Wall clock time and date at job start Mon Mar 30 2020 00:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47482 * 270.00384 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00471 * 3 2 1 6 6 H 1.48495 * 109.47349 * 150.00463 * 3 2 1 7 7 C 1.37877 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00204 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46878 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00030 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47153 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47154 * 180.02562 * 15 14 12 17 17 C 1.54065 * 108.87686 * 297.97781 * 16 15 14 18 18 C 1.54066 * 112.81762 * 197.50425 * 17 16 15 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87636 * 175.00284 * 16 15 14 23 23 H 0.97002 * 120.00919 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47223 * 60.00015 * 9 7 2 25 25 H 1.09002 * 109.47010 * 299.99368 * 9 7 2 26 26 H 1.08994 * 109.47572 * 59.99801 * 10 9 7 27 27 H 1.09002 * 109.46864 * 299.99556 * 10 9 7 28 28 H 1.08999 * 109.46758 * 59.99975 * 14 12 11 29 29 H 1.08998 * 109.47194 * 300.00113 * 14 12 11 30 30 H 1.09009 * 109.47084 * 60.00274 * 15 14 12 31 31 H 1.08995 * 109.47404 * 300.00730 * 15 14 12 32 32 H 1.09002 * 108.85122 * 56.44317 * 16 15 14 33 33 H 1.09005 * 108.81720 * 318.36964 * 17 16 15 34 34 H 1.09004 * 108.81387 * 76.75211 * 17 16 15 35 35 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 36 36 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 37 37 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 38 38 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 39 39 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 40 40 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 41 41 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 42 42 H 1.08995 * 108.89787 * 301.28165 * 21 20 19 43 43 H 1.09006 * 109.62936 * 95.21889 * 22 16 15 44 44 H 1.08998 * 109.78811 * 334.73404 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 8 5.4736 -2.6363 -0.0009 12 6 6.0831 -3.8323 -0.0003 13 8 5.4250 -4.8456 0.0007 14 6 7.5880 -3.9111 -0.0008 15 6 8.0219 -5.3783 0.0008 16 6 9.5498 -5.4583 0.0009 17 6 10.0834 -4.8027 -1.2872 18 6 11.5396 -5.1973 -1.5994 19 6 12.4080 -5.2130 -0.3706 20 6 12.4401 -6.6503 0.1882 21 6 11.2530 -6.9693 0.9673 22 6 9.9618 -6.9000 0.1265 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6799 -0.8912 26 1 3.6579 -3.1505 -0.8906 27 1 3.6586 -3.1500 0.8893 28 1 7.9780 -3.4163 0.8887 29 1 7.9774 -3.4176 -0.8912 30 1 7.6318 -5.8735 -0.8886 31 1 7.6324 -5.8714 0.8914 32 1 9.9313 -4.9064 0.8600 33 1 9.4509 -5.1031 -2.1226 34 1 10.0300 -3.7194 -1.1785 35 1 11.9525 -4.4852 -2.3139 36 1 11.5472 -6.1901 -2.0493 37 1 11.9945 -4.5379 0.3787 38 1 13.4185 -4.8992 -0.6324 39 1 12.5153 -7.3508 -0.6435 40 1 13.3185 -6.7622 0.8240 41 1 11.3567 -7.9758 1.3726 42 1 11.1727 -6.2630 1.7936 43 1 10.1473 -7.3155 -0.8641 44 1 9.1727 -7.4677 0.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847672503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:28 Heat of formation + Delta-G solvation = -151.913271 kcal Electronic energy + Delta-G solvation = -20286.702051 eV Core-core repulsion = 17201.525350 eV Total energy + Delta-G solvation = -3085.176701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50687 -40.02965 -37.82869 -35.57211 -35.39929 -33.09765 -32.86894 -31.40612 -27.60752 -26.30732 -25.61217 -23.50595 -22.60612 -21.70912 -21.23372 -19.83669 -19.24030 -18.33908 -17.75033 -17.23564 -16.48249 -16.29277 -16.04326 -15.60505 -15.30922 -14.87584 -14.71161 -14.30076 -14.25369 -13.78753 -13.71996 -13.32129 -13.27901 -13.03766 -12.89057 -12.51423 -12.48170 -12.38014 -12.12075 -11.81714 -11.59348 -11.57220 -11.50371 -11.45018 -11.39114 -11.19936 -11.09626 -11.02589 -10.92621 -10.82355 -8.35493 -6.44123 1.21582 1.37824 1.39705 1.52581 1.78237 2.33857 2.99207 3.64174 3.70409 3.81336 3.89931 4.09387 4.12211 4.16193 4.19044 4.35015 4.40199 4.43699 4.50503 4.52855 4.61176 4.64628 4.66852 4.85966 4.96450 5.00181 5.05320 5.17048 5.19914 5.23672 5.27372 5.32409 5.36339 5.39865 5.44495 5.44570 5.49634 5.54013 5.60634 5.63366 5.69497 6.14196 6.61853 6.75762 7.21096 8.80667 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002790 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.093971 B =10032.766344 C =10443.377488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.092 3.908 11 O -0.364 6.364 12 C 0.449 3.551 13 O -0.550 6.550 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.076 4.076 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.114 4.114 23 H 0.271 0.729 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.733 -10.004 -0.394 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.281 6.281 12 C 0.294 3.706 13 O -0.440 6.440 14 C -0.143 4.143 15 C -0.138 4.138 16 C -0.094 4.094 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.346 -10.183 -0.394 31.065 hybrid contribution -0.883 0.319 -0.064 0.941 sum 28.463 -9.864 -0.458 30.127 Atomic orbital electron populations 1.70042 1.08370 1.28681 1.51316 1.25987 0.95706 1.03696 0.93360 0.85567 0.79517 0.77478 0.79579 1.18723 1.20566 1.16659 1.21128 0.90808 0.93763 1.52540 0.94852 1.19458 0.94107 0.91982 0.98495 1.22904 0.74622 0.99742 1.00851 1.86483 1.24140 1.34102 1.83333 1.24852 0.93979 0.80654 0.71093 1.90630 1.68680 1.37505 1.47214 1.21660 0.83851 1.00998 1.07778 1.21619 0.96380 0.93199 1.02638 1.20932 0.92419 0.96880 0.99165 1.22073 0.96002 1.00686 0.96777 1.21321 0.94543 1.01583 0.98000 1.21352 0.99644 0.96826 0.97714 1.20491 0.98053 0.96908 1.00026 1.20463 0.94581 1.01703 0.98594 1.21395 0.97368 0.95831 1.00551 0.92017 0.94584 0.94688 0.92740 0.92746 0.85470 0.85639 0.92341 0.92083 0.90183 0.92572 0.91250 0.92063 0.92451 0.91534 0.91659 0.92418 0.92050 0.92251 0.92026 0.91777 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.61 5.47 84.66 0.46 1.08 16 3 Si 0.96 43.48 27.47 68.60 1.88 45.37 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 9 C 0.00 -0.14 4.42 29.85 0.13 -0.01 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.36 -13.46 10.22 -51.43 -0.53 -13.98 16 12 C 0.45 14.46 7.96 71.24 0.57 15.03 16 13 O -0.55 -21.43 15.73 21.97 0.35 -21.09 16 14 C -0.11 -2.10 5.53 29.85 0.17 -1.93 16 15 C -0.10 -1.89 3.71 30.59 0.11 -1.78 16 16 C -0.08 -1.03 1.71 -11.25 -0.02 -1.05 16 17 C -0.12 -1.48 4.42 31.31 0.14 -1.34 16 18 C -0.12 -1.31 5.31 30.14 0.16 -1.15 16 19 C -0.12 -1.22 5.61 30.20 0.17 -1.05 16 20 C -0.12 -1.22 5.26 28.74 0.15 -1.07 16 21 C -0.12 -1.33 5.26 28.74 0.15 -1.18 16 22 C -0.11 -1.54 5.13 30.20 0.15 -1.39 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 25 H 0.03 1.60 7.57 -2.39 -0.02 1.59 16 26 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 27 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 28 H 0.13 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.13 2.00 6.83 -2.39 -0.02 1.98 16 30 H 0.06 1.26 8.03 -2.38 -0.02 1.24 16 31 H 0.06 1.29 7.92 -2.39 -0.02 1.27 16 32 H 0.08 0.98 6.62 -2.39 -0.02 0.97 16 33 H 0.06 0.78 7.93 -2.38 -0.02 0.76 16 34 H 0.07 0.78 7.36 -2.38 -0.02 0.77 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.67 6.63 -2.39 -0.02 0.66 16 37 H 0.07 0.70 6.97 -2.39 -0.02 0.69 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.62 7.47 -2.39 -0.02 0.60 16 40 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.70 7.46 -2.39 -0.02 0.68 16 43 H 0.06 0.88 6.98 -2.38 -0.02 0.87 16 44 H 0.06 0.88 7.60 -2.39 -0.02 0.86 16 Total: -1.00 -68.57 338.84 5.88 -62.69 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.89 Total: 8.88 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 2.98 Total: -23.09 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.18 Total: -35.07 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -68.57 5.88 -62.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847672503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.223 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds