Wall clock time and date at job start Mon Mar 30 2020 00:39:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53002 * 109.46558 * 2 1
4 4 C 1.52998 * 109.47537 * 120.00030 * 2 1 3
5 5 C 1.52996 * 109.47356 * 175.00150 * 4 2 1
6 6 C 1.52998 * 109.47356 * 180.02562 * 5 4 2
7 7 C 1.52996 * 109.47356 * 180.02562 * 6 5 4
8 8 C 1.50697 * 109.47694 * 175.76389 * 7 6 5
9 9 O 1.20827 * 119.99532 * 5.67442 * 8 7 6
10 10 O 1.34227 * 120.00591 * 185.67292 * 8 7 6
11 11 C 1.45199 * 116.99946 * 174.88200 * 10 8 7
12 12 C 1.50698 * 112.84720 * 65.01548 * 11 10 8
13 13 H 1.08008 * 119.99884 * 244.59759 * 12 11 10
14 14 C 1.37874 * 120.00214 * 64.60353 * 12 11 10
15 15 N 1.31521 * 120.00010 * 186.60499 * 14 12 11
16 16 Si 1.86799 * 119.99880 * 6.60248 * 14 12 11
17 17 H 1.48499 * 109.47203 * 93.05186 * 16 14 12
18 18 H 1.48509 * 109.47120 * 213.04680 * 16 14 12
19 19 H 1.48497 * 109.47405 * 333.04579 * 16 14 12
20 20 C 1.53774 * 113.61465 * 293.81659 * 11 10 8
21 21 C 1.53952 * 87.02202 * 220.04767 * 20 11 10
22 22 C 1.53784 * 113.61245 * 196.20874 * 11 10 8
23 23 H 1.09000 * 109.46738 * 299.99708 * 1 2 3
24 24 H 1.08995 * 109.47210 * 60.00076 * 1 2 3
25 25 H 1.09004 * 109.46336 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.46929 * 240.00810 * 2 1 3
27 27 H 1.09000 * 109.47358 * 60.00672 * 3 2 1
28 28 H 1.09006 * 109.46802 * 180.02562 * 3 2 1
29 29 H 1.09001 * 109.47693 * 299.99726 * 3 2 1
30 30 H 1.09004 * 109.46655 * 55.00231 * 4 2 1
31 31 H 1.08995 * 109.47067 * 295.00317 * 4 2 1
32 32 H 1.08998 * 109.47187 * 59.99665 * 5 4 2
33 33 H 1.09005 * 109.47323 * 300.00048 * 5 4 2
34 34 H 1.09004 * 109.46655 * 60.00081 * 6 5 4
35 35 H 1.08995 * 109.47067 * 300.00167 * 6 5 4
36 36 H 1.09007 * 109.47067 * 295.76959 * 7 6 5
37 37 H 1.08999 * 109.47300 * 55.76000 * 7 6 5
38 38 H 0.97004 * 119.99752 * 179.97438 * 15 14 12
39 39 H 1.09002 * 113.61681 * 334.56920 * 20 11 10
40 40 H 1.08998 * 113.61587 * 105.47463 * 20 11 10
41 41 H 1.08998 * 113.53836 * 270.81401 * 21 20 11
42 42 H 1.08997 * 113.74459 * 139.94194 * 21 20 11
43 43 H 1.08994 * 113.61256 * 254.52850 * 22 11 10
44 44 H 1.08998 * 113.61001 * 25.34956 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0401 -0.7212 1.2492
5 6 3.5649 -0.8310 1.1879
6 6 4.0750 -1.5528 2.4368
7 6 5.5998 -1.6619 2.3758
8 6 6.1108 -2.2790 3.6521
9 8 5.3313 -2.6924 4.4776
10 8 7.4319 -2.3693 3.8721
11 6 7.8515 -2.8692 5.1691
12 6 7.4538 -4.3044 5.3997
13 1 6.7501 -4.5509 6.1810
14 6 7.9884 -5.3028 4.6133
15 7 7.5463 -6.5363 4.7260
16 14 9.3405 -4.9034 3.3878
17 1 10.6647 -5.1249 4.0222
18 1 9.2074 -5.7841 2.1995
19 1 9.2241 -3.4839 2.9674
20 6 7.4903 -1.9348 6.3357
21 6 8.8692 -2.2750 6.9298
22 6 9.3265 -2.5790 5.4933
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3632 -1.0278 -0.0005
26 1 1.8933 -0.5137 -0.8901
27 1 1.6766 1.9564 0.8900
28 1 3.1300 1.4426 -0.0005
29 1 1.6766 1.9564 -0.8900
30 1 1.6055 -1.7198 1.2950
31 1 1.7518 -0.1584 2.1369
32 1 3.9995 0.1676 1.1419
33 1 3.8533 -1.3939 0.3001
34 1 3.6403 -2.5514 2.4822
35 1 3.7866 -0.9903 3.3247
36 1 5.8858 -2.2872 1.5299
37 1 6.0307 -0.6681 2.2548
38 1 7.9222 -7.2387 4.1725
39 1 7.3869 -0.8900 6.0424
40 1 6.6545 -2.2911 6.9379
41 1 8.8594 -3.1502 7.5793
42 1 9.3768 -1.4209 7.3780
43 1 9.9709 -3.4547 5.4164
44 1 9.7264 -1.7116 4.9681
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000838877905.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:33
Heat of formation + Delta-G solvation = -116.059618 kcal
Electronic energy + Delta-G solvation = -21034.852351 eV
Core-core repulsion = 17951.230381 eV
Total energy + Delta-G solvation = -3083.621970 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.36027 -39.24583 -38.05423 -36.24305 -34.90662 -34.53134 -30.59307 -28.66083
-27.97029 -26.66077 -26.13438 -24.43187 -22.39418 -21.31271 -20.66663 -20.48739
-18.97122 -17.43222 -17.39941 -17.21120 -16.82392 -16.16480 -15.62664 -15.35646
-15.07432 -14.88192 -14.80734 -14.26206 -13.66548 -13.57577 -13.38929 -13.16813
-13.02819 -12.88766 -12.84105 -12.59223 -12.39522 -12.30444 -12.16899 -11.97265
-11.79853 -11.68952 -11.66005 -11.44439 -11.35621 -11.24593 -11.16918 -10.99700
-10.59807 -10.52602 -8.41509 -6.52836 1.29686 1.32337 1.54952 1.67135
2.19868 2.31794 2.98218 3.75033 3.81356 3.85437 3.95998 3.98517
4.08882 4.13673 4.16146 4.23757 4.41269 4.52664 4.58785 4.67464
4.76460 4.80498 4.83306 4.85071 4.87731 4.92567 4.98468 5.03539
5.08627 5.12930 5.16105 5.20092 5.22216 5.33310 5.36055 5.42882
5.54803 5.58365 5.59759 5.64162 5.91618 6.36515 6.56898 7.16359
7.28879 8.74010
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.025534 B = 0.004085 C = 0.003871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1096.314090 B = 6853.367561 C = 7231.211621
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.096 4.096
3 C -0.149 4.149
4 C -0.116 4.116
5 C -0.110 4.110
6 C -0.102 4.102
7 C -0.109 4.109
8 C 0.441 3.559
9 O -0.538 6.538
10 O -0.372 6.372
11 C 0.179 3.821
12 C -0.508 4.508
13 H 0.024 0.976
14 C 0.025 3.975
15 N -0.936 5.936
16 Si 0.930 3.070
17 H -0.261 1.261
18 H -0.294 1.294
19 H -0.213 1.213
20 C -0.143 4.143
21 C -0.110 4.110
22 C -0.127 4.127
23 H 0.052 0.948
24 H 0.061 0.939
25 H 0.050 0.950
26 H 0.071 0.929
27 H 0.052 0.948
28 H 0.061 0.939
29 H 0.058 0.942
30 H 0.052 0.948
31 H 0.058 0.942
32 H 0.081 0.919
33 H 0.070 0.930
34 H 0.045 0.955
35 H 0.057 0.943
36 H 0.109 0.891
37 H 0.127 0.873
38 H 0.269 0.731
39 H 0.089 0.911
40 H 0.040 0.960
41 H 0.068 0.932
42 H 0.104 0.896
43 H 0.058 0.942
44 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.692 17.074 -10.337 20.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.115 4.115
3 C -0.206 4.206
4 C -0.153 4.153
5 C -0.147 4.147
6 C -0.140 4.140
7 C -0.147 4.147
8 C 0.285 3.715
9 O -0.428 6.428
10 O -0.290 6.290
11 C 0.144 3.856
12 C -0.545 4.545
13 H 0.042 0.958
14 C -0.175 4.175
15 N -0.575 5.575
16 Si 0.752 3.248
17 H -0.186 1.186
18 H -0.221 1.221
19 H -0.135 1.135
20 C -0.181 4.181
21 C -0.147 4.147
22 C -0.164 4.164
23 H 0.071 0.929
24 H 0.080 0.920
25 H 0.069 0.931
26 H 0.089 0.911
27 H 0.071 0.929
28 H 0.080 0.920
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.100 0.900
33 H 0.089 0.911
34 H 0.064 0.936
35 H 0.076 0.924
36 H 0.127 0.873
37 H 0.145 0.855
38 H 0.078 0.922
39 H 0.107 0.893
40 H 0.059 0.941
41 H 0.087 0.913
42 H 0.122 0.878
43 H 0.076 0.924
44 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -4.886 16.771 -10.102 20.179
hybrid contribution 0.028 -1.127 0.071 1.130
sum -4.858 15.644 -10.031 19.208
Atomic orbital electron populations
1.21853 0.95149 1.01626 1.01946 1.21119 0.95828 0.96735 0.97797
1.21898 1.01494 0.95410 1.01789 1.21642 0.95195 1.00239 0.98258
1.21598 0.95713 1.01072 0.96326 1.21358 0.92206 1.00861 0.99549
1.21569 0.97430 1.03591 0.92094 1.24357 0.81323 0.76074 0.89766
1.90598 1.58083 1.45267 1.48841 1.86514 1.25228 1.76311 1.40927
1.21658 0.93939 0.91977 0.77981 1.20852 1.25906 0.89900 1.17889
0.95751 1.25951 0.98929 0.94272 0.98350 1.70096 1.43349 1.02416
1.41622 0.86050 0.79134 0.81491 0.78092 1.18645 1.22139 1.13515
1.23343 0.98020 0.98817 0.97893 1.22460 0.95256 1.01839 0.95174
1.23305 0.94292 1.01455 0.97391 0.92868 0.91992 0.93063 0.91077
0.92934 0.92043 0.92251 0.92888 0.92329 0.89998 0.91086 0.93591
0.92417 0.87292 0.85454 0.92241 0.89300 0.94144 0.91281 0.87754
0.92378 0.87840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.16 9.19 71.98 0.66 -1.50 16
2 C -0.10 -1.49 2.92 -10.79 -0.03 -1.52 16
3 C -0.15 -2.03 8.95 71.98 0.64 -1.39 16
4 C -0.12 -2.19 4.68 30.59 0.14 -2.05 16
5 C -0.11 -2.14 4.97 30.59 0.15 -1.99 16
6 C -0.10 -2.82 4.51 30.59 0.14 -2.68 16
7 C -0.11 -3.23 5.81 29.85 0.17 -3.06 16
8 C 0.44 19.21 7.51 71.23 0.53 19.74 16
9 O -0.54 -28.09 14.45 21.96 0.32 -27.77 16
10 O -0.37 -16.95 8.15 -51.39 -0.42 -17.37 16
11 C 0.18 8.59 0.24 -11.02 0.00 8.59 16
12 C -0.51 -30.41 7.63 25.60 0.20 -30.21 16
13 H 0.02 1.68 8.05 -2.91 -0.02 1.66 16
14 C 0.02 1.47 5.47 84.65 0.46 1.93 16
15 N -0.94 -60.23 13.96 21.45 0.30 -59.93 16
16 Si 0.93 44.31 24.59 68.60 1.69 46.00 16
17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
18 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16
19 H -0.21 -9.31 5.61 99.48 0.56 -8.76 16
20 C -0.14 -5.99 6.65 31.18 0.21 -5.78 16
21 C -0.11 -3.97 7.81 31.18 0.24 -3.73 16
22 C -0.13 -5.02 6.04 31.12 0.19 -4.83 16
23 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16
24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16
26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.06 0.80 6.57 -2.38 -0.02 0.79 16
29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
32 H 0.08 1.34 6.57 -2.39 -0.02 1.32 16
33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
34 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16
35 H 0.06 1.71 8.06 -2.39 -0.02 1.69 16
36 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16
37 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16
38 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16
39 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16
40 H 0.04 1.88 8.09 -2.39 -0.02 1.87 16
41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16
42 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16
43 H 0.06 2.41 5.67 -2.39 -0.01 2.40 16
44 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16
Total: -1.00 -74.43 344.92 6.38 -68.06
By element:
Atomic # 1 Polarization: 18.71 SS G_CDS: 0.78 Total: 19.49 kcal
Atomic # 6 Polarization: -32.19 SS G_CDS: 3.71 Total: -28.48 kcal
Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal
Atomic # 8 Polarization: -45.04 SS G_CDS: -0.10 Total: -45.14 kcal
Atomic # 14 Polarization: 44.31 SS G_CDS: 1.69 Total: 46.00 kcal
Total: -74.43 6.38 -68.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000838877905.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.004 kcal
(2) G-P(sol) polarization free energy of solvation -74.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds