Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53008 * 109.46774 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46995 * 60.00238 * 7 6 4 9 9 C 1.53000 * 109.47320 * 299.99845 * 8 7 6 10 10 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 11 11 H 1.08994 * 109.47359 * 299.99610 * 10 4 3 12 12 O 1.45199 * 109.47143 * 60.00025 * 10 4 3 13 13 C 1.34230 * 117.00056 * 209.99556 * 12 10 4 14 14 O 1.20825 * 119.99836 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00217 * 179.97438 * 13 12 10 16 16 C 1.53003 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47125 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00200 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99894 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47429 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47406 * 120.00294 * 21 19 17 24 24 H 1.48503 * 109.47293 * 240.00131 * 21 19 17 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 33 33 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 34 34 H 1.08998 * 109.46504 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47044 * 300.00132 * 7 6 4 36 36 H 1.09000 * 109.46863 * 59.99768 * 8 7 6 37 37 H 1.08996 * 109.46657 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47427 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46578 * 300.00351 * 9 8 7 40 40 H 1.08997 * 109.47512 * 300.00531 * 15 13 12 41 41 H 1.09006 * 109.47172 * 60.00626 * 15 13 12 42 42 H 1.08997 * 109.47243 * 300.00587 * 16 15 13 43 43 H 1.09002 * 109.46825 * 60.00669 * 16 15 13 44 44 H 0.96998 * 120.00347 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 5.6105 0.8330 1.3061 8 6 6.1200 2.2702 1.1806 9 6 5.6095 2.8801 -0.1264 10 6 4.0800 2.8794 -0.1264 11 1 3.7164 3.3138 -1.0575 12 8 3.5965 3.6644 0.9953 13 6 3.3934 4.9737 0.7803 14 8 3.6119 5.4480 -0.3093 15 6 2.8917 5.8519 1.8974 16 6 2.7465 7.2884 1.3910 17 6 2.2454 8.1667 2.5084 18 1 2.0504 7.7429 3.4824 19 6 2.0359 9.5114 2.2872 20 7 2.2728 10.0274 1.1010 21 14 1.4155 10.6002 3.6724 22 1 1.2288 9.7834 4.8984 23 1 2.4059 11.6740 3.9396 24 1 0.1189 11.2091 3.2806 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7175 1.4219 2.1485 33 1 3.7171 -0.1912 1.3961 34 1 5.9741 0.3990 2.2375 35 1 5.9738 0.2439 0.4640 36 1 5.7567 2.8593 2.0227 37 1 7.2100 2.2706 1.1808 38 1 5.9721 3.9041 -0.2156 39 1 5.9729 2.2909 -0.9684 40 1 1.9227 5.4877 2.2388 41 1 3.6009 5.8279 2.7249 42 1 3.7153 7.6528 1.0494 43 1 2.0370 7.3120 0.5638 44 1 2.1258 10.9735 0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851453491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -141.674238 kcal Electronic energy + Delta-G solvation = -21199.344278 eV Core-core repulsion = 18114.611575 eV Total energy + Delta-G solvation = -3084.732703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41150 -38.38043 -35.55015 -34.85974 -33.55787 -31.23394 -30.94090 -30.20317 -26.36580 -25.75136 -23.21413 -22.43013 -21.84446 -20.64586 -20.13954 -19.01376 -17.21341 -16.15019 -16.01089 -15.79887 -15.26050 -14.93985 -14.45729 -14.19973 -14.13065 -13.47001 -13.34932 -13.08508 -12.84372 -12.43627 -12.33670 -12.16541 -11.93417 -11.70681 -11.40098 -11.19466 -11.17269 -11.03085 -10.96817 -10.75160 -10.66154 -10.60194 -10.53617 -10.05126 -9.97886 -9.87629 -9.72957 -9.48374 -9.14506 -8.37127 -6.00670 -4.05340 2.91033 3.22033 3.31186 3.38785 3.42600 4.44568 4.45581 4.61028 4.68683 4.91087 4.96270 5.06330 5.13582 5.19607 5.30614 5.34877 5.38782 5.41079 5.49922 5.56298 5.63403 5.71070 5.77371 5.79319 5.88082 5.94067 5.98703 6.06260 6.11903 6.14327 6.15962 6.20621 6.23139 6.28886 6.32463 6.46423 6.73318 7.04948 7.68238 7.75478 7.99460 8.29738 8.49108 9.02172 9.58727 11.10430 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.004051 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.413967 B = 6910.720222 C = 7575.983749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.079 4.079 5 H 0.082 0.918 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.135 4.135 10 C 0.091 3.909 11 H 0.080 0.920 12 O -0.353 6.353 13 C 0.454 3.546 14 O -0.508 6.508 15 C -0.104 4.104 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -21.697 -0.994 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.098 4.098 5 H 0.100 0.900 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.173 4.173 10 C 0.036 3.964 11 H 0.098 0.902 12 O -0.271 6.271 13 C 0.298 3.702 14 O -0.395 6.395 15 C -0.141 4.141 16 C -0.004 4.004 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.285 -21.411 -1.445 21.710 hybrid contribution -0.250 0.752 0.441 0.907 sum 3.035 -20.659 -1.004 20.905 Atomic orbital electron populations 1.21780 0.96002 1.01271 1.02057 1.21560 0.95773 0.96934 1.01770 1.21659 0.94259 0.96752 1.02907 1.21285 0.95813 0.93632 0.99050 0.89990 1.21597 0.95175 1.00498 0.97808 1.21533 0.95896 0.96719 1.01361 1.21474 0.99740 0.96173 0.98121 1.21921 0.94741 1.02028 0.98600 1.22593 0.93692 0.90494 0.89606 0.90174 1.86604 1.77275 1.21975 1.41275 1.24717 0.73817 0.80837 0.90837 1.90614 1.47831 1.74284 1.26737 1.21731 1.01598 0.96420 0.94368 1.19008 0.98478 0.86176 0.96734 1.21203 1.44893 0.93376 0.97069 0.92298 1.25018 0.95508 0.98159 0.95633 1.70001 1.48460 1.12969 1.21379 0.86501 0.78492 0.80554 0.82236 1.19646 1.20973 1.20967 0.93041 0.92577 0.92809 0.92382 0.91803 0.90938 0.92103 0.90822 0.91939 0.92093 0.92409 0.91117 0.92239 0.91218 0.90834 0.89166 0.89168 0.95667 0.95656 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.15 0.37 -0.97 16 2 C -0.12 -1.09 5.69 -26.74 -0.15 -1.24 16 3 C -0.12 -1.28 4.47 -26.73 -0.12 -1.40 16 4 C -0.08 -0.85 2.02 -90.62 -0.18 -1.03 16 5 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.11 -1.12 4.82 -26.72 -0.13 -1.25 16 7 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 8 C -0.12 -1.30 5.78 -26.73 -0.15 -1.46 16 9 C -0.14 -1.69 5.64 -26.75 -0.15 -1.84 16 10 C 0.09 1.25 2.18 -26.75 -0.06 1.20 16 11 H 0.08 1.23 7.16 -51.93 -0.37 0.86 16 12 O -0.35 -5.73 7.96 -39.26 -0.31 -6.04 16 13 C 0.45 9.00 7.93 36.00 0.29 9.28 16 14 O -0.51 -11.65 15.20 -18.75 -0.28 -11.93 16 15 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 16 C 0.03 0.88 4.26 -27.88 -0.12 0.77 16 17 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 33 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -31.26 347.82 -8.92 -40.18 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.14 Total: -2.45 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.14 Total: -15.07 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.60 Total: -17.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.26 -8.92 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.499 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds