Wall clock time and date at job start Mon Mar 30 2020 01:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.54979 * 34.41464 * 16 14 13 18 18 C 1.52998 * 117.49601 * 248.74684 * 16 14 13 19 19 C 1.52992 * 117.49529 * 180.08808 * 16 14 13 20 20 H 1.08998 * 117.50182 * 359.97438 * 19 16 14 21 21 C 1.53010 * 117.49666 * 214.97846 * 19 16 14 22 22 C 1.52998 * 109.47101 * 174.99984 * 21 19 16 23 23 C 1.53005 * 109.47363 * 59.99778 * 22 21 19 24 24 C 1.52997 * 109.46950 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47262 * 299.99926 * 22 21 19 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 32 32 H 1.09002 * 117.50024 * 359.97438 * 18 16 14 33 33 H 1.08995 * 117.49921 * 145.02263 * 18 16 14 34 34 H 1.08998 * 109.46578 * 294.99791 * 21 19 16 35 35 H 1.08995 * 109.46821 * 55.00057 * 21 19 16 36 36 H 1.09007 * 109.46739 * 59.99826 * 23 22 21 37 37 H 1.08994 * 109.47133 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.47127 * 300.00139 * 23 22 21 39 39 H 1.08994 * 109.47306 * 60.00059 * 24 22 21 40 40 H 1.09002 * 109.47128 * 180.02562 * 24 22 21 41 41 H 1.08998 * 109.47488 * 299.99710 * 24 22 21 42 42 H 1.09001 * 109.47057 * 59.99965 * 25 22 21 43 43 H 1.09002 * 109.47047 * 180.02562 * 25 22 21 44 44 H 1.09001 * 109.46677 * 300.00127 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 1 0.2941 2.9450 -3.4459 18 6 -0.0586 4.9501 -2.4846 19 6 -1.3494 4.1277 -2.4617 20 1 -1.9052 4.0883 -1.5249 21 6 -2.1990 4.1110 -3.7342 22 6 -3.5575 4.7543 -3.4488 23 6 -3.3515 6.2000 -2.9921 24 6 -4.4067 4.7382 -4.7214 25 6 -4.2727 3.9687 -2.3478 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 5.8770 0.4816 2.1128 32 1 0.2347 5.4520 -1.5625 33 1 0.1849 5.4788 -3.4061 34 1 -1.6895 4.6708 -4.5185 35 1 -2.3458 3.0812 -4.0595 36 1 -2.8420 6.7597 -3.7765 37 1 -4.3194 6.6583 -2.7892 38 1 -2.7463 6.2119 -2.0856 39 1 -4.5536 3.7085 -5.0472 40 1 -5.3745 5.1968 -4.5183 41 1 -3.8971 5.2981 -5.5055 42 1 -3.6675 3.9805 -1.4413 43 1 -5.2407 4.4267 -2.1449 44 1 -4.4194 2.9388 -2.6733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842771228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:14 Heat of formation + Delta-G solvation = -88.119235 kcal Electronic energy + Delta-G solvation = -21269.620423 eV Core-core repulsion = 18187.210039 eV Total energy + Delta-G solvation = -3082.410384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11923 -38.59276 -36.44279 -35.21628 -33.55357 -31.90775 -28.15641 -27.68435 -27.44252 -27.37799 -24.58482 -22.69691 -21.45353 -20.57899 -19.44788 -18.87181 -17.43289 -16.52356 -16.15138 -15.63128 -14.88407 -14.75861 -14.68132 -14.34622 -13.51429 -13.45771 -13.33978 -12.88661 -12.57965 -12.41733 -12.21433 -11.99099 -11.89988 -11.85824 -11.65711 -11.59994 -11.41163 -11.23372 -11.08231 -10.90848 -10.75157 -10.57531 -10.19349 -10.04942 -9.98578 -9.83635 -9.59608 -9.45360 -9.06360 -8.65139 -6.22770 -4.24888 2.71283 3.18288 3.30501 3.33238 3.40399 3.90495 4.26405 4.50391 4.60541 4.67770 4.88741 4.93144 5.06696 5.09155 5.26611 5.39534 5.43745 5.47996 5.50666 5.63245 5.66944 5.71066 5.73417 5.76160 5.82886 5.88885 5.92003 5.94190 5.98944 6.07351 6.10979 6.18120 6.22440 6.38642 6.46186 6.56783 6.68757 6.74750 7.08171 7.38765 7.55451 8.25848 8.64956 8.85619 9.34533 10.89318 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.004088 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.014587 B = 6847.557537 C = 7168.103509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.197 3.803 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.261 1.261 13 O -0.337 6.337 14 C 0.482 3.518 15 O -0.519 6.519 16 C -0.164 4.164 17 H 0.129 0.871 18 C -0.146 4.146 19 C -0.120 4.120 20 H 0.122 0.878 21 C -0.079 4.079 22 C -0.067 4.067 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.269 0.731 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 7.088 -10.226 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.143 3.857 4 H 0.063 0.937 5 C -0.563 4.563 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.253 6.253 14 C 0.325 3.675 15 O -0.410 6.410 16 C -0.183 4.183 17 H 0.147 0.853 18 C -0.183 4.183 19 C -0.138 4.138 20 H 0.140 0.860 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.199 4.199 24 C -0.198 4.198 25 C -0.204 4.204 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.676 7.009 -9.795 21.389 hybrid contribution -0.280 -0.671 0.871 1.135 sum -17.956 6.338 -8.924 21.030 Atomic orbital electron populations 1.21894 0.96964 0.99949 1.01821 1.22355 0.94382 0.99629 1.02171 1.20965 0.96280 0.88079 0.80389 0.93664 1.20809 0.87784 1.39822 1.07846 0.89518 1.24735 0.94950 0.95283 0.97379 1.69836 1.08489 1.44394 1.29806 0.86993 0.81007 0.80135 0.81264 1.19915 1.21675 1.18535 1.86493 1.34199 1.62250 1.42310 1.22347 0.80364 0.76415 0.88341 1.90583 1.55738 1.58914 1.35751 1.21842 1.03158 0.96140 0.97149 0.85314 1.23144 1.00548 0.90575 1.04075 1.22608 0.88687 1.01492 1.01044 0.86006 1.21287 0.94153 1.01070 0.95167 1.20505 0.94722 0.95811 0.95627 1.21889 1.01341 0.95034 1.01619 1.21870 0.99444 1.01688 0.96844 1.21966 0.99956 0.99767 0.98665 0.93488 0.92597 0.93985 0.91837 0.91252 0.92072 0.88175 0.87657 0.91446 0.91271 0.92790 0.93074 0.92045 0.92704 0.92748 0.92735 0.91873 0.92942 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.57 37.16 0.32 -2.67 16 2 C -0.15 -3.41 5.15 -26.74 -0.14 -3.55 16 3 C 0.20 5.01 1.84 -27.89 -0.05 4.96 16 4 H 0.05 1.22 6.21 -51.93 -0.32 0.90 16 5 C -0.52 -15.22 9.48 -34.44 -0.33 -15.55 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.88 21.82 24.41 -169.99 -4.15 17.67 16 10 H -0.27 -6.50 6.83 56.52 0.39 -6.11 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 13 O -0.34 -7.86 9.81 -39.26 -0.39 -8.24 16 14 C 0.48 9.63 6.20 36.01 0.22 9.86 16 15 O -0.52 -11.28 13.40 -18.74 -0.25 -11.54 16 16 C -0.16 -2.40 6.02 -91.77 -0.55 -2.95 16 17 H 0.13 1.68 8.14 -51.93 -0.42 1.25 16 18 C -0.15 -1.77 9.88 -26.70 -0.26 -2.04 16 19 C -0.12 -1.44 3.77 -90.58 -0.34 -1.78 16 20 H 0.12 1.64 5.58 -51.93 -0.29 1.35 16 21 C -0.08 -0.75 4.55 -26.73 -0.12 -0.87 16 22 C -0.07 -0.57 0.80 -154.51 -0.12 -0.69 16 23 C -0.14 -1.17 8.23 37.16 0.31 -0.87 16 24 C -0.14 -1.04 8.47 37.16 0.31 -0.72 16 25 C -0.15 -1.35 8.23 37.16 0.31 -1.04 16 26 H 0.05 0.92 6.06 -51.93 -0.31 0.60 16 27 H 0.05 1.16 7.80 -51.93 -0.40 0.76 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.51 3.22 -51.93 -0.17 1.34 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.11 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.66 6.14 -51.93 -0.32 0.34 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -31.04 340.87 -7.12 -38.16 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.70 Total: 0.64 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.55 Total: -15.70 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.64 Total: -19.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.15 Total: 17.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -7.12 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.957 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds