Wall clock time and date at job start Mon Mar 30 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47482 * 270.00384 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00471 * 3 2 1 6 6 H 1.48495 * 109.47349 * 150.00463 * 3 2 1 7 7 C 1.37877 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00204 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46878 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00030 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47153 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47154 * 180.02562 * 15 14 12 17 17 C 1.54065 * 108.87686 * 297.97781 * 16 15 14 18 18 C 1.54066 * 112.81762 * 197.50425 * 17 16 15 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87636 * 175.00284 * 16 15 14 23 23 H 0.97002 * 120.00919 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47223 * 60.00015 * 9 7 2 25 25 H 1.09002 * 109.47010 * 299.99368 * 9 7 2 26 26 H 1.08994 * 109.47572 * 59.99801 * 10 9 7 27 27 H 1.09002 * 109.46864 * 299.99556 * 10 9 7 28 28 H 1.08999 * 109.46758 * 59.99975 * 14 12 11 29 29 H 1.08998 * 109.47194 * 300.00113 * 14 12 11 30 30 H 1.09009 * 109.47084 * 60.00274 * 15 14 12 31 31 H 1.08995 * 109.47404 * 300.00730 * 15 14 12 32 32 H 1.09002 * 108.85122 * 56.44317 * 16 15 14 33 33 H 1.09005 * 108.81720 * 318.36964 * 17 16 15 34 34 H 1.09004 * 108.81387 * 76.75211 * 17 16 15 35 35 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 36 36 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 37 37 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 38 38 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 39 39 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 40 40 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 41 41 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 42 42 H 1.08995 * 108.89787 * 301.28165 * 21 20 19 43 43 H 1.09006 * 109.62936 * 95.21889 * 22 16 15 44 44 H 1.08998 * 109.78811 * 334.73404 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 8 5.4736 -2.6363 -0.0009 12 6 6.0831 -3.8323 -0.0003 13 8 5.4250 -4.8456 0.0007 14 6 7.5880 -3.9111 -0.0008 15 6 8.0219 -5.3783 0.0008 16 6 9.5498 -5.4583 0.0009 17 6 10.0834 -4.8027 -1.2872 18 6 11.5396 -5.1973 -1.5994 19 6 12.4080 -5.2130 -0.3706 20 6 12.4401 -6.6503 0.1882 21 6 11.2530 -6.9693 0.9673 22 6 9.9618 -6.9000 0.1265 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6799 -0.8912 26 1 3.6579 -3.1505 -0.8906 27 1 3.6586 -3.1500 0.8893 28 1 7.9780 -3.4163 0.8887 29 1 7.9774 -3.4176 -0.8912 30 1 7.6318 -5.8735 -0.8886 31 1 7.6324 -5.8714 0.8914 32 1 9.9313 -4.9064 0.8600 33 1 9.4509 -5.1031 -2.1226 34 1 10.0300 -3.7194 -1.1785 35 1 11.9525 -4.4852 -2.3139 36 1 11.5472 -6.1901 -2.0493 37 1 11.9945 -4.5379 0.3787 38 1 13.4185 -4.8992 -0.6324 39 1 12.5153 -7.3508 -0.6435 40 1 13.3185 -6.7622 0.8240 41 1 11.3567 -7.9758 1.3726 42 1 11.1727 -6.2630 1.7936 43 1 10.1473 -7.3155 -0.8641 44 1 9.1727 -7.4677 0.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847672503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:29 Heat of formation + Delta-G solvation = -135.910371 kcal Electronic energy + Delta-G solvation = -20286.008114 eV Core-core repulsion = 17201.525350 eV Total energy + Delta-G solvation = -3084.482763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15802 -39.34191 -36.34427 -34.77798 -33.30361 -32.56843 -31.06797 -30.35176 -26.24699 -25.26153 -24.69935 -22.60444 -20.97604 -20.67782 -20.22629 -19.22103 -17.48506 -16.63255 -16.35967 -15.89422 -15.77474 -15.21139 -14.93471 -14.25346 -14.21131 -14.06387 -13.31745 -13.15748 -13.07202 -12.97166 -12.61795 -12.33830 -12.26830 -11.75523 -11.49437 -11.34421 -11.25581 -11.03719 -10.89840 -10.69412 -10.66893 -10.56496 -10.49661 -10.43248 -10.41205 -9.95574 -9.84580 -9.68514 -9.34440 -8.62444 -6.12893 -4.14068 2.56142 3.16231 3.27786 3.35100 3.39662 4.28083 4.35664 4.38566 4.52187 4.69506 4.79127 4.85351 4.95595 5.04705 5.08048 5.09650 5.19676 5.20619 5.29346 5.45911 5.51847 5.52039 5.65836 5.74632 5.82681 5.83670 5.86980 5.90435 5.94865 5.98646 5.99182 6.00353 6.07101 6.09233 6.17939 6.29150 6.46545 6.83792 7.20881 7.23378 7.62744 8.18282 8.39920 8.88783 9.46674 10.99690 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002790 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.093971 B =10032.766344 C =10443.377488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.364 6.364 12 C 0.453 3.547 13 O -0.517 6.517 14 C -0.117 4.117 15 C -0.105 4.105 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.113 4.113 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.661 -11.289 -0.464 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.281 6.281 12 C 0.296 3.704 13 O -0.406 6.406 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.103 4.103 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.151 4.151 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.250 -11.445 -0.463 28.640 hybrid contribution 0.105 0.856 -0.037 0.863 sum 26.354 -10.589 -0.500 28.406 Atomic orbital electron populations 1.69893 1.06284 1.27208 1.50146 1.24943 0.94774 0.99201 0.94138 0.86739 0.80418 0.83248 0.78733 1.20059 1.21173 1.18764 1.20853 0.88324 0.95033 1.52333 0.90674 1.19621 0.96992 0.90246 0.97830 1.23355 0.72525 1.01483 1.01695 1.86488 1.26195 1.32510 1.82863 1.23673 0.92028 0.82008 0.72679 1.90635 1.67565 1.36687 1.45762 1.21465 0.88520 0.99888 1.05547 1.21640 0.94745 0.94087 1.03800 1.20993 0.94411 0.96468 0.98450 1.22062 0.95620 1.00365 0.97397 1.21337 0.94980 1.01603 0.97689 1.21352 0.99393 0.96877 0.97985 1.20497 0.98089 0.96902 1.00012 1.20486 0.94941 1.01469 0.98719 1.21405 0.97055 0.96132 1.00485 0.92435 0.95418 0.95843 0.91802 0.91783 0.88074 0.87937 0.90988 0.90935 0.91084 0.91950 0.91942 0.92464 0.92204 0.91503 0.92248 0.92317 0.92640 0.92472 0.92131 0.91639 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.79 5.40 37.16 0.20 1.99 16 11 O -0.36 -6.99 10.22 -39.26 -0.40 -7.39 16 12 C 0.45 7.56 7.96 36.01 0.29 7.85 16 13 O -0.52 -10.06 15.73 -18.75 -0.29 -10.36 16 14 C -0.12 -1.30 5.53 -27.89 -0.15 -1.46 16 15 C -0.11 -1.06 3.71 -26.73 -0.10 -1.16 16 16 C -0.08 -0.66 1.71 -91.32 -0.16 -0.82 16 17 C -0.12 -0.87 4.42 -25.62 -0.11 -0.98 16 18 C -0.12 -0.80 5.31 -27.44 -0.15 -0.94 16 19 C -0.12 -0.75 5.61 -27.34 -0.15 -0.91 16 20 C -0.12 -0.73 5.26 -29.60 -0.16 -0.89 16 21 C -0.12 -0.79 5.26 -29.60 -0.16 -0.94 16 22 C -0.11 -0.84 5.13 -27.34 -0.14 -0.98 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 27 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.99 6.83 -51.93 -0.35 0.64 16 30 H 0.07 0.80 8.03 -51.92 -0.42 0.38 16 31 H 0.07 0.80 7.92 -51.93 -0.41 0.38 16 32 H 0.07 0.54 6.62 -51.93 -0.34 0.20 16 33 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 34 H 0.06 0.45 7.36 -51.93 -0.38 0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 6.63 -51.93 -0.34 0.06 16 37 H 0.07 0.45 6.97 -51.93 -0.36 0.08 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.37 7.47 -51.93 -0.39 -0.02 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.41 7.46 -51.93 -0.39 0.02 16 43 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 44 H 0.07 0.52 7.60 -51.93 -0.39 0.12 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.43 338.84 -8.70 -40.13 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.87 Total: -4.49 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.34 Total: -13.10 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.70 Total: -17.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.43 -8.70 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847672503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.784 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds