Wall clock time and date at job start Mon Mar 30 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46865 * 304.99740 * 4 3 2 6 6 C 1.52999 * 109.47214 * 64.99896 * 4 3 2 7 7 C 1.53003 * 109.47214 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46996 * 300.00324 * 7 6 4 9 9 C 1.52999 * 109.47403 * 59.99792 * 8 7 6 10 10 C 1.53002 * 109.46996 * 185.00219 * 4 3 2 11 11 H 1.09000 * 109.46922 * 299.99486 * 10 4 3 12 12 O 1.45192 * 109.47290 * 59.99943 * 10 4 3 13 13 C 1.34230 * 117.00018 * 210.00263 * 12 10 4 14 14 O 1.20826 * 120.00015 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00046 * 180.02562 * 13 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.09000 * 109.46692 * 60.00186 * 1 2 3 26 26 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47238 * 300.00370 * 1 2 3 28 28 H 1.09003 * 109.46950 * 240.00019 * 2 1 3 29 29 H 1.09000 * 109.47205 * 119.99700 * 2 1 3 30 30 H 1.09003 * 109.47318 * 60.00244 * 3 2 1 31 31 H 1.09000 * 109.47310 * 299.99435 * 3 2 1 32 32 H 1.09003 * 109.46850 * 60.00305 * 6 4 3 33 33 H 1.08998 * 109.46908 * 300.00054 * 6 4 3 34 34 H 1.08998 * 109.47396 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46865 * 59.99845 * 7 6 4 36 36 H 1.09000 * 109.46922 * 299.99486 * 8 7 6 37 37 H 1.08997 * 109.47197 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.46908 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.46850 * 59.99770 * 9 8 7 40 40 H 1.09002 * 109.47060 * 299.99765 * 15 13 12 41 41 H 1.09001 * 109.47380 * 59.99853 * 15 13 12 42 42 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 43 43 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 5.6095 0.8337 -1.3092 8 6 6.1190 2.2709 -1.1837 9 6 5.6095 2.8804 0.1239 10 6 4.0800 2.8796 0.1251 11 1 3.7164 3.4691 -0.7165 12 8 3.5966 3.4579 1.3661 13 6 3.3934 4.7846 1.3816 14 8 3.6127 5.4410 0.3912 15 6 2.8928 5.4556 2.6347 16 6 2.7485 6.9583 2.3858 17 6 2.2474 7.6292 3.6386 18 1 2.0517 7.0426 4.5240 19 6 2.0395 8.9922 3.6549 20 7 1.6026 9.5778 4.7484 21 14 2.3799 10.0072 2.1241 22 1 1.1501 10.0799 1.2948 23 1 2.7914 11.3779 2.5203 24 1 3.4686 9.3706 1.3400 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7158 1.4227 -2.1498 33 1 3.7161 -0.1906 -1.3978 34 1 5.9725 0.3999 -2.2409 35 1 5.9735 0.2444 -0.4676 36 1 5.7550 2.8602 -2.0254 37 1 7.2090 2.2714 -1.1848 38 1 5.9722 3.9044 0.2130 39 1 5.9736 2.2910 0.9655 40 1 1.9240 5.0377 2.9085 41 1 3.6027 5.2884 3.4448 42 1 3.7175 7.3760 2.1122 43 1 2.0389 7.1259 1.5756 44 1 1.4561 10.5365 4.7597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851453493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:23 Heat of formation + Delta-G solvation = -155.886426 kcal Electronic energy + Delta-G solvation = -21063.377785 eV Core-core repulsion = 17978.028795 eV Total energy + Delta-G solvation = -3085.348990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78411 -39.67955 -37.17584 -35.80823 -35.64474 -33.47256 -31.80816 -31.20177 -28.43918 -26.91844 -24.51638 -23.55520 -22.61190 -21.56982 -21.30417 -20.85065 -19.34774 -18.42172 -17.32236 -17.27692 -16.30602 -16.16982 -15.86334 -15.40737 -15.08101 -14.87990 -14.69249 -14.47623 -14.17618 -14.05991 -13.78646 -13.51815 -13.38315 -12.96924 -12.79826 -12.37947 -12.32472 -12.24537 -12.05206 -12.01541 -11.92689 -11.85192 -11.81693 -11.67013 -11.47336 -11.43087 -11.35162 -11.05512 -10.80844 -10.74180 -8.33626 -6.37915 1.21559 1.32443 1.34482 1.48346 1.71878 2.32823 3.01635 3.48092 3.63635 3.73205 3.87668 4.03242 4.15596 4.19407 4.22742 4.29742 4.35492 4.35871 4.41667 4.46795 4.51449 4.68111 4.73161 4.81115 4.85318 4.96255 4.98744 5.02514 5.06441 5.14960 5.18212 5.23528 5.26383 5.27269 5.33144 5.33637 5.40550 5.42158 5.51379 5.54559 5.61716 6.19673 6.67429 6.82062 7.27334 8.82019 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.004180 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.834389 B = 6696.833899 C = 7526.405727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.074 4.074 5 H 0.087 0.913 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.135 4.135 10 C 0.084 3.916 11 H 0.062 0.938 12 O -0.351 6.351 13 C 0.466 3.534 14 O -0.542 6.542 15 C -0.093 4.093 16 C 0.004 3.996 17 C -0.533 4.533 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.941 5.941 21 Si 0.938 3.062 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.260 1.260 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 -23.191 -13.583 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.092 4.092 5 H 0.106 0.894 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.173 4.173 10 C 0.029 3.971 11 H 0.081 0.919 12 O -0.268 6.268 13 C 0.312 3.688 14 O -0.432 6.432 15 C -0.130 4.130 16 C -0.034 4.034 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.182 4.182 20 N -0.582 5.582 21 Si 0.762 3.238 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.773 -22.866 -13.825 27.337 hybrid contribution -0.078 1.322 -0.262 1.350 sum 5.696 -21.544 -14.087 26.363 Atomic orbital electron populations 1.21801 0.96034 1.02036 1.01453 1.21525 0.95732 0.95321 1.02830 1.21656 0.94387 0.98242 1.01390 1.21275 0.95667 0.91879 1.00429 0.89449 1.21650 0.95941 1.01959 0.95148 1.21591 0.95037 0.95608 1.03300 1.21496 1.01294 0.96973 0.95318 1.21939 0.93522 1.01102 1.00697 1.23022 0.94822 0.95129 0.84097 0.91946 1.86562 1.76832 1.22980 1.40415 1.24309 0.73057 0.80844 0.90626 1.90588 1.49643 1.65694 1.37317 1.21332 1.03880 0.95331 0.92449 1.19301 0.96743 0.91565 0.95799 1.21332 1.44265 0.93324 0.98128 0.93055 1.25783 0.94235 0.99184 0.98957 1.70016 1.47370 1.11291 1.29479 0.85836 0.79734 0.78115 0.80094 1.19216 1.20231 1.18418 0.93050 0.91624 0.93591 0.90397 0.91533 0.93141 0.92851 0.92139 0.88828 0.89922 0.90835 0.92449 0.90189 0.93737 0.90093 0.87039 0.87020 0.96584 0.96718 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -1.75 5.69 30.60 0.17 -1.58 16 3 C -0.12 -2.39 4.61 30.60 0.14 -2.25 16 4 C -0.07 -1.41 1.94 -10.79 -0.02 -1.43 16 5 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.11 -1.53 4.96 30.60 0.15 -1.38 16 7 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 8 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 9 C -0.13 -3.12 5.56 30.58 0.17 -2.95 16 10 C 0.08 2.19 1.88 30.58 0.06 2.25 16 11 H 0.06 1.88 7.16 -2.39 -0.02 1.87 16 12 O -0.35 -11.12 9.12 -51.41 -0.47 -11.59 16 13 C 0.47 17.68 7.93 71.24 0.56 18.25 16 14 O -0.54 -23.63 15.20 21.97 0.33 -23.30 16 15 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 16 C 0.00 0.17 3.33 29.85 0.10 0.27 16 17 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 18 H 0.05 3.13 7.99 -2.91 -0.02 3.10 16 19 C 0.02 0.98 5.47 84.65 0.46 1.44 16 20 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 21 Si 0.94 46.16 27.47 68.60 1.88 48.04 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.26 -12.63 6.54 99.48 0.65 -11.97 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.93 6.56 -2.39 -0.02 0.91 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.22 7.53 -2.39 -0.02 1.21 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.96 6.56 -2.39 -0.02 0.94 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 41 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 42 H 0.02 0.81 7.15 -2.39 -0.02 0.80 16 43 H 0.01 0.73 7.53 -2.39 -0.02 0.72 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -67.84 345.96 6.22 -61.62 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.88 Total: 9.75 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.30 Total: -26.08 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.14 Total: -34.88 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -67.84 6.22 -61.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851453493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.266 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds