Wall clock time and date at job start Mon Mar 30 2020 01:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 C 1.50698 * 109.46815 * 120.00166 * 2 1 3 5 5 H 1.08010 * 120.00028 * 119.99858 * 4 2 1 6 6 C 1.37878 * 120.00110 * 299.99749 * 4 2 1 7 7 N 1.31508 * 119.99929 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47144 * 90.00019 * 8 6 4 10 10 H 1.48497 * 109.47142 * 210.00201 * 8 6 4 11 11 H 1.48504 * 109.47134 * 330.00163 * 8 6 4 12 12 O 1.45203 * 109.47099 * 239.99897 * 2 1 3 13 13 C 1.34226 * 116.99798 * 90.00574 * 12 2 1 14 14 O 1.20824 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 13 18 18 C 1.54246 * 108.89840 * 296.39821 * 17 16 15 19 19 C 1.50551 * 108.48820 * 159.17552 * 18 17 16 20 20 C 1.54059 * 112.41467 * 94.26568 * 19 18 17 21 21 C 1.54072 * 112.81751 * 318.28434 * 20 19 18 22 22 C 1.50475 * 112.49368 * 318.27849 * 21 20 19 23 23 C 1.45539 * 108.90122 * 173.60619 * 17 16 15 24 24 H 1.09003 * 109.46308 * 59.99827 * 1 2 3 25 25 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47198 * 300.00153 * 1 2 3 27 27 H 0.97001 * 120.00298 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46980 * 59.99650 * 15 13 12 29 29 H 1.08992 * 109.47158 * 299.99756 * 15 13 12 30 30 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 31 31 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 32 32 H 1.09000 * 108.87638 * 54.99871 * 17 16 15 33 33 H 1.09001 * 109.62686 * 278.97938 * 18 17 16 34 34 H 1.09003 * 109.62383 * 39.54791 * 18 17 16 35 35 H 1.08998 * 108.91961 * 333.51164 * 19 18 17 36 36 H 1.08999 * 108.83917 * 214.96608 * 19 18 17 37 37 H 1.09000 * 108.81846 * 197.42154 * 20 19 18 38 38 H 1.09004 * 108.72528 * 79.08259 * 20 19 18 39 39 H 1.09003 * 108.87842 * 197.50758 * 21 20 19 40 40 H 1.08992 * 108.87850 * 79.05827 * 21 20 19 41 41 H 1.09002 * 109.62942 * 334.45043 * 22 21 20 42 42 H 1.09002 * 109.63043 * 213.86433 * 22 21 20 43 43 H 1.09005 * 108.89099 * 303.44891 * 23 17 16 44 44 H 1.09004 * 108.89303 * 62.02755 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5655 3.7122 12 8 2.0141 -0.6845 -1.1856 13 6 2.2173 0.0640 -2.2811 14 8 1.9976 1.2517 -2.2505 15 6 2.7184 -0.5772 -3.5495 16 6 2.8626 0.4889 -4.6373 17 6 3.3720 -0.1620 -5.9249 18 6 4.7821 -0.7334 -5.6718 19 6 5.0658 -1.7832 -6.7130 20 6 5.8269 -1.2163 -7.9266 21 6 5.3005 0.1616 -8.3717 22 6 3.7979 0.2392 -8.3470 23 6 3.3601 0.8290 -6.9907 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7082 1.1608 3.4844 28 1 2.0088 -1.3369 -3.8774 29 1 3.6872 -1.0409 -3.3640 30 1 1.8936 0.9523 -4.8227 31 1 3.5720 1.2488 -4.3096 32 1 2.7033 -0.9792 -6.1953 33 1 5.5196 0.0659 -5.7449 34 1 4.8224 -1.1828 -4.6796 35 1 4.1212 -2.2059 -7.0552 36 1 5.6628 -2.5752 -6.2608 37 1 5.7321 -1.9143 -8.7584 38 1 6.8811 -1.1223 -7.6658 39 1 5.6472 0.3609 -9.3857 40 1 5.7040 0.9249 -7.7066 41 1 3.3777 -0.7597 -8.4646 42 1 3.4512 0.8830 -9.1553 43 1 2.3511 1.2294 -7.0891 44 1 4.0372 1.6409 -6.7253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847646614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:16 Heat of formation + Delta-G solvation = -147.459161 kcal Electronic energy + Delta-G solvation = -20807.409069 eV Core-core repulsion = 17722.425513 eV Total energy + Delta-G solvation = -3084.983556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36031 -40.10626 -37.67784 -35.44079 -35.31936 -33.04171 -32.02083 -31.10440 -27.48995 -26.89237 -25.52292 -24.10034 -22.73115 -21.16421 -21.06473 -20.03963 -18.82616 -18.46380 -17.28343 -17.17243 -16.57230 -16.16581 -15.90979 -15.36443 -14.89030 -14.81337 -14.66217 -14.08962 -13.87810 -13.74491 -13.50220 -13.22933 -13.03075 -12.96260 -12.87887 -12.83612 -12.75740 -12.39180 -12.15656 -12.04630 -11.60561 -11.49260 -11.37664 -11.34975 -11.22190 -11.13348 -11.10330 -10.99352 -10.86434 -10.61154 -8.29933 -6.47324 1.37735 1.41491 1.43607 1.55398 2.07423 2.42801 3.00592 3.67825 3.75745 3.79864 4.00203 4.14182 4.17683 4.35804 4.39199 4.44936 4.48444 4.51653 4.55960 4.62799 4.65778 4.76407 4.82822 4.91016 4.95719 5.00539 5.14002 5.16429 5.19610 5.24883 5.29931 5.37246 5.42725 5.43180 5.45131 5.47533 5.56354 5.62054 5.66193 5.67434 5.92125 6.11039 6.58840 6.99505 7.25474 8.77946 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038145 B = 0.003253 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.862236 B = 8604.763219 C = 9064.922706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.261 1.261 12 O -0.367 6.367 13 C 0.440 3.560 14 O -0.559 6.559 15 C -0.105 4.105 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.115 4.115 24 H 0.022 0.978 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.271 0.729 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -5.259 -21.050 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.185 1.185 12 O -0.283 6.283 13 C 0.286 3.714 14 O -0.451 6.451 15 C -0.142 4.142 16 C -0.138 4.138 17 C -0.092 4.092 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.152 4.152 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.218 -4.798 -20.866 22.595 hybrid contribution -0.026 0.353 1.120 1.175 sum 7.192 -4.445 -19.746 21.480 Atomic orbital electron populations 1.21978 0.96814 1.00413 1.00750 1.20314 0.92029 0.91972 0.79473 0.97771 1.21328 1.33459 1.13949 0.90020 0.91360 1.25878 0.94676 0.95689 1.02276 1.70021 1.36572 1.23770 1.25255 0.85151 0.78125 0.78960 0.76983 1.19702 1.19988 1.18534 1.86481 1.76210 1.43949 1.21701 1.24844 0.73701 0.85890 0.86994 1.90568 1.50365 1.18829 1.85339 1.21637 1.04740 1.00337 0.87436 1.21528 1.01644 0.96670 0.93910 1.20064 0.97332 0.98684 0.93090 1.21536 0.95931 0.98925 0.99253 1.21331 1.00917 0.97823 0.95422 1.21910 0.99346 0.96494 0.97599 1.21350 0.95893 0.97400 1.01083 1.21288 0.95947 1.01479 0.96205 1.20529 1.01531 0.98235 0.94943 0.95875 0.93440 0.90118 0.91970 0.85773 0.86007 0.92312 0.92740 0.90105 0.92033 0.91548 0.91593 0.92015 0.91787 0.92509 0.91913 0.92815 0.91190 0.91534 0.92432 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 2 C 0.22 12.19 2.56 29.85 0.08 12.26 16 3 H 0.00 0.28 7.16 -2.39 -0.02 0.27 16 4 C -0.55 -31.85 8.90 25.60 0.23 -31.62 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 12 O -0.37 -18.06 9.86 -51.38 -0.51 -18.57 16 13 C 0.44 18.70 7.93 71.24 0.56 19.26 16 14 O -0.56 -27.59 15.20 21.97 0.33 -27.26 16 15 C -0.10 -2.88 5.59 29.85 0.17 -2.72 16 16 C -0.10 -2.49 3.89 30.59 0.12 -2.37 16 17 C -0.07 -1.32 1.71 -12.65 -0.02 -1.34 16 18 C -0.12 -2.02 4.91 30.22 0.15 -1.87 16 19 C -0.12 -1.65 5.32 30.16 0.16 -1.49 16 20 C -0.12 -1.50 5.85 31.32 0.18 -1.31 16 21 C -0.12 -1.60 5.31 30.14 0.16 -1.44 16 22 C -0.11 -1.53 5.61 30.20 0.17 -1.36 16 23 C -0.11 -1.95 4.44 28.74 0.13 -1.82 16 24 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.08 4.56 6.07 -2.39 -0.01 4.55 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.12 2.90 6.14 -2.39 -0.01 2.89 16 30 H 0.06 1.60 8.01 -2.39 -0.02 1.58 16 31 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.08 1.31 7.46 -2.39 -0.02 1.29 16 33 H 0.06 1.10 6.97 -2.39 -0.02 1.08 16 34 H 0.07 1.17 5.82 -2.39 -0.01 1.16 16 35 H 0.07 0.88 6.63 -2.39 -0.02 0.86 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.81 6.62 -2.39 -0.02 0.79 16 41 H 0.07 0.91 6.98 -2.39 -0.02 0.89 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.01 8.04 -2.38 -0.02 0.99 16 44 H 0.05 1.00 7.46 -2.38 -0.02 0.98 16 Total: -1.00 -67.03 336.61 6.25 -60.78 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.95 Total: 14.60 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 3.20 Total: -21.43 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.24 Total: -53.37 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.17 Total: -45.83 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.03 6.25 -60.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.680 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds