Wall clock time and date at job start Mon Mar 30 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 O 1.45202 * 109.47427 * 64.99690 * 3 2 1 14 14 C 1.34233 * 116.99797 * 270.00418 * 13 3 2 15 15 O 1.20820 * 120.00322 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99716 * 179.97438 * 14 13 3 17 17 H 1.09002 * 115.55098 * 34.32623 * 16 14 13 18 18 C 1.53002 * 117.49811 * 248.62310 * 16 14 13 19 19 C 1.52999 * 117.50054 * 180.02562 * 16 14 13 20 20 H 1.08998 * 117.49932 * 359.97438 * 19 16 14 21 21 C 1.53005 * 117.50199 * 214.98004 * 19 16 14 22 22 C 1.52999 * 109.47165 * 174.99668 * 21 19 16 23 23 C 1.52999 * 109.47164 * 60.00253 * 22 21 19 24 24 C 1.53001 * 109.46543 * 179.97438 * 22 21 19 25 25 C 1.53001 * 109.47252 * 299.99773 * 22 21 19 26 26 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 27 27 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 28 28 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 30 30 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.08998 * 117.50049 * 359.97438 * 18 16 14 33 33 H 1.09006 * 117.49877 * 145.02597 * 18 16 14 34 34 H 1.09000 * 109.46657 * 294.99753 * 21 19 16 35 35 H 1.09005 * 109.47131 * 54.99467 * 21 19 16 36 36 H 1.09000 * 109.47470 * 59.99418 * 23 22 21 37 37 H 1.09003 * 109.46969 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.46749 * 299.99805 * 23 22 21 39 39 H 1.09000 * 109.47042 * 60.00440 * 24 22 21 40 40 H 1.09003 * 109.46734 * 179.97438 * 24 22 21 41 41 H 1.08997 * 109.47705 * 299.99566 * 24 22 21 42 42 H 1.09004 * 109.47012 * 59.99980 * 25 22 21 43 43 H 1.08998 * 109.46987 * 179.97438 * 25 22 21 44 44 H 1.08998 * 109.46839 * 300.00554 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.4416 2.1141 -2.0849 11 1 6.6135 0.8417 -0.0278 12 1 6.4396 -0.3098 -2.1548 13 8 1.6558 2.0918 1.2407 14 6 0.4726 2.7255 1.2558 15 8 -0.2189 2.7377 0.2652 16 6 0.0068 3.4217 2.5085 17 1 0.7912 3.8798 3.1111 18 6 -1.1918 2.8217 3.2461 19 6 -1.3509 4.1255 2.4624 20 1 -1.9071 4.0852 1.5259 21 6 -1.5041 5.4186 3.2657 22 6 -2.8801 6.0291 2.9921 23 6 -3.9694 5.0384 3.4079 24 6 -3.0334 7.3218 3.7959 25 6 -3.0136 6.3372 1.4994 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0613 -2.9497 32 1 -1.6438 1.9236 2.8251 33 1 -1.1962 2.8849 4.3344 34 1 -1.4089 5.1991 4.3291 35 1 -0.7280 6.1244 2.9696 36 1 -3.8742 4.8188 4.4713 37 1 -4.9497 5.4735 3.2133 38 1 -3.8602 4.1171 2.8355 39 1 -2.2573 8.0278 3.5001 40 1 -4.0135 7.7570 3.6006 41 1 -2.9384 7.1020 4.8593 42 1 -2.9045 5.4159 0.9270 43 1 -3.9941 6.7716 1.3044 44 1 -2.2375 7.0429 1.2033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:10 Heat of formation + Delta-G solvation = -112.110838 kcal Electronic energy + Delta-G solvation = -21175.341709 eV Core-core repulsion = 18091.890971 eV Total energy + Delta-G solvation = -3083.450738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56033 -39.58059 -37.75013 -36.41832 -35.50458 -33.37462 -29.53479 -28.63231 -28.12254 -28.03154 -26.04724 -24.82901 -22.47224 -21.87198 -20.89126 -19.66268 -18.85476 -18.49114 -17.43465 -17.00001 -16.50725 -15.71778 -15.53246 -15.38637 -14.89334 -14.79295 -14.36042 -14.12125 -13.84540 -13.46218 -13.36630 -13.17935 -13.09169 -13.06565 -12.81237 -12.59852 -12.55905 -12.54092 -12.35808 -12.14875 -11.93715 -11.76971 -11.62117 -11.49053 -11.31970 -11.25321 -11.03760 -10.88319 -10.82637 -10.54706 -8.29257 -6.46551 1.27866 1.40263 1.42253 1.53969 2.00633 2.40365 2.81445 3.00038 3.62210 3.71184 3.84973 4.02514 4.06475 4.16233 4.26392 4.33666 4.36234 4.44322 4.53345 4.71468 4.73376 4.78400 4.82203 4.87186 4.91292 4.99797 5.00737 5.01767 5.07432 5.15014 5.18569 5.18902 5.29715 5.34280 5.37519 5.47896 5.49734 5.57430 5.60315 5.64763 5.96643 6.13130 6.58807 7.02592 7.26162 8.77607 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.003849 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.375854 B = 7272.799909 C = 7577.793079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.004 0.996 5 C -0.553 4.553 6 H 0.064 0.936 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.274 1.274 13 O -0.364 6.364 14 C 0.472 3.528 15 O -0.547 6.547 16 C -0.185 4.185 17 H 0.146 0.854 18 C -0.127 4.127 19 C -0.106 4.106 20 H 0.101 0.899 21 C -0.075 4.075 22 C -0.065 4.065 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.148 4.148 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.271 0.729 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 9.361 13.441 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.198 1.198 11 H -0.187 1.187 12 H -0.199 1.199 13 O -0.281 6.281 14 C 0.318 3.682 15 O -0.439 6.439 16 C -0.204 4.204 17 H 0.164 0.836 18 C -0.163 4.163 19 C -0.124 4.124 20 H 0.119 0.881 21 C -0.113 4.113 22 C -0.065 4.065 23 C -0.197 4.197 24 C -0.195 4.195 25 C -0.206 4.206 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.149 9.237 12.953 20.017 hybrid contribution 0.980 -0.279 -1.000 1.428 sum -11.169 8.958 11.952 18.650 Atomic orbital electron populations 1.21698 0.96249 1.00591 0.99995 1.21856 0.94515 0.98036 1.02310 1.20366 0.94562 0.89337 0.78628 0.97834 1.21344 0.90561 1.40099 1.06998 0.91744 1.25829 1.04402 0.93771 0.94285 1.70018 1.37502 1.37869 1.09834 0.85192 0.77497 0.78074 0.78715 1.19758 1.18712 1.19864 1.86454 1.36204 1.62970 1.42434 1.23362 0.79289 0.75662 0.89889 1.90565 1.56206 1.59827 1.37303 1.21982 0.95226 1.07107 0.96077 0.83632 1.23295 0.95216 0.97103 1.00736 1.22617 0.93740 0.94592 1.01469 0.88147 1.21330 0.97155 0.93092 0.99679 1.20507 0.94676 0.96147 0.95200 1.21875 0.97682 0.98441 1.01718 1.21836 1.01916 0.95755 0.99981 1.21983 1.01729 1.00990 0.95849 0.94464 0.94738 0.91861 0.89525 0.93597 0.91992 0.89330 0.84079 0.89296 0.91456 0.91549 0.92492 0.93389 0.92767 0.92184 0.91633 0.93861 0.91997 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.57 71.98 0.62 -5.17 16 2 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 3 C 0.22 12.67 2.25 29.85 0.07 12.74 16 4 H 0.00 0.25 7.16 -2.38 -0.02 0.23 16 5 C -0.55 -32.27 8.90 25.60 0.23 -32.05 16 6 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -53.25 11.29 21.45 0.24 -53.00 16 9 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 O -0.36 -18.36 9.81 -51.44 -0.50 -18.86 16 14 C 0.47 20.63 6.20 71.23 0.44 21.07 16 15 O -0.55 -26.73 13.40 21.98 0.29 -26.44 16 16 C -0.19 -5.61 6.02 -11.54 -0.07 -5.68 16 17 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 18 C -0.13 -2.90 9.88 30.58 0.30 -2.60 16 19 C -0.11 -2.60 3.76 -10.81 -0.04 -2.64 16 20 H 0.10 2.95 5.58 -2.39 -0.01 2.94 16 21 C -0.08 -1.35 4.55 30.60 0.14 -1.21 16 22 C -0.07 -1.06 0.80 -52.18 -0.04 -1.11 16 23 C -0.14 -2.13 8.23 71.98 0.59 -1.54 16 24 C -0.14 -1.79 8.47 71.98 0.61 -1.18 16 25 C -0.15 -2.89 8.23 71.98 0.59 -2.30 16 26 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 27 H 0.03 1.65 7.80 -2.39 -0.02 1.63 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.09 4.88 5.95 -2.39 -0.01 4.87 16 30 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.14 2.21 8.03 -2.38 -0.02 2.19 16 34 H 0.09 1.24 7.87 -2.39 -0.02 1.22 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.85 7.20 -2.39 -0.02 0.84 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.04 1.01 6.14 -2.39 -0.01 0.99 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.26 347.62 7.06 -60.21 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.95 Total: 19.33 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.05 Total: -26.81 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.21 Total: -45.30 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.26 7.06 -60.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.905 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds