Wall clock time and date at job start Mon Mar 30 2020 01:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 C 1.50698 * 109.46815 * 120.00166 * 2 1 3 5 5 H 1.08010 * 120.00028 * 119.99858 * 4 2 1 6 6 C 1.37878 * 120.00110 * 299.99749 * 4 2 1 7 7 N 1.31508 * 119.99929 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47144 * 90.00019 * 8 6 4 10 10 H 1.48497 * 109.47142 * 210.00201 * 8 6 4 11 11 H 1.48504 * 109.47134 * 330.00163 * 8 6 4 12 12 O 1.45203 * 109.47099 * 239.99897 * 2 1 3 13 13 C 1.34226 * 116.99798 * 90.00574 * 12 2 1 14 14 O 1.20824 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 13 18 18 C 1.54246 * 108.89840 * 296.39821 * 17 16 15 19 19 C 1.50551 * 108.48820 * 159.17552 * 18 17 16 20 20 C 1.54059 * 112.41467 * 94.26568 * 19 18 17 21 21 C 1.54072 * 112.81751 * 318.28434 * 20 19 18 22 22 C 1.50475 * 112.49368 * 318.27849 * 21 20 19 23 23 C 1.45539 * 108.90122 * 173.60619 * 17 16 15 24 24 H 1.09003 * 109.46308 * 59.99827 * 1 2 3 25 25 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47198 * 300.00153 * 1 2 3 27 27 H 0.97001 * 120.00298 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46980 * 59.99650 * 15 13 12 29 29 H 1.08992 * 109.47158 * 299.99756 * 15 13 12 30 30 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 31 31 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 32 32 H 1.09000 * 108.87638 * 54.99871 * 17 16 15 33 33 H 1.09001 * 109.62686 * 278.97938 * 18 17 16 34 34 H 1.09003 * 109.62383 * 39.54791 * 18 17 16 35 35 H 1.08998 * 108.91961 * 333.51164 * 19 18 17 36 36 H 1.08999 * 108.83917 * 214.96608 * 19 18 17 37 37 H 1.09000 * 108.81846 * 197.42154 * 20 19 18 38 38 H 1.09004 * 108.72528 * 79.08259 * 20 19 18 39 39 H 1.09003 * 108.87842 * 197.50758 * 21 20 19 40 40 H 1.08992 * 108.87850 * 79.05827 * 21 20 19 41 41 H 1.09002 * 109.62942 * 334.45043 * 22 21 20 42 42 H 1.09002 * 109.63043 * 213.86433 * 22 21 20 43 43 H 1.09005 * 108.89099 * 303.44891 * 23 17 16 44 44 H 1.09004 * 108.89303 * 62.02755 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5655 3.7122 12 8 2.0141 -0.6845 -1.1856 13 6 2.2173 0.0640 -2.2811 14 8 1.9976 1.2517 -2.2505 15 6 2.7184 -0.5772 -3.5495 16 6 2.8626 0.4889 -4.6373 17 6 3.3720 -0.1620 -5.9249 18 6 4.7821 -0.7334 -5.6718 19 6 5.0658 -1.7832 -6.7130 20 6 5.8269 -1.2163 -7.9266 21 6 5.3005 0.1616 -8.3717 22 6 3.7979 0.2392 -8.3470 23 6 3.3601 0.8290 -6.9907 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7082 1.1608 3.4844 28 1 2.0088 -1.3369 -3.8774 29 1 3.6872 -1.0409 -3.3640 30 1 1.8936 0.9523 -4.8227 31 1 3.5720 1.2488 -4.3096 32 1 2.7033 -0.9792 -6.1953 33 1 5.5196 0.0659 -5.7449 34 1 4.8224 -1.1828 -4.6796 35 1 4.1212 -2.2059 -7.0552 36 1 5.6628 -2.5752 -6.2608 37 1 5.7321 -1.9143 -8.7584 38 1 6.8811 -1.1223 -7.6658 39 1 5.6472 0.3609 -9.3857 40 1 5.7040 0.9249 -7.7066 41 1 3.3777 -0.7597 -8.4646 42 1 3.4512 0.8830 -9.1553 43 1 2.3511 1.2294 -7.0891 44 1 4.0372 1.6409 -6.7253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847646614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:17 Heat of formation + Delta-G solvation = -132.583327 kcal Electronic energy + Delta-G solvation = -20806.764005 eV Core-core repulsion = 17722.425513 eV Total energy + Delta-G solvation = -3084.338492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81397 -39.07838 -35.84388 -34.44229 -33.22741 -32.35466 -30.61008 -29.38441 -25.95039 -25.29425 -24.76316 -22.85546 -21.14074 -20.27660 -19.54674 -19.24377 -16.96124 -16.55528 -15.90405 -15.67532 -15.20498 -14.87175 -14.69394 -14.40676 -13.94857 -13.51317 -13.13111 -13.03317 -12.62317 -12.31343 -12.24239 -12.18086 -11.80814 -11.62984 -11.22693 -11.05365 -11.03437 -10.86200 -10.79387 -10.60174 -10.53230 -10.48447 -10.36964 -10.31164 -10.25935 -10.14050 -9.54711 -9.46671 -8.87556 -8.47530 -6.16786 -4.23646 3.08772 3.25472 3.30725 3.34910 3.74428 4.33881 4.43438 4.54461 4.65097 4.90859 4.95917 5.03522 5.10701 5.15758 5.16459 5.29349 5.34099 5.41441 5.55957 5.61064 5.69864 5.82337 5.86375 5.94404 5.96976 5.98615 6.00328 6.07093 6.08952 6.16735 6.26019 6.29055 6.40882 6.47734 6.67504 6.91102 6.94840 7.22503 7.62504 7.75924 7.97941 8.17469 8.68765 8.93037 9.41908 10.90706 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038145 B = 0.003253 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.862236 B = 8604.763219 C = 9064.922706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.360 6.360 13 C 0.449 3.551 14 O -0.525 6.525 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.084 4.084 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.114 4.114 24 H 0.015 0.985 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.266 0.734 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -3.502 -20.212 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.276 6.276 13 C 0.292 3.708 14 O -0.415 6.415 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.151 4.151 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.524 -3.039 -19.998 21.254 hybrid contribution 0.186 -0.269 0.922 0.978 sum 6.710 -3.308 -19.077 20.491 Atomic orbital electron populations 1.22153 0.97653 1.00040 1.01351 1.20600 0.91351 0.93891 0.77984 0.93659 1.21047 1.32409 1.13443 0.88984 0.91344 1.24897 0.94940 0.95124 0.99086 1.69901 1.36079 1.22651 1.24133 0.86273 0.78539 0.79903 0.81417 1.20404 1.20954 1.19586 1.86482 1.75800 1.43786 1.21515 1.23488 0.74897 0.86080 0.86358 1.90585 1.48936 1.17127 1.84895 1.21445 1.03404 0.99742 0.90886 1.21539 1.02488 0.97283 0.92952 1.20122 0.96884 0.98479 0.94781 1.21541 0.96499 0.98679 0.98945 1.21351 1.00487 0.98216 0.95568 1.21912 0.99441 0.96461 0.97595 1.21348 0.96091 0.97500 1.00738 1.21322 0.95804 1.01220 0.97066 1.20532 1.01766 0.98527 0.94281 0.96577 0.94477 0.88290 0.92425 0.88565 0.88179 0.91173 0.91095 0.91303 0.91598 0.91179 0.92069 0.92396 0.92639 0.92532 0.92760 0.92018 0.91679 0.92216 0.92166 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 2 C 0.21 5.90 2.56 -27.88 -0.07 5.83 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.91 8.90 -34.44 -0.31 -15.21 16 5 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 O -0.36 -8.76 9.86 -39.25 -0.39 -9.15 16 13 C 0.45 9.45 7.93 36.01 0.29 9.74 16 14 O -0.52 -12.56 15.20 -18.75 -0.28 -12.84 16 15 C -0.12 -1.70 5.59 -27.88 -0.16 -1.85 16 16 C -0.11 -1.35 3.89 -26.73 -0.10 -1.45 16 17 C -0.08 -0.83 1.71 -93.49 -0.16 -0.99 16 18 C -0.12 -1.12 4.91 -27.30 -0.13 -1.25 16 19 C -0.12 -0.98 5.32 -27.40 -0.15 -1.12 16 20 C -0.12 -0.88 5.85 -25.62 -0.15 -1.03 16 21 C -0.12 -0.91 5.31 -27.43 -0.15 -1.06 16 22 C -0.12 -0.92 5.61 -27.34 -0.15 -1.07 16 23 C -0.11 -1.04 4.44 -29.60 -0.13 -1.17 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.30 6.14 -51.93 -0.32 0.98 16 30 H 0.07 0.96 8.01 -51.93 -0.42 0.55 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 0.65 7.46 -51.93 -0.39 0.27 16 33 H 0.07 0.63 6.97 -51.93 -0.36 0.27 16 34 H 0.07 0.69 5.82 -51.93 -0.30 0.39 16 35 H 0.06 0.50 6.63 -51.93 -0.34 0.15 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.50 6.62 -51.93 -0.34 0.16 16 41 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 44 H 0.06 0.58 7.46 -51.93 -0.39 0.20 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -30.69 336.61 -8.79 -39.48 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.68 Total: -1.11 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.12 Total: -12.70 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.63 Total: -25.03 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.67 Total: -21.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.69 -8.79 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.101 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds