522 -12.30444 -12.16899 -11.97265 -11.79853 -11.68952 -11.66005 -11.44439 -11.35621 -11.24593 -11.16918 -10.99700 -10.59807 -10.52602 -8.41509 -6.52836 1.29686 1.32337 1.54952 1.67135 2.19868 2.31794 2.98218 3.75033 3.81356 3.85437 3.95998 3.98517 4.08882 4.13673 4.16146 4.23757 4.41269 4.52664 4.58785 4.67464 4.76460 4.80498 4.83306 4.85071 4.87731 4.92567 4.98468 5.03539 5.08627 5.12930 5.16105 5.20092 5.22216 5.33310 5.36055 5.42882 5.54803 5.58365 5.59759 5.64162 5.91618 6.36515 6.56898 7.16359 7.28879 8.74010 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.004085 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.314090 B = 6853.367561 C = 7231.211621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.102 4.102 7 C -0.109 4.109 8 C 0.441 3.559 9 O -0.538 6.538 10 O -0.372 6.372 11 C 0.179 3.821 12 C -0.508 4.508 13 H 0.024 0.976 14 C 0.025 3.975 15 N -0.936 5.936 16 Si 0.930 3.070 17 H -0.261 1.261 18 H -0.294 1.294 19 H -0.213 1.213 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.127 4.127 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.269 0.731 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 17.074 -10.337 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.140 4.140 7 C -0.147 4.147 8 C 0.285 3.715 9 O -0.428 6.428 10 O -0.290 6.290 11 C 0.144 3.856 12 C -0.545 4.545 13 H 0.042 0.958 14 C -0.175 4.175 15 N -0.575 5.575 16 Si 0.752 3.248 17 H -0.186 1.186 18 H -0.221 1.221 19 H -0.135 1.135 20 C -0.181 4.181 21 C -0.147 4.147 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.886 16.771 -10.102 20.179 hybrid contribution 0.028 -1.127 0.071 1.130 sum -4.858 15.644 -10.031 19.208 Atomic orbital electron populations 1.21853 0.95149 1.01626 1.01946 1.21119 0.95828 0.96735 0.97797 1.21898 1.01494 0.95410 1.01789 1.21642 0.95195 1.00239 0.98258 1.21598 0.95713 1.01072 0.96326 1.21358 0.92206 1.00861 0.99549 1.21569 0.97430 1.03591 0.92094 1.24357 0.81323 0.76074 0.89766 1.90598 1.58083 1.45267 1.48841 1.86514 1.25228 1.76311 1.40927 1.21658 0.93939 0.91977 0.77981 1.20852 1.25906 0.89900 1.17889 0.95751 1.25951 0.98929 0.94272 0.98350 1.70096 1.43349 1.02416 1.41622 0.86050 0.79134 0.81491 0.78092 1.18645 1.22139 1.13515 1.23343 0.98020 0.98817 0.97893 1.22460 0.95256 1.01839 0.95174 1.23305 0.94292 1.01455 0.97391 0.92868 0.91992 0.93063 0.91077 0.92934 0.92043 0.92251 0.92888 0.92329 0.89998 0.91086 0.93591 0.92417 0.87292 0.85454 0.92241 0.89300 0.94144 0.91281 0.87754 0.92378 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.19 71.98 0.66 -1.50 16 2 C -0.10 -1.49 2.92 -10.79 -0.03 -1.52 16 3 C -0.15 -2.03 8.95 71.98 0.64 -1.39 16 4 C -0.12 -2.19 4.68 30.59 0.14 -2.05 16 5 C -0.11 -2.14 4.97 30.59 0.15 -1.99 16 6 C -0.10 -2.82 4.51 30.59 0.14 -2.68 16 7 C -0.11 -3.23 5.81 29.85 0.17 -3.06 16 8 C 0.44 19.21 7.51 71.23 0.53 19.74 16 9 O -0.54 -28.09 14.45 21.96 0.32 -27.77 16 10 O -0.37 -16.95 8.15 -51.39 -0.42 -17.37 16 11 C 0.18 8.59 0.24 -11.02 0.00 8.59 16 12 C -0.51 -30.41 7.63 25.60 0.20 -30.21 16 13 H 0.02 1.68 8.05 -2.91 -0.02 1.66 16 14 C 0.02 1.47 5.47 84.65 0.46 1.93 16 15 N -0.94 -60.23 13.96 21.45 0.30 -59.93 16 16 Si 0.93 44.31 24.59 68.60 1.69 46.00 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.21 -9.31 5.61 99.48 0.56 -8.76 16 20 C -0.14 -5.99 6.65 31.18 0.21 -5.78 16 21 C -0.11 -3.97 7.81 31.18 0.24 -3.73 16 22 C -0.13 -5.02 6.04 31.12 0.19 -4.83 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.80 6.57 -2.38 -0.02 0.79 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.34 6.57 -2.39 -0.02 1.32 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.06 1.71 8.06 -2.39 -0.02 1.69 16 36 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 37 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.04 1.88 8.09 -2.39 -0.02 1.87 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.06 2.41 5.67 -2.39 -0.01 2.40 16 44 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -74.43 344.92 6.38 -68.06 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.78 Total: 19.49 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.71 Total: -28.48 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.10 Total: -45.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.69 Total: 46.00 kcal Total: -74.43 6.38 -68.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838877905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.004 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds