Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47208 * 2 1 4 4 C 1.53003 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46946 * 54.99984 * 4 3 2 6 6 C 1.52995 * 109.47418 * 294.99835 * 4 3 2 7 7 C 1.52996 * 109.47311 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47107 * 60.00206 * 7 6 4 9 9 C 1.53003 * 109.47065 * 300.00187 * 8 7 6 10 10 C 1.52996 * 109.47311 * 59.99938 * 9 8 7 11 11 H 1.09001 * 109.47211 * 59.99996 * 10 9 8 12 12 O 1.45203 * 109.47313 * 180.02562 * 10 9 8 13 13 C 1.34229 * 116.99579 * 269.99744 * 12 10 9 14 14 O 1.20819 * 120.00199 * 0.02562 * 13 12 10 15 15 C 1.50706 * 119.99505 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.46735 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47116 * 59.99536 * 21 19 17 23 23 H 1.48500 * 109.46585 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46730 * 299.99515 * 21 19 17 25 25 H 1.09007 * 109.46882 * 60.00027 * 1 2 3 26 26 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47612 * 300.00592 * 1 2 3 28 28 H 1.08992 * 109.47408 * 239.99276 * 2 1 3 29 29 H 1.09001 * 109.46464 * 119.99392 * 2 1 3 30 30 H 1.09005 * 109.47617 * 59.99620 * 3 2 1 31 31 H 1.08998 * 109.46925 * 299.99648 * 3 2 1 32 32 H 1.09001 * 109.47184 * 300.00003 * 6 4 3 33 33 H 1.08999 * 109.46925 * 59.99940 * 6 4 3 34 34 H 1.08994 * 109.47647 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47211 * 300.00246 * 7 6 4 36 36 H 1.09001 * 109.47053 * 59.99943 * 8 7 6 37 37 H 1.09000 * 109.47375 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.46986 * 299.99797 * 9 8 7 39 39 H 1.08999 * 109.47122 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.46797 * 60.00347 * 15 13 12 41 41 H 1.08992 * 109.47518 * 300.00344 * 15 13 12 42 42 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 43 43 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 44 44 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 5.6095 0.8325 1.3086 8 6 6.1201 2.2692 1.1826 9 6 5.6106 2.8787 -0.1251 10 6 4.0806 2.8793 -0.1254 11 1 3.7173 3.4691 0.7161 12 8 3.5970 3.4571 -1.3667 13 6 3.3944 4.7839 -1.3828 14 8 3.6142 5.4407 -0.3929 15 6 2.8938 5.4544 -2.6362 16 6 2.7489 6.9571 -2.3876 17 6 2.2477 7.6275 -3.6408 18 1 2.0517 7.0404 -4.5258 19 6 2.0394 8.9904 -3.6575 20 7 2.2777 9.7052 -2.5796 21 14 1.4175 9.8213 -5.2106 22 1 0.0972 9.2519 -5.5818 23 1 1.2770 11.2798 -4.9693 24 1 2.3834 9.5925 -6.3150 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.7159 1.4227 2.1498 33 1 3.7162 -0.1907 1.3978 34 1 5.9725 0.3979 2.2399 35 1 5.9728 0.2426 0.4670 36 1 5.7568 2.8590 2.0241 37 1 7.2101 2.2688 1.1824 38 1 5.9739 2.2889 -0.9666 39 1 5.9739 3.9024 -0.2146 40 1 1.9248 5.0366 -2.9095 41 1 3.6033 5.2865 -3.4464 42 1 2.0391 7.1247 -1.5776 43 1 3.7177 7.3752 -2.1141 44 1 2.1315 10.6641 -2.5913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851453490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = -143.294322 kcal Electronic energy + Delta-G solvation = -20993.206148 eV Core-core repulsion = 17908.403193 eV Total energy + Delta-G solvation = -3084.802955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34590 -38.49832 -35.69704 -34.99827 -33.55506 -31.22626 -30.97980 -30.09464 -26.37716 -25.76086 -23.34295 -22.47057 -21.47614 -20.66156 -20.05169 -19.57955 -17.32106 -16.44466 -15.77140 -15.68896 -15.37144 -14.78462 -14.46060 -14.28736 -14.06612 -13.57199 -13.44103 -13.21939 -12.88790 -12.57153 -12.33552 -12.22291 -11.89171 -11.55973 -11.32281 -11.24606 -11.15720 -11.06892 -10.93715 -10.87205 -10.75500 -10.65715 -10.49103 -10.28915 -10.02835 -9.87713 -9.74723 -9.47263 -9.16975 -8.36120 -6.00064 -4.04993 2.89669 3.16725 3.33684 3.38283 3.40656 4.41263 4.45324 4.53724 4.69675 4.83593 4.94220 5.03809 5.07234 5.14912 5.22650 5.32056 5.34265 5.35172 5.47156 5.49735 5.60528 5.68201 5.75781 5.78027 5.86798 5.91313 5.95073 5.97950 6.01001 6.09314 6.15032 6.16100 6.20295 6.22123 6.32851 6.34846 6.73550 7.04239 7.67878 7.75606 7.99720 8.29582 8.47934 9.02020 9.58929 11.10927 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.003870 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.394977 B = 7233.744347 C = 8135.785647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.081 4.081 5 H 0.079 0.921 6 C -0.113 4.113 7 C -0.122 4.122 8 C -0.116 4.116 9 C -0.136 4.136 10 C 0.091 3.909 11 H 0.081 0.919 12 O -0.360 6.360 13 C 0.455 3.545 14 O -0.506 6.506 15 C -0.104 4.104 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 -21.063 6.872 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.099 4.099 5 H 0.098 0.902 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.173 4.173 10 C 0.036 3.964 11 H 0.099 0.901 12 O -0.278 6.278 13 C 0.299 3.701 14 O -0.393 6.393 15 C -0.142 4.142 16 C -0.003 4.003 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.357 -20.691 7.275 22.188 hybrid contribution -0.261 0.641 -0.689 0.977 sum 3.095 -20.050 6.586 21.330 Atomic orbital electron populations 1.21783 0.95991 1.01286 1.02056 1.21553 0.95780 0.96877 1.01772 1.21663 0.94215 0.96883 1.02863 1.21239 0.95836 0.94144 0.98686 0.90230 1.21628 0.95446 1.01083 0.96912 1.21586 0.95645 0.96874 1.01825 1.21484 1.00458 0.95995 0.97403 1.21929 0.94771 1.02111 0.98520 1.22626 0.93637 0.93752 0.86358 0.90070 1.86601 1.77389 1.25088 1.38707 1.24727 0.73828 0.79812 0.91762 1.90613 1.47728 1.64641 1.36320 1.21747 1.01654 0.99560 0.91196 1.19002 0.98485 0.85391 0.97462 1.21128 1.45138 0.92716 0.97732 0.92387 1.25016 0.95482 0.97481 0.96292 1.69984 1.48309 1.06678 1.27853 0.86608 0.79403 0.78339 0.83353 1.20163 1.21252 1.20160 0.92559 0.93023 0.92820 0.92083 0.92072 0.92091 0.90919 0.91708 0.91051 0.91854 0.91810 0.91678 0.91544 0.91125 0.91187 0.89118 0.89099 0.95647 0.95648 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.10 5.69 -26.73 -0.15 -1.25 16 3 C -0.12 -1.31 4.61 -26.73 -0.12 -1.44 16 4 C -0.08 -0.88 1.93 -90.62 -0.18 -1.06 16 5 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.11 -1.01 4.96 -26.74 -0.13 -1.14 16 7 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 8 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 9 C -0.14 -1.72 5.56 -26.73 -0.15 -1.87 16 10 C 0.09 1.29 1.88 -26.73 -0.05 1.24 16 11 H 0.08 1.29 7.16 -51.93 -0.37 0.92 16 12 O -0.36 -6.06 9.12 -39.25 -0.36 -6.42 16 13 C 0.46 9.17 7.93 36.01 0.29 9.45 16 14 O -0.51 -11.72 15.20 -18.74 -0.28 -12.01 16 15 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 16 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -31.40 349.57 -8.96 -40.36 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.17 Total: -2.52 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.13 Total: -14.75 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.64 Total: -18.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.40 -8.96 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.931 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds