Wall clock time and date at job start Mon Mar 30 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.54979 * 34.41464 * 16 14 13 18 18 C 1.52998 * 117.49601 * 248.74684 * 16 14 13 19 19 C 1.52992 * 117.49529 * 180.08808 * 16 14 13 20 20 H 1.08998 * 117.50182 * 359.97438 * 19 16 14 21 21 C 1.53010 * 117.49666 * 214.97846 * 19 16 14 22 22 C 1.52998 * 109.47101 * 174.99984 * 21 19 16 23 23 C 1.53005 * 109.47363 * 59.99778 * 22 21 19 24 24 C 1.52997 * 109.46950 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47262 * 299.99926 * 22 21 19 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 32 32 H 1.09002 * 117.50024 * 359.97438 * 18 16 14 33 33 H 1.08995 * 117.49921 * 145.02263 * 18 16 14 34 34 H 1.08998 * 109.46578 * 294.99791 * 21 19 16 35 35 H 1.08995 * 109.46821 * 55.00057 * 21 19 16 36 36 H 1.09007 * 109.46739 * 59.99826 * 23 22 21 37 37 H 1.08994 * 109.47133 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.47127 * 300.00139 * 23 22 21 39 39 H 1.08994 * 109.47306 * 60.00059 * 24 22 21 40 40 H 1.09002 * 109.47128 * 180.02562 * 24 22 21 41 41 H 1.08998 * 109.47488 * 299.99710 * 24 22 21 42 42 H 1.09001 * 109.47057 * 59.99965 * 25 22 21 43 43 H 1.09002 * 109.47047 * 180.02562 * 25 22 21 44 44 H 1.09001 * 109.46677 * 300.00127 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 1 0.2941 2.9450 -3.4459 18 6 -0.0586 4.9501 -2.4846 19 6 -1.3494 4.1277 -2.4617 20 1 -1.9052 4.0883 -1.5249 21 6 -2.1990 4.1110 -3.7342 22 6 -3.5575 4.7543 -3.4488 23 6 -3.3515 6.2000 -2.9921 24 6 -4.4067 4.7382 -4.7214 25 6 -4.2727 3.9687 -2.3478 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 5.8770 0.4816 2.1128 32 1 0.2347 5.4520 -1.5625 33 1 0.1849 5.4788 -3.4061 34 1 -1.6895 4.6708 -4.5185 35 1 -2.3458 3.0812 -4.0595 36 1 -2.8420 6.7597 -3.7765 37 1 -4.3194 6.6583 -2.7892 38 1 -2.7463 6.2119 -2.0856 39 1 -4.5536 3.7085 -5.0472 40 1 -5.3745 5.1968 -4.5183 41 1 -3.8971 5.2981 -5.5055 42 1 -3.6675 3.9805 -1.4413 43 1 -5.2407 4.4267 -2.1449 44 1 -4.4194 2.9388 -2.6733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:13 Heat of formation + Delta-G solvation = -104.817064 kcal Electronic energy + Delta-G solvation = -21270.344496 eV Core-core repulsion = 18187.210039 eV Total energy + Delta-G solvation = -3083.134456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67146 -39.63603 -37.87067 -36.44131 -35.53311 -33.94362 -29.92335 -28.71297 -28.10988 -28.03414 -26.04565 -24.56476 -22.73592 -22.00843 -20.99840 -19.69793 -19.15865 -18.44425 -17.80620 -17.18664 -16.57547 -15.67647 -15.49859 -15.39094 -15.30996 -14.85636 -14.36502 -14.24293 -13.99852 -13.88879 -13.59238 -13.23881 -13.16198 -13.09947 -13.08284 -12.61293 -12.57254 -12.54430 -12.36138 -12.07179 -11.91253 -11.62954 -11.60818 -11.54280 -11.32159 -11.26779 -11.17257 -11.04752 -10.87450 -10.76183 -8.47568 -6.56290 1.19194 1.21205 1.28044 1.38041 1.89020 2.16843 2.78857 2.84862 3.59910 3.66521 3.80193 3.98380 4.06132 4.06491 4.09180 4.14626 4.23116 4.30501 4.44571 4.54784 4.72052 4.73537 4.79597 4.86549 4.89247 4.91108 4.93344 5.00258 5.00699 5.01322 5.03423 5.15383 5.19213 5.29532 5.30110 5.32695 5.35438 5.48411 5.57623 5.60532 5.67591 6.14341 6.47456 6.92159 7.09849 8.68518 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.004088 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.014587 B = 6847.557537 C = 7168.103509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 C 0.201 3.799 4 H 0.028 0.972 5 C -0.542 4.542 6 H 0.045 0.955 7 C 0.031 3.969 8 N -0.929 5.929 9 Si 0.939 3.061 10 H -0.249 1.249 11 H -0.282 1.282 12 H -0.258 1.258 13 O -0.354 6.354 14 C 0.475 3.525 15 O -0.541 6.541 16 C -0.183 4.183 17 H 0.148 0.852 18 C -0.135 4.135 19 C -0.101 4.101 20 H 0.105 0.895 21 C -0.076 4.076 22 C -0.065 4.065 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.148 4.148 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.276 0.724 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.994 6.970 -11.183 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.146 3.854 4 H 0.045 0.955 5 C -0.580 4.580 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.567 5.567 9 Si 0.763 3.237 10 H -0.174 1.174 11 H -0.208 1.208 12 H -0.182 1.182 13 O -0.270 6.270 14 C 0.321 3.679 15 O -0.432 6.432 16 C -0.202 4.202 17 H 0.166 0.834 18 C -0.172 4.172 19 C -0.119 4.119 20 H 0.123 0.877 21 C -0.113 4.113 22 C -0.065 4.065 23 C -0.199 4.199 24 C -0.195 4.195 25 C -0.205 4.205 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.995 6.897 -10.772 23.736 hybrid contribution 0.464 -0.527 1.118 1.320 sum -19.532 6.370 -9.654 22.699 Atomic orbital electron populations 1.21800 0.94468 1.02015 1.01380 1.22262 0.96552 0.97403 1.02138 1.20643 0.93907 0.89827 0.80974 0.95458 1.20991 0.89761 1.39967 1.07250 0.93694 1.25564 0.96121 0.95531 0.99652 1.69955 1.10344 1.45429 1.31015 0.85997 0.79201 0.80330 0.78122 1.17420 1.20824 1.18195 1.86486 1.36356 1.63076 1.41097 1.23374 0.78935 0.75630 0.89981 1.90561 1.55928 1.59570 1.37151 1.21992 1.05710 0.97483 0.95040 0.83397 1.23324 1.00089 0.88691 1.05063 1.22655 0.88000 0.99458 1.01797 0.87711 1.21332 0.94202 1.01742 0.94001 1.20502 0.94355 0.95637 0.96012 1.21888 1.01587 0.95055 1.01332 1.21838 0.99482 1.02041 0.96184 1.21976 1.00197 1.00036 0.98262 0.93425 0.93565 0.90593 0.92228 0.90873 0.91479 0.89517 0.84349 0.89597 0.91019 0.91786 0.92525 0.93360 0.92571 0.92254 0.91847 0.93656 0.92142 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 8.57 71.98 0.62 -4.73 16 2 C -0.15 -6.61 5.15 30.59 0.16 -6.45 16 3 C 0.20 10.42 1.84 29.85 0.05 10.48 16 4 H 0.03 1.51 6.21 -2.39 -0.01 1.50 16 5 C -0.54 -32.62 9.48 25.60 0.24 -32.37 16 6 H 0.04 2.98 8.06 -2.91 -0.02 2.96 16 7 C 0.03 1.84 5.45 84.66 0.46 2.30 16 8 N -0.93 -57.61 13.96 21.45 0.30 -57.31 16 9 Si 0.94 44.91 24.41 68.60 1.67 46.59 16 10 H -0.25 -10.96 6.83 99.48 0.68 -10.28 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -12.12 6.53 99.48 0.65 -11.47 16 13 O -0.35 -16.86 9.81 -51.41 -0.50 -17.36 16 14 C 0.48 19.10 6.20 71.24 0.44 19.54 16 15 O -0.54 -23.72 13.40 21.98 0.29 -23.42 16 16 C -0.18 -5.17 6.02 -11.54 -0.07 -5.23 16 17 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 18 C -0.13 -3.03 9.88 30.62 0.30 -2.73 16 19 C -0.10 -2.26 3.77 -10.77 -0.04 -2.30 16 20 H 0.10 2.77 5.58 -2.39 -0.01 2.76 16 21 C -0.08 -1.21 4.55 30.60 0.14 -1.07 16 22 C -0.07 -0.95 0.80 -52.18 -0.04 -1.00 16 23 C -0.14 -2.03 8.23 71.98 0.59 -1.43 16 24 C -0.14 -1.62 8.47 71.98 0.61 -1.01 16 25 C -0.15 -2.52 8.23 71.98 0.59 -1.93 16 26 H 0.05 1.79 6.06 -2.39 -0.01 1.78 16 27 H 0.05 1.85 7.80 -2.39 -0.02 1.83 16 28 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.06 2.72 3.22 -2.39 -0.01 2.72 16 30 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.14 2.20 8.03 -2.39 -0.02 2.19 16 34 H 0.09 1.11 7.88 -2.39 -0.02 1.09 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.81 7.20 -2.39 -0.02 0.80 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.04 0.93 6.14 -2.39 -0.01 0.91 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.12 340.87 6.69 -62.43 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.87 Total: 17.01 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.06 Total: -27.94 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.30 Total: -57.31 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.21 Total: -40.78 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.59 kcal Total: -69.12 6.69 -62.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.391 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds