Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 C 1.53006 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46765 * 304.99460 * 4 3 2 6 6 C 1.52999 * 109.47000 * 65.00045 * 4 3 2 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 4 9 9 C 1.53002 * 109.46817 * 60.00361 * 8 7 6 10 10 C 1.52996 * 109.46972 * 299.99733 * 9 8 7 11 11 H 1.09001 * 109.46993 * 180.02562 * 10 9 8 12 12 O 1.45202 * 109.47244 * 299.99830 * 10 9 8 13 13 C 1.34225 * 117.00150 * 270.00062 * 12 10 9 14 14 O 1.20816 * 120.00589 * 0.02562 * 13 12 10 15 15 C 1.50703 * 119.99628 * 180.02562 * 13 12 10 16 16 C 1.53007 * 109.46907 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46907 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99827 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99630 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99545 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47410 * 89.99995 * 21 19 17 23 23 H 1.48506 * 109.46926 * 209.99734 * 21 19 17 24 24 H 1.48501 * 109.47545 * 329.99630 * 21 19 17 25 25 H 1.09009 * 109.47251 * 299.99692 * 1 2 3 26 26 H 1.08993 * 109.47460 * 60.00187 * 1 2 3 27 27 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 239.99702 * 2 1 3 29 29 H 1.09000 * 109.47315 * 120.00137 * 2 1 3 30 30 H 1.08997 * 109.47474 * 60.00041 * 3 2 1 31 31 H 1.09006 * 109.46822 * 299.99927 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 6 4 3 33 33 H 1.09000 * 109.47160 * 299.99635 * 6 4 3 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 6 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.08996 * 109.47407 * 60.00219 * 9 8 7 39 39 H 1.09000 * 109.46986 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47318 * 300.00016 * 15 13 12 41 41 H 1.09000 * 109.47589 * 60.00375 * 15 13 12 42 42 H 1.08998 * 109.46577 * 299.99633 * 16 15 13 43 43 H 1.09002 * 109.47368 * 60.00021 * 16 15 13 44 44 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8409 6 6 4.0794 0.8330 -1.3083 7 6 5.6095 0.8324 -1.3086 8 6 6.1200 2.2692 -1.1826 9 6 5.6105 2.8786 0.1250 10 6 4.0806 2.8792 0.1253 11 1 3.7176 3.3138 1.0567 12 8 3.5966 3.6649 -0.9957 13 6 3.3940 4.9742 -0.7799 14 8 3.6142 5.4481 0.3094 15 6 2.8919 5.8529 -1.8965 16 6 2.7487 7.2895 -1.3897 17 6 2.2460 8.1682 -2.5062 18 1 2.0488 7.7445 -3.4798 19 6 2.0377 9.5130 -2.2845 20 7 2.2773 10.0288 -1.0987 21 14 1.4140 10.6020 -3.6681 22 1 -0.0708 10.6230 -3.6505 23 1 1.9307 11.9819 -3.4832 24 1 1.8861 10.0670 -4.9704 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.7158 1.4225 -2.1499 33 1 3.7161 -0.1908 -1.3978 34 1 5.9727 0.2426 -0.4670 35 1 5.9724 0.3978 -2.2400 36 1 7.2101 2.2688 -1.1833 37 1 5.7567 2.8589 -2.0242 38 1 5.9738 2.2889 0.9666 39 1 5.9746 3.9020 0.2150 40 1 3.6006 5.8291 -2.7244 41 1 1.9226 5.4892 -2.2374 42 1 2.0402 7.3137 -0.5618 43 1 3.7182 7.6531 -1.0492 44 1 2.1305 10.9749 -0.9426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851453492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = -157.083025 kcal Electronic energy + Delta-G solvation = -21199.223540 eV Core-core repulsion = 18113.822662 eV Total energy + Delta-G solvation = -3085.400878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79180 -39.60606 -36.91324 -35.71691 -35.65507 -33.18101 -31.78402 -31.25768 -28.11349 -26.89074 -24.61871 -23.71172 -22.79747 -21.82974 -21.37372 -20.27068 -18.99388 -17.96751 -17.40579 -17.10750 -16.47859 -16.17234 -16.07720 -15.40218 -15.07408 -14.59312 -14.49356 -14.29955 -14.14928 -13.94159 -13.58180 -13.30580 -13.14369 -13.01637 -12.83362 -12.64496 -12.51015 -12.20413 -12.02992 -11.97256 -11.95135 -11.82181 -11.75159 -11.48458 -11.41360 -11.38369 -11.23627 -10.88675 -10.71001 -10.58960 -8.21073 -6.35260 1.28257 1.42348 1.44954 1.55985 1.80124 2.42595 3.12644 3.52872 3.68042 3.77789 3.89501 4.08626 4.16372 4.22900 4.32488 4.39551 4.40268 4.42413 4.48537 4.53470 4.54612 4.72007 4.75386 4.85101 4.90139 4.97545 4.98810 5.08376 5.09690 5.19958 5.25960 5.27572 5.34239 5.36853 5.43665 5.45534 5.52022 5.53040 5.55589 5.62624 5.78997 6.12033 6.80518 6.90156 7.35186 8.91715 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.004050 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.467430 B = 6911.436717 C = 7576.998509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.072 4.072 5 H 0.105 0.895 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.134 4.134 10 C 0.083 3.917 11 H 0.058 0.942 12 O -0.341 6.341 13 C 0.462 3.538 14 O -0.547 6.547 15 C -0.095 4.095 16 C 0.040 3.960 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.256 1.256 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.112 0.888 41 H 0.112 0.888 42 H -0.012 1.012 43 H -0.012 1.012 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -24.063 -0.705 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.091 4.091 5 H 0.123 0.877 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.172 4.172 10 C 0.028 3.972 11 H 0.076 0.924 12 O -0.258 6.258 13 C 0.308 3.692 14 O -0.438 6.438 15 C -0.132 4.132 16 C 0.003 3.997 17 C -0.583 4.583 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.342 -23.815 -0.275 24.050 hybrid contribution -0.255 1.426 0.153 1.457 sum 3.086 -22.389 -0.123 22.601 Atomic orbital electron populations 1.21802 0.96097 1.02020 1.01411 1.21524 0.95685 0.95274 1.02900 1.21648 0.94498 0.98153 1.01314 1.21330 0.95584 0.91376 1.00765 0.87658 1.21594 0.95726 1.01307 0.96195 1.21525 0.95221 0.95351 1.02908 1.21481 1.00570 0.97217 0.96162 1.21949 0.93544 1.01019 1.00692 1.22982 0.94857 0.91716 0.87657 0.92384 1.86568 1.76716 1.20125 1.42348 1.24438 0.73080 0.81944 0.89785 1.90602 1.49678 1.75321 1.28156 1.21485 1.03568 0.93223 0.94923 1.18773 0.95299 0.90012 0.95614 1.21638 1.44638 0.93997 0.97986 0.90516 1.26103 0.95514 1.00038 0.98454 1.70163 1.49677 1.13600 1.24151 0.85306 0.78571 0.77248 0.79049 1.19645 1.21073 1.17946 0.93459 0.93308 0.91572 0.90664 0.91101 0.93562 0.92777 0.92574 0.89634 0.90576 0.90733 0.90922 0.93142 0.88344 0.94144 0.86992 0.86962 0.99374 0.99359 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.12 -1.78 5.69 30.59 0.17 -1.61 16 3 C -0.12 -2.46 4.47 30.60 0.14 -2.33 16 4 C -0.07 -1.42 2.02 -10.79 -0.02 -1.44 16 5 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 6 C -0.11 -1.88 4.82 30.60 0.15 -1.73 16 7 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 8 C -0.12 -2.40 5.78 30.59 0.18 -2.22 16 9 C -0.13 -3.28 5.65 30.59 0.17 -3.11 16 10 C 0.08 2.27 2.18 30.59 0.07 2.33 16 11 H 0.06 1.86 7.15 -2.39 -0.02 1.84 16 12 O -0.34 -11.19 7.97 -51.37 -0.41 -11.60 16 13 C 0.46 18.97 7.93 71.24 0.56 19.54 16 14 O -0.55 -26.63 15.20 21.99 0.33 -26.29 16 15 C -0.09 -3.97 5.75 29.85 0.17 -3.80 16 16 C 0.04 2.24 4.26 29.85 0.13 2.37 16 17 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 20 N -0.94 -58.96 13.29 21.45 0.28 -58.68 16 21 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.00 6.56 -2.39 -0.02 0.99 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.31 7.83 -2.38 -0.02 1.29 16 32 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 33 H 0.09 1.10 6.56 -2.39 -0.02 1.09 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 4.22 8.14 -2.38 -0.02 4.20 16 41 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 42 H -0.01 -0.76 8.10 -2.39 -0.02 -0.78 16 43 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 44 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -70.49 347.83 6.48 -64.02 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.93 Total: 12.19 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.31 Total: -25.80 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.08 Total: -37.89 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.49 6.48 -64.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.064 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds