Wall clock time and date at job start Mon Mar 30 2020 00:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46865 * 304.99740 * 4 3 2 6 6 C 1.52999 * 109.47214 * 64.99896 * 4 3 2 7 7 C 1.53003 * 109.47214 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46996 * 300.00324 * 7 6 4 9 9 C 1.52999 * 109.47403 * 59.99792 * 8 7 6 10 10 C 1.53002 * 109.46996 * 185.00219 * 4 3 2 11 11 H 1.09000 * 109.46922 * 299.99486 * 10 4 3 12 12 O 1.45192 * 109.47290 * 59.99943 * 10 4 3 13 13 C 1.34230 * 117.00018 * 210.00263 * 12 10 4 14 14 O 1.20826 * 120.00015 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00046 * 180.02562 * 13 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.09000 * 109.46692 * 60.00186 * 1 2 3 26 26 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47238 * 300.00370 * 1 2 3 28 28 H 1.09003 * 109.46950 * 240.00019 * 2 1 3 29 29 H 1.09000 * 109.47205 * 119.99700 * 2 1 3 30 30 H 1.09003 * 109.47318 * 60.00244 * 3 2 1 31 31 H 1.09000 * 109.47310 * 299.99435 * 3 2 1 32 32 H 1.09003 * 109.46850 * 60.00305 * 6 4 3 33 33 H 1.08998 * 109.46908 * 300.00054 * 6 4 3 34 34 H 1.08998 * 109.47396 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46865 * 59.99845 * 7 6 4 36 36 H 1.09000 * 109.46922 * 299.99486 * 8 7 6 37 37 H 1.08997 * 109.47197 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.46908 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.46850 * 59.99770 * 9 8 7 40 40 H 1.09002 * 109.47060 * 299.99765 * 15 13 12 41 41 H 1.09001 * 109.47380 * 59.99853 * 15 13 12 42 42 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 43 43 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 5.6095 0.8337 -1.3092 8 6 6.1190 2.2709 -1.1837 9 6 5.6095 2.8804 0.1239 10 6 4.0800 2.8796 0.1251 11 1 3.7164 3.4691 -0.7165 12 8 3.5966 3.4579 1.3661 13 6 3.3934 4.7846 1.3816 14 8 3.6127 5.4410 0.3912 15 6 2.8928 5.4556 2.6347 16 6 2.7485 6.9583 2.3858 17 6 2.2474 7.6292 3.6386 18 1 2.0517 7.0426 4.5240 19 6 2.0395 8.9922 3.6549 20 7 1.6026 9.5778 4.7484 21 14 2.3799 10.0072 2.1241 22 1 1.1501 10.0799 1.2948 23 1 2.7914 11.3779 2.5203 24 1 3.4686 9.3706 1.3400 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7158 1.4227 -2.1498 33 1 3.7161 -0.1906 -1.3978 34 1 5.9725 0.3999 -2.2409 35 1 5.9735 0.2444 -0.4676 36 1 5.7550 2.8602 -2.0254 37 1 7.2090 2.2714 -1.1848 38 1 5.9722 3.9044 0.2130 39 1 5.9736 2.2910 0.9655 40 1 1.9240 5.0377 2.9085 41 1 3.6027 5.2884 3.4448 42 1 3.7175 7.3760 2.1122 43 1 2.0389 7.1259 1.5756 44 1 1.4561 10.5365 4.7597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851453493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:24 Heat of formation + Delta-G solvation = -140.211779 kcal Electronic energy + Delta-G solvation = -21062.698081 eV Core-core repulsion = 17978.028795 eV Total energy + Delta-G solvation = -3084.669286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46121 -38.59757 -35.82710 -35.04593 -33.60125 -31.46907 -31.03910 -30.23059 -26.66679 -25.96401 -23.35797 -22.40875 -21.33614 -20.69830 -20.12091 -19.62247 -17.51933 -16.76581 -15.92945 -15.85783 -15.41960 -14.84785 -14.38085 -14.21910 -14.05843 -13.66095 -13.51286 -13.29838 -13.00785 -12.74280 -12.51901 -12.46633 -11.95337 -11.60994 -11.51506 -11.31232 -11.29308 -11.12217 -11.02318 -10.92995 -10.82497 -10.56225 -10.37997 -10.27163 -10.15001 -9.90260 -9.83635 -9.61975 -9.24897 -8.55110 -6.06712 -4.06415 2.74721 3.05821 3.34534 3.41451 3.50839 4.35529 4.46736 4.47721 4.63382 4.78522 4.88504 4.98273 5.01895 5.09508 5.15029 5.26071 5.28127 5.28380 5.39729 5.44173 5.55276 5.61271 5.70557 5.74119 5.81538 5.85841 5.87563 5.92725 5.94574 6.01671 6.04332 6.06669 6.09704 6.14705 6.26295 6.28880 6.55199 6.89695 7.25275 7.32493 7.71913 8.27761 8.48242 8.95814 9.55263 11.05940 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.004180 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.834389 B = 6696.833899 C = 7526.405727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.081 4.081 5 H 0.080 0.920 6 C -0.113 4.113 7 C -0.122 4.122 8 C -0.116 4.116 9 C -0.136 4.136 10 C 0.091 3.909 11 H 0.081 0.919 12 O -0.357 6.357 13 C 0.456 3.544 14 O -0.512 6.512 15 C -0.096 4.096 16 C -0.002 4.002 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -21.125 -11.997 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.099 4.099 5 H 0.099 0.901 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.153 4.153 9 C -0.174 4.174 10 C 0.036 3.964 11 H 0.099 0.901 12 O -0.274 6.274 13 C 0.300 3.700 14 O -0.400 6.400 15 C -0.134 4.134 16 C -0.039 4.039 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.186 1.186 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.994 -20.770 -12.242 24.621 hybrid contribution 0.172 0.749 -0.806 1.114 sum 5.166 -20.020 -13.048 24.449 Atomic orbital electron populations 1.21783 0.95957 1.01337 1.02053 1.21555 0.95813 0.96816 1.01805 1.21668 0.94166 0.96971 1.02836 1.21244 0.95879 0.94034 0.98765 0.90137 1.21632 0.95447 1.01139 0.96852 1.21592 0.95640 0.96842 1.01886 1.21482 1.00500 0.96029 0.97317 1.21924 0.94697 1.02104 0.98631 1.22644 0.93705 0.93844 0.86184 0.90064 1.86597 1.77231 1.24818 1.38798 1.24699 0.73660 0.79985 0.91621 1.90599 1.48162 1.64791 1.36415 1.21527 1.02426 0.98055 0.91377 1.19469 0.97872 0.88612 0.97956 1.21040 1.44777 0.93111 0.97518 0.90666 1.24950 0.94285 0.97802 0.96028 1.69904 1.45961 1.10661 1.27401 0.86812 0.79625 0.79431 0.83777 1.20165 1.21310 1.18613 0.92853 0.92985 0.92516 0.92070 0.92034 0.90894 0.92124 0.91738 0.90976 0.91818 0.91747 0.91730 0.91506 0.91232 0.91020 0.88467 0.88429 0.95663 0.96109 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.05 5.69 -26.73 -0.15 -1.21 16 3 C -0.12 -1.26 4.61 -26.73 -0.12 -1.38 16 4 C -0.08 -0.84 1.94 -90.62 -0.18 -1.02 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.11 -0.95 4.96 -26.73 -0.13 -1.09 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 9 C -0.14 -1.63 5.56 -26.76 -0.15 -1.78 16 10 C 0.09 1.22 1.88 -26.76 -0.05 1.17 16 11 H 0.08 1.21 7.16 -51.93 -0.37 0.84 16 12 O -0.36 -5.72 9.12 -39.26 -0.36 -6.07 16 13 C 0.46 8.66 7.93 36.01 0.29 8.94 16 14 O -0.51 -11.07 15.20 -18.75 -0.29 -11.35 16 15 C -0.10 -1.92 5.75 -27.88 -0.16 -2.08 16 16 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 17 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 21 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 43 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -31.44 345.96 -8.59 -40.03 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.13 Total: -3.29 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.13 Total: -15.21 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.97 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.64 Total: -17.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.44 -8.59 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.186 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds