Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53008 * 109.46774 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46995 * 60.00238 * 7 6 4 9 9 C 1.53000 * 109.47320 * 299.99845 * 8 7 6 10 10 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 11 11 H 1.08994 * 109.47359 * 299.99610 * 10 4 3 12 12 O 1.45199 * 109.47143 * 60.00025 * 10 4 3 13 13 C 1.34230 * 117.00056 * 209.99556 * 12 10 4 14 14 O 1.20825 * 119.99836 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00217 * 179.97438 * 13 12 10 16 16 C 1.53003 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47125 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00200 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99894 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47429 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47406 * 120.00294 * 21 19 17 24 24 H 1.48503 * 109.47293 * 240.00131 * 21 19 17 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 33 33 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 34 34 H 1.08998 * 109.46504 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47044 * 300.00132 * 7 6 4 36 36 H 1.09000 * 109.46863 * 59.99768 * 8 7 6 37 37 H 1.08996 * 109.46657 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47427 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46578 * 300.00351 * 9 8 7 40 40 H 1.08997 * 109.47512 * 300.00531 * 15 13 12 41 41 H 1.09006 * 109.47172 * 60.00626 * 15 13 12 42 42 H 1.08997 * 109.47243 * 300.00587 * 16 15 13 43 43 H 1.09002 * 109.46825 * 60.00669 * 16 15 13 44 44 H 0.96998 * 120.00347 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 5.6105 0.8330 1.3061 8 6 6.1200 2.2702 1.1806 9 6 5.6095 2.8801 -0.1264 10 6 4.0800 2.8794 -0.1264 11 1 3.7164 3.3138 -1.0575 12 8 3.5965 3.6644 0.9953 13 6 3.3934 4.9737 0.7803 14 8 3.6119 5.4480 -0.3093 15 6 2.8917 5.8519 1.8974 16 6 2.7465 7.2884 1.3910 17 6 2.2454 8.1667 2.5084 18 1 2.0504 7.7429 3.4824 19 6 2.0359 9.5114 2.2872 20 7 2.2728 10.0274 1.1010 21 14 1.4155 10.6002 3.6724 22 1 1.2288 9.7834 4.8984 23 1 2.4059 11.6740 3.9396 24 1 0.1189 11.2091 3.2806 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7175 1.4219 2.1485 33 1 3.7171 -0.1912 1.3961 34 1 5.9741 0.3990 2.2375 35 1 5.9738 0.2439 0.4640 36 1 5.7567 2.8593 2.0227 37 1 7.2100 2.2706 1.1808 38 1 5.9721 3.9041 -0.2156 39 1 5.9729 2.2909 -0.9684 40 1 1.9227 5.4877 2.2388 41 1 3.6009 5.8279 2.7249 42 1 3.7153 7.6528 1.0494 43 1 2.0370 7.3120 0.5638 44 1 2.1258 10.9735 0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851453491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = -157.131244 kcal Electronic energy + Delta-G solvation = -21200.014544 eV Core-core repulsion = 18114.611575 eV Total energy + Delta-G solvation = -3085.402969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79223 -39.60577 -36.91228 -35.71729 -35.65616 -33.18215 -31.78434 -31.25921 -28.11515 -26.89084 -24.61968 -23.71234 -22.79763 -21.82980 -21.37350 -20.26961 -18.99518 -17.97011 -17.40539 -17.10801 -16.47594 -16.17312 -16.07673 -15.40270 -15.07499 -14.59427 -14.49345 -14.30541 -14.14936 -13.94198 -13.58011 -13.30465 -13.14271 -13.01571 -12.86235 -12.64589 -12.48358 -12.20330 -12.03801 -11.97377 -11.95148 -11.82267 -11.75031 -11.48412 -11.40368 -11.38291 -11.22569 -10.88629 -10.71059 -10.60004 -8.21291 -6.35342 1.28220 1.42404 1.43546 1.57082 1.80166 2.42458 3.12538 3.52893 3.68106 3.77837 3.89545 4.08635 4.16357 4.22910 4.32494 4.39550 4.40293 4.42382 4.48568 4.53547 4.54663 4.72007 4.75415 4.85112 4.90156 4.97555 4.98819 5.08390 5.09723 5.19986 5.25974 5.27570 5.34286 5.36894 5.43833 5.45558 5.52029 5.52996 5.55637 5.62624 5.79061 6.12010 6.80667 6.90149 7.35118 8.91732 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.004051 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.413967 B = 6910.720222 C = 7575.983749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.072 4.072 5 H 0.105 0.895 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.135 4.135 10 C 0.083 3.917 11 H 0.058 0.942 12 O -0.341 6.341 13 C 0.462 3.538 14 O -0.547 6.547 15 C -0.095 4.095 16 C 0.040 3.960 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.112 0.888 42 H -0.012 1.012 43 H -0.012 1.012 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -24.075 0.696 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.091 4.091 5 H 0.123 0.877 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.172 4.172 10 C 0.028 3.972 11 H 0.076 0.924 12 O -0.258 6.258 13 C 0.308 3.692 14 O -0.438 6.438 15 C -0.132 4.132 16 C 0.003 3.997 17 C -0.581 4.581 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.352 -23.831 0.267 24.067 hybrid contribution -0.244 1.439 -0.157 1.468 sum 3.108 -22.392 0.110 22.607 Atomic orbital electron populations 1.21800 0.96098 1.02020 1.01411 1.21523 0.95685 0.95275 1.02900 1.21647 0.94500 0.98151 1.01313 1.21331 0.95582 0.91373 1.00771 0.87653 1.21597 0.95722 1.01305 0.96200 1.21526 0.95225 0.95350 1.02902 1.21482 1.00569 0.97215 0.96167 1.21943 0.93553 1.01010 1.00700 1.22975 0.94860 0.91731 0.87646 0.92381 1.86569 1.76729 1.20134 1.42326 1.24439 0.73067 0.81940 0.89801 1.90604 1.49698 1.75307 1.28154 1.21482 1.03568 0.93235 0.94913 1.18778 0.95308 0.90018 0.95625 1.21667 1.44576 0.93996 0.97907 0.90513 1.26103 0.95532 1.00052 0.98451 1.70165 1.49790 1.13548 1.24097 0.85256 0.77702 0.78230 0.78969 1.17678 1.20537 1.20529 0.91571 0.93309 0.93460 0.91101 0.90665 0.92773 0.93570 0.92580 0.89629 0.90734 0.90572 0.93140 0.90922 0.94144 0.88344 0.86972 0.86980 0.99362 0.99354 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.12 -1.78 5.69 30.59 0.17 -1.61 16 3 C -0.12 -2.46 4.47 30.59 0.14 -2.33 16 4 C -0.07 -1.42 2.02 -10.79 -0.02 -1.44 16 5 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 6 C -0.11 -1.88 4.82 30.60 0.15 -1.73 16 7 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 8 C -0.12 -2.40 5.78 30.60 0.18 -2.22 16 9 C -0.13 -3.28 5.64 30.58 0.17 -3.11 16 10 C 0.08 2.26 2.18 30.58 0.07 2.33 16 11 H 0.06 1.86 7.16 -2.39 -0.02 1.84 16 12 O -0.34 -11.19 7.96 -51.42 -0.41 -11.60 16 13 C 0.46 18.97 7.93 71.23 0.56 19.53 16 14 O -0.55 -26.62 15.20 21.97 0.33 -26.29 16 15 C -0.09 -3.97 5.75 29.85 0.17 -3.80 16 16 C 0.04 2.22 4.26 29.85 0.13 2.35 16 17 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -58.93 13.29 21.45 0.28 -58.65 16 21 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 22 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.00 6.57 -2.39 -0.02 0.99 16 30 H 0.05 1.31 7.83 -2.39 -0.02 1.29 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 33 H 0.09 1.10 6.57 -2.39 -0.02 1.09 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 41 H 0.11 4.22 8.14 -2.38 -0.02 4.20 16 42 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 43 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -70.51 347.82 6.47 -64.03 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.93 Total: 12.08 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.31 Total: -25.77 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.28 Total: -58.65 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.08 Total: -37.89 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.51 6.47 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.097 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds