Wall clock time and date at job start Mon Mar 30 2020 01:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 O 1.45202 * 109.47427 * 64.99690 * 3 2 1 14 14 C 1.34233 * 116.99797 * 270.00418 * 13 3 2 15 15 O 1.20820 * 120.00322 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99716 * 179.97438 * 14 13 3 17 17 H 1.09002 * 115.55098 * 34.32623 * 16 14 13 18 18 C 1.53002 * 117.49811 * 248.62310 * 16 14 13 19 19 C 1.52999 * 117.50054 * 180.02562 * 16 14 13 20 20 H 1.08998 * 117.49932 * 359.97438 * 19 16 14 21 21 C 1.53005 * 117.50199 * 214.98004 * 19 16 14 22 22 C 1.52999 * 109.47165 * 174.99668 * 21 19 16 23 23 C 1.52999 * 109.47164 * 60.00253 * 22 21 19 24 24 C 1.53001 * 109.46543 * 179.97438 * 22 21 19 25 25 C 1.53001 * 109.47252 * 299.99773 * 22 21 19 26 26 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 27 27 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 28 28 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 30 30 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.08998 * 117.50049 * 359.97438 * 18 16 14 33 33 H 1.09006 * 117.49877 * 145.02597 * 18 16 14 34 34 H 1.09000 * 109.46657 * 294.99753 * 21 19 16 35 35 H 1.09005 * 109.47131 * 54.99467 * 21 19 16 36 36 H 1.09000 * 109.47470 * 59.99418 * 23 22 21 37 37 H 1.09003 * 109.46969 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.46749 * 299.99805 * 23 22 21 39 39 H 1.09000 * 109.47042 * 60.00440 * 24 22 21 40 40 H 1.09003 * 109.46734 * 179.97438 * 24 22 21 41 41 H 1.08997 * 109.47705 * 299.99566 * 24 22 21 42 42 H 1.09004 * 109.47012 * 59.99980 * 25 22 21 43 43 H 1.08998 * 109.46987 * 179.97438 * 25 22 21 44 44 H 1.08998 * 109.46839 * 300.00554 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.4416 2.1141 -2.0849 11 1 6.6135 0.8417 -0.0278 12 1 6.4396 -0.3098 -2.1548 13 8 1.6558 2.0918 1.2407 14 6 0.4726 2.7255 1.2558 15 8 -0.2189 2.7377 0.2652 16 6 0.0068 3.4217 2.5085 17 1 0.7912 3.8798 3.1111 18 6 -1.1918 2.8217 3.2461 19 6 -1.3509 4.1255 2.4624 20 1 -1.9071 4.0852 1.5259 21 6 -1.5041 5.4186 3.2657 22 6 -2.8801 6.0291 2.9921 23 6 -3.9694 5.0384 3.4079 24 6 -3.0334 7.3218 3.7959 25 6 -3.0136 6.3372 1.4994 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0613 -2.9497 32 1 -1.6438 1.9236 2.8251 33 1 -1.1962 2.8849 4.3344 34 1 -1.4089 5.1991 4.3291 35 1 -0.7280 6.1244 2.9696 36 1 -3.8742 4.8188 4.4713 37 1 -4.9497 5.4735 3.2133 38 1 -3.8602 4.1171 2.8355 39 1 -2.2573 8.0278 3.5001 40 1 -4.0135 7.7570 3.6006 41 1 -2.9384 7.1020 4.8593 42 1 -2.9045 5.4159 0.9270 43 1 -3.9941 6.7716 1.3044 44 1 -2.2375 7.0429 1.2033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842771227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:11 Heat of formation + Delta-G solvation = -97.785825 kcal Electronic energy + Delta-G solvation = -21174.720530 eV Core-core repulsion = 18091.890971 eV Total energy + Delta-G solvation = -3082.829559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93442 -38.45733 -36.24962 -35.06178 -33.45269 -31.33692 -27.99419 -27.41065 -27.35169 -27.18282 -24.46429 -22.95296 -21.27688 -20.17994 -19.22340 -18.80004 -17.12802 -16.57652 -15.74228 -15.17898 -14.82701 -14.73149 -14.57721 -14.32075 -13.44834 -13.37505 -12.95847 -12.81791 -12.45341 -12.23934 -12.03724 -11.82542 -11.79316 -11.59498 -11.43551 -11.23970 -11.17848 -10.99905 -10.93560 -10.84818 -10.64666 -10.51597 -10.27401 -10.10612 -9.92087 -9.76550 -9.49480 -9.32549 -8.77555 -8.43720 -6.16946 -4.23820 2.88436 3.25385 3.30735 3.34665 3.60600 4.00162 4.33589 4.58715 4.67126 4.73736 4.96142 5.01075 5.14215 5.19320 5.33128 5.45588 5.49431 5.53540 5.65143 5.68035 5.73333 5.78397 5.80491 5.87948 5.94786 5.99528 6.13063 6.16506 6.24349 6.24688 6.27748 6.31395 6.46289 6.48052 6.89475 6.98918 7.18831 7.29870 7.63948 7.76302 7.98604 8.18691 8.69163 8.94568 9.41459 10.89853 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.003849 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.375854 B = 7272.799909 C = 7577.793079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.284 1.284 13 O -0.353 6.353 14 C 0.481 3.519 15 O -0.518 6.518 16 C -0.163 4.163 17 H 0.127 0.873 18 C -0.149 4.149 19 C -0.120 4.120 20 H 0.122 0.878 21 C -0.080 4.080 22 C -0.067 4.067 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.147 4.147 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.108 0.892 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 8.863 11.258 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.209 1.209 13 O -0.269 6.269 14 C 0.324 3.676 15 O -0.409 6.409 16 C -0.182 4.182 17 H 0.145 0.855 18 C -0.186 4.186 19 C -0.138 4.138 20 H 0.140 0.860 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.198 4.198 24 C -0.198 4.198 25 C -0.204 4.204 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.986 8.731 10.757 18.320 hybrid contribution 1.023 -0.159 -0.284 1.074 sum -10.963 8.573 10.473 17.417 Atomic orbital electron populations 1.21853 0.98430 0.98917 1.00702 1.22011 0.92608 0.99404 1.03321 1.20666 0.94977 0.88767 0.78743 0.93578 1.21056 0.89753 1.38865 1.06225 0.91365 1.24888 0.99234 0.94768 0.95082 1.69895 1.35360 1.37896 1.09462 0.86285 0.83917 0.77676 0.78339 1.20414 1.19592 1.20949 1.86462 1.34201 1.62262 1.43953 1.22215 0.80710 0.76468 0.88167 1.90584 1.55825 1.58843 1.35636 1.21865 0.93400 1.05220 0.97761 0.85485 1.23102 0.98769 0.97781 0.98921 1.22564 0.96715 0.92806 1.01714 0.86021 1.21287 0.96611 0.94778 0.99001 1.20506 0.95071 0.95231 0.95868 1.21884 0.97555 0.99209 1.01178 1.21871 1.01554 0.96751 0.99650 1.21966 1.01305 1.02090 0.95014 0.94987 0.92858 0.94859 0.87358 0.94002 0.92420 0.88375 0.87851 0.91546 0.91242 0.92858 0.93098 0.92051 0.92692 0.92770 0.92782 0.91825 0.92969 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.84 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.99 2.25 -27.89 -0.06 5.92 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.81 8.90 -34.44 -0.31 -15.11 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.31 11.29 55.43 0.63 -24.69 16 9 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 O -0.35 -8.63 9.81 -39.27 -0.39 -9.01 16 14 C 0.48 10.24 6.20 36.00 0.22 10.46 16 15 O -0.52 -12.11 13.40 -18.74 -0.25 -12.36 16 16 C -0.16 -2.55 6.02 -91.77 -0.55 -3.10 16 17 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 18 C -0.15 -1.87 9.88 -26.75 -0.26 -2.14 16 19 C -0.12 -1.54 3.76 -90.64 -0.34 -1.88 16 20 H 0.12 1.76 5.58 -51.93 -0.29 1.47 16 21 C -0.08 -0.81 4.55 -26.73 -0.12 -0.93 16 22 C -0.07 -0.61 0.80 -154.51 -0.12 -0.74 16 23 C -0.14 -1.24 8.23 37.16 0.31 -0.93 16 24 C -0.14 -1.11 8.47 37.16 0.31 -0.80 16 25 C -0.15 -1.47 8.23 37.16 0.31 -1.16 16 26 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 27 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 34 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.59 7.20 -51.93 -0.37 0.22 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -29.97 347.62 -8.17 -38.14 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.83 Total: 1.67 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.55 Total: -15.18 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.63 Total: -24.69 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.64 Total: -21.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.97 -8.17 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.649 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds