Wall clock time and date at job start Mon Mar 30 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47235 * 2 1 4 4 C 1.52999 * 109.46923 * 240.00630 * 2 1 3 5 5 C 1.52997 * 109.47224 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47553 * 180.02562 * 5 4 2 7 7 O 1.45201 * 109.47323 * 299.99921 * 5 4 2 8 8 C 1.34220 * 117.00003 * 270.00353 * 7 5 4 9 9 O 1.20825 * 120.00506 * 359.97438 * 8 7 5 10 10 C 1.50707 * 120.00174 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00403 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00213 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46956 * 270.00252 * 16 14 12 18 18 H 1.48497 * 109.46949 * 29.99746 * 16 14 12 19 19 H 1.48494 * 109.47357 * 150.00146 * 16 14 12 20 20 C 1.53000 * 109.47191 * 59.99998 * 5 4 2 21 21 C 1.52999 * 109.47038 * 300.00116 * 20 5 4 22 22 C 1.53000 * 109.47038 * 179.97438 * 21 20 5 23 23 C 1.52997 * 109.47152 * 300.00107 * 21 20 5 24 24 C 1.52997 * 109.47224 * 59.99905 * 21 20 5 25 25 H 1.09008 * 109.46976 * 299.99031 * 1 2 3 26 26 H 1.08999 * 109.47278 * 59.99157 * 1 2 3 27 27 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47176 * 59.99918 * 4 2 1 29 29 H 1.09003 * 109.47016 * 300.00127 * 4 2 1 30 30 H 1.09002 * 109.46683 * 59.99750 * 10 8 7 31 31 H 1.08996 * 109.47057 * 300.00034 * 10 8 7 32 32 H 1.08995 * 109.46742 * 60.00466 * 11 10 8 33 33 H 1.09003 * 109.46880 * 299.99761 * 11 10 8 34 34 H 0.97001 * 120.00068 * 0.02562 * 15 14 12 35 35 H 1.09003 * 109.46864 * 59.99776 * 20 5 4 36 36 H 1.08996 * 109.47113 * 179.97438 * 20 5 4 37 37 H 1.08999 * 109.47565 * 59.99678 * 22 21 20 38 38 H 1.09001 * 109.46910 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46864 * 299.99661 * 22 21 20 40 40 H 1.08997 * 109.47397 * 71.45735 * 23 21 20 41 41 H 1.09003 * 109.47170 * 191.46470 * 23 21 20 42 42 H 1.09005 * 109.46888 * 311.46227 * 23 21 20 43 43 H 1.09003 * 109.47399 * 59.99898 * 24 21 20 44 44 H 1.09001 * 109.47553 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 1 3.9333 -1.2339 -2.1400 7 8 4.0535 0.6485 -1.2499 8 6 4.2561 1.2230 -2.4459 9 8 4.0371 0.6024 -3.4592 10 6 4.7567 2.6423 -2.5250 11 6 4.9015 3.0511 -3.9923 12 6 5.4027 4.4700 -4.0713 13 1 5.5989 5.0248 -3.1657 14 6 5.6109 5.0602 -5.2999 15 7 5.3716 4.3849 -6.4028 16 14 6.2329 6.8189 -5.3978 17 1 5.0777 7.7518 -5.4232 18 1 7.0793 7.1113 -4.2133 19 1 7.0360 6.9918 -6.6349 20 6 4.0805 -1.4416 -0.0006 21 6 3.5706 -0.7205 1.2487 22 6 4.0806 -1.4419 2.4979 23 6 4.0800 0.7222 1.2485 24 6 2.0406 -0.7210 1.2491 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2072 -2.1393 29 1 1.6766 -1.7488 -1.2494 30 1 5.7257 2.7138 -2.0310 31 1 4.0472 3.3059 -2.0309 32 1 3.9327 2.9795 -4.4866 33 1 5.6113 2.3873 -4.4860 34 1 5.0483 3.4718 -6.3519 35 1 3.7175 -2.4694 -0.0005 36 1 5.1705 -1.4416 -0.0011 37 1 5.1706 -1.4420 2.4979 38 1 3.7169 -0.9284 3.3879 39 1 3.7172 -2.4696 2.4978 40 1 3.5593 1.2913 0.4785 41 1 3.8932 1.1736 2.2230 42 1 5.1507 0.7293 1.0440 43 1 1.6775 -1.7488 1.2493 44 1 1.6772 -0.2077 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857066680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:36 Heat of formation + Delta-G solvation = -133.938896 kcal Electronic energy + Delta-G solvation = -21673.360439 eV Core-core repulsion = 18588.963166 eV Total energy + Delta-G solvation = -3084.397274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73115 -38.92168 -35.81463 -34.16295 -33.87899 -31.54799 -30.66904 -27.34225 -26.71681 -26.47675 -25.58360 -22.84181 -21.61321 -20.72537 -19.80839 -18.60526 -17.29453 -16.36624 -16.23383 -15.79729 -15.18898 -14.75288 -14.20844 -14.00999 -13.72240 -13.52840 -13.40271 -12.91241 -12.72393 -12.49910 -12.32143 -12.10873 -11.99172 -11.87286 -11.72762 -11.52207 -11.50991 -11.02554 -10.89133 -10.84382 -10.47342 -10.36621 -10.19250 -10.16899 -10.03901 -10.03474 -9.87116 -9.63578 -8.60405 -8.32455 -6.36100 -4.06877 2.80733 3.13489 3.44360 3.48088 3.63736 4.45513 4.51252 4.54853 4.61119 4.86897 4.92046 5.09622 5.14303 5.25330 5.34936 5.41858 5.44062 5.48242 5.51151 5.59676 5.64098 5.66270 5.72579 5.83138 5.86648 5.87484 5.91267 6.02598 6.03651 6.06001 6.09863 6.19539 6.26710 6.33116 6.34912 6.56417 6.65567 6.99633 7.41750 7.46513 8.11963 8.36661 8.45787 8.86919 9.66758 11.04911 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028813 B = 0.004003 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.547134 B = 6992.746919 C = 7179.864437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.085 3.915 6 H 0.081 0.919 7 O -0.344 6.344 8 C 0.449 3.551 9 O -0.511 6.511 10 C -0.097 4.097 11 C 0.021 3.979 12 C -0.609 4.609 13 H 0.052 0.948 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 1.074 2.926 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.284 1.284 20 C -0.104 4.104 21 C -0.063 4.063 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.272 0.728 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 -11.927 18.015 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.030 3.970 6 H 0.099 0.901 7 O -0.262 6.262 8 C 0.293 3.707 9 O -0.398 6.398 10 C -0.135 4.135 11 C -0.016 4.016 12 C -0.647 4.647 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.546 5.546 16 Si 0.902 3.098 17 H -0.214 1.214 18 H -0.214 1.214 19 H -0.210 1.210 20 C -0.141 4.141 21 C -0.063 4.063 22 C -0.198 4.198 23 C -0.200 4.200 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.879 -10.955 16.659 20.787 hybrid contribution -0.494 -1.442 0.971 1.807 sum -6.373 -12.397 17.631 22.475 Atomic orbital electron populations 1.21828 0.95391 1.01474 1.01704 1.21168 0.95068 1.00777 0.94235 0.90001 1.21981 0.94417 1.01445 0.98786 1.22589 0.93980 0.81224 0.99173 0.90109 1.86874 1.77323 1.28800 1.33238 1.24797 0.73717 0.90911 0.81296 1.90601 1.47862 1.64770 1.36599 1.21580 1.01811 0.86442 1.03670 1.19116 0.97397 0.96898 0.88233 1.22008 1.49379 0.98196 0.95120 0.92968 1.25868 0.95177 1.05659 0.92101 1.70717 1.41786 1.12686 1.29399 0.83486 0.76526 0.74236 0.75586 1.21419 1.21416 1.20970 1.21762 1.01180 0.98271 0.92924 1.20506 0.95102 0.96520 0.94144 1.21872 1.00997 0.99805 0.97104 1.22107 1.01713 0.94935 1.01278 1.21640 0.94425 1.00196 0.97536 0.92731 0.92676 0.92974 0.91287 0.90758 0.89003 0.89032 0.96602 0.96601 0.91755 0.90438 0.91140 0.92675 0.92705 0.93030 0.89704 0.93827 0.92788 0.92296 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 2 C -0.09 -1.02 2.38 -90.62 -0.22 -1.24 16 3 H 0.08 1.02 5.94 -51.93 -0.31 0.71 16 4 C -0.13 -1.56 4.93 -26.73 -0.13 -1.70 16 5 C 0.09 1.14 2.75 -26.73 -0.07 1.07 16 6 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16 7 O -0.34 -5.40 5.65 -39.23 -0.22 -5.62 16 8 C 0.45 8.75 7.93 36.01 0.29 9.04 16 9 O -0.51 -11.54 15.20 -18.75 -0.28 -11.82 16 10 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.02 0.55 3.57 -27.88 -0.10 0.45 16 12 C -0.61 -17.39 9.11 -34.44 -0.31 -17.70 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 15 N -0.91 -28.56 13.65 55.43 0.76 -27.81 16 16 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.10 -1.10 4.59 -26.73 -0.12 -1.22 16 21 C -0.06 -0.62 0.77 -154.51 -0.12 -0.74 16 22 C -0.14 -1.17 8.45 37.16 0.31 -0.85 16 23 C -0.14 -1.62 7.11 37.16 0.26 -1.36 16 24 C -0.10 -0.94 4.01 -26.73 -0.11 -1.05 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 33 H 0.02 0.45 7.97 -51.93 -0.41 0.03 16 34 H 0.27 8.64 7.22 -40.82 -0.29 8.34 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 1.09 3.77 -51.93 -0.20 0.90 16 41 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 42 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.74 339.64 -7.91 -39.65 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.96 Total: -1.64 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.24 Total: -18.15 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.76 Total: -27.81 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.51 Total: -17.44 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.74 -7.91 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857066680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.291 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds