Wall clock time and date at job start Mon Mar 30 2020 01:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47235 * 2 1 4 4 C 1.52999 * 109.46923 * 240.00630 * 2 1 3 5 5 C 1.52997 * 109.47224 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47553 * 180.02562 * 5 4 2 7 7 O 1.45201 * 109.47323 * 299.99921 * 5 4 2 8 8 C 1.34220 * 117.00003 * 270.00353 * 7 5 4 9 9 O 1.20825 * 120.00506 * 359.97438 * 8 7 5 10 10 C 1.50707 * 120.00174 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00403 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00213 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46956 * 270.00252 * 16 14 12 18 18 H 1.48497 * 109.46949 * 29.99746 * 16 14 12 19 19 H 1.48494 * 109.47357 * 150.00146 * 16 14 12 20 20 C 1.53000 * 109.47191 * 59.99998 * 5 4 2 21 21 C 1.52999 * 109.47038 * 300.00116 * 20 5 4 22 22 C 1.53000 * 109.47038 * 179.97438 * 21 20 5 23 23 C 1.52997 * 109.47152 * 300.00107 * 21 20 5 24 24 C 1.52997 * 109.47224 * 59.99905 * 21 20 5 25 25 H 1.09008 * 109.46976 * 299.99031 * 1 2 3 26 26 H 1.08999 * 109.47278 * 59.99157 * 1 2 3 27 27 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47176 * 59.99918 * 4 2 1 29 29 H 1.09003 * 109.47016 * 300.00127 * 4 2 1 30 30 H 1.09002 * 109.46683 * 59.99750 * 10 8 7 31 31 H 1.08996 * 109.47057 * 300.00034 * 10 8 7 32 32 H 1.08995 * 109.46742 * 60.00466 * 11 10 8 33 33 H 1.09003 * 109.46880 * 299.99761 * 11 10 8 34 34 H 0.97001 * 120.00068 * 0.02562 * 15 14 12 35 35 H 1.09003 * 109.46864 * 59.99776 * 20 5 4 36 36 H 1.08996 * 109.47113 * 179.97438 * 20 5 4 37 37 H 1.08999 * 109.47565 * 59.99678 * 22 21 20 38 38 H 1.09001 * 109.46910 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46864 * 299.99661 * 22 21 20 40 40 H 1.08997 * 109.47397 * 71.45735 * 23 21 20 41 41 H 1.09003 * 109.47170 * 191.46470 * 23 21 20 42 42 H 1.09005 * 109.46888 * 311.46227 * 23 21 20 43 43 H 1.09003 * 109.47399 * 59.99898 * 24 21 20 44 44 H 1.09001 * 109.47553 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 1 3.9333 -1.2339 -2.1400 7 8 4.0535 0.6485 -1.2499 8 6 4.2561 1.2230 -2.4459 9 8 4.0371 0.6024 -3.4592 10 6 4.7567 2.6423 -2.5250 11 6 4.9015 3.0511 -3.9923 12 6 5.4027 4.4700 -4.0713 13 1 5.5989 5.0248 -3.1657 14 6 5.6109 5.0602 -5.2999 15 7 5.3716 4.3849 -6.4028 16 14 6.2329 6.8189 -5.3978 17 1 5.0777 7.7518 -5.4232 18 1 7.0793 7.1113 -4.2133 19 1 7.0360 6.9918 -6.6349 20 6 4.0805 -1.4416 -0.0006 21 6 3.5706 -0.7205 1.2487 22 6 4.0806 -1.4419 2.4979 23 6 4.0800 0.7222 1.2485 24 6 2.0406 -0.7210 1.2491 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2072 -2.1393 29 1 1.6766 -1.7488 -1.2494 30 1 5.7257 2.7138 -2.0310 31 1 4.0472 3.3059 -2.0309 32 1 3.9327 2.9795 -4.4866 33 1 5.6113 2.3873 -4.4860 34 1 5.0483 3.4718 -6.3519 35 1 3.7175 -2.4694 -0.0005 36 1 5.1705 -1.4416 -0.0011 37 1 5.1706 -1.4420 2.4979 38 1 3.7169 -0.9284 3.3879 39 1 3.7172 -2.4696 2.4978 40 1 3.5593 1.2913 0.4785 41 1 3.8932 1.1736 2.2230 42 1 5.1507 0.7293 1.0440 43 1 1.6775 -1.7488 1.2493 44 1 1.6772 -0.2077 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857066680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:35 Heat of formation + Delta-G solvation = -150.124273 kcal Electronic energy + Delta-G solvation = -21674.062290 eV Core-core repulsion = 18588.963166 eV Total energy + Delta-G solvation = -3085.099124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99569 -40.15320 -37.23253 -36.01600 -34.98846 -33.18458 -32.08539 -28.14719 -27.63242 -27.44726 -27.32714 -24.70311 -22.88121 -21.96182 -21.03228 -19.67904 -19.10402 -18.17832 -17.55148 -17.19952 -16.16467 -15.93358 -15.63264 -15.34330 -15.11729 -14.70461 -14.59603 -14.25856 -14.06944 -13.80343 -13.58800 -13.27682 -13.14047 -12.77995 -12.74952 -12.71052 -12.61375 -12.47803 -12.17287 -12.12992 -11.97996 -11.87473 -11.72087 -11.49917 -11.47203 -11.16305 -10.84885 -10.83968 -10.74567 -10.57826 -8.72337 -6.44634 1.20354 1.54248 1.64640 1.73582 1.81987 2.58459 3.14551 3.58110 3.61399 3.71288 3.81131 4.03667 4.04998 4.21165 4.25678 4.28599 4.32625 4.39072 4.53568 4.69046 4.70606 4.72759 4.76638 4.85402 4.89747 4.92670 4.95804 5.03512 5.06496 5.16671 5.19699 5.22614 5.26802 5.27211 5.31815 5.42089 5.47361 5.52148 5.55500 5.79552 5.88672 6.14524 6.47619 6.81605 7.40697 8.67956 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028813 B = 0.004003 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.547134 B = 6992.746919 C = 7179.864437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.126 4.126 5 C 0.077 3.923 6 H 0.061 0.939 7 O -0.328 6.328 8 C 0.457 3.543 9 O -0.550 6.550 10 C -0.089 4.089 11 C 0.025 3.975 12 C -0.620 4.620 13 H 0.068 0.932 14 C -0.042 4.042 15 N -0.939 5.939 16 Si 1.127 2.873 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.285 1.285 20 C -0.099 4.099 21 C -0.062 4.062 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.095 4.095 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.111 0.889 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.252 0.748 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -11.965 20.964 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.164 4.164 5 C 0.022 3.978 6 H 0.079 0.921 7 O -0.245 6.245 8 C 0.303 3.697 9 O -0.440 6.440 10 C -0.127 4.127 11 C -0.013 4.013 12 C -0.657 4.657 13 H 0.086 0.914 14 C -0.239 4.239 15 N -0.576 5.576 16 Si 0.946 3.054 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.211 1.211 20 C -0.137 4.137 21 C -0.062 4.062 22 C -0.193 4.193 23 C -0.201 4.201 24 C -0.132 4.132 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.056 -11.014 19.662 23.336 hybrid contribution -0.474 -1.511 0.097 1.586 sum -6.530 -12.525 19.759 24.289 Atomic orbital electron populations 1.21803 0.94310 1.02369 1.01639 1.21146 0.95985 0.99664 0.94326 0.92021 1.21984 0.93309 1.02660 0.98413 1.22952 0.95083 0.79567 1.00159 0.92057 1.86892 1.76699 1.30328 1.30586 1.24465 0.73000 0.90479 0.81806 1.90593 1.49681 1.65598 1.38143 1.21338 1.03621 0.87834 0.99868 1.18941 0.94680 0.96036 0.91613 1.22458 1.48488 0.98962 0.95793 0.91400 1.27642 0.94602 1.09783 0.91848 1.70876 1.43973 1.12054 1.30652 0.82841 0.76877 0.69128 0.76515 1.19637 1.18523 1.21126 1.21819 1.01109 0.99138 0.91586 1.20517 0.95577 0.95544 0.94527 1.21822 1.00924 1.00393 0.96183 1.22096 1.00807 0.96012 1.01208 1.21616 0.93796 1.01024 0.96785 0.91571 0.94015 0.91583 0.94263 0.88481 0.87041 0.87104 0.99734 0.99696 0.93834 0.87964 0.91369 0.92834 0.91966 0.91664 0.91584 0.92679 0.93799 0.90605 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.84 16 2 C -0.09 -1.87 2.38 -10.79 -0.03 -1.90 16 3 H 0.06 1.50 5.94 -2.39 -0.01 1.49 16 4 C -0.13 -3.00 4.93 30.59 0.15 -2.85 16 5 C 0.08 2.04 2.75 30.59 0.08 2.12 16 6 H 0.06 1.88 7.15 -2.39 -0.02 1.86 16 7 O -0.33 -10.35 5.65 -51.32 -0.29 -10.64 16 8 C 0.46 18.35 7.93 71.24 0.56 18.92 16 9 O -0.55 -26.14 15.20 21.97 0.33 -25.81 16 10 C -0.09 -3.74 5.75 29.85 0.17 -3.56 16 11 C 0.02 1.35 3.57 29.85 0.11 1.46 16 12 C -0.62 -35.63 9.11 25.60 0.23 -35.40 16 13 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 14 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 15 N -0.94 -60.72 13.65 21.45 0.29 -60.42 16 16 Si 1.13 50.28 29.90 68.60 2.05 52.33 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 C -0.10 -1.90 4.59 30.59 0.14 -1.76 16 21 C -0.06 -1.05 0.77 -52.18 -0.04 -1.09 16 22 C -0.14 -1.79 8.45 71.98 0.61 -1.18 16 23 C -0.14 -3.02 7.11 71.98 0.51 -2.51 16 24 C -0.09 -1.48 4.01 30.59 0.12 -1.35 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 31 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 32 H -0.02 -0.95 7.96 -2.39 -0.02 -0.97 16 33 H -0.02 -0.93 7.97 -2.39 -0.02 -0.95 16 34 H 0.25 16.93 7.22 -92.71 -0.67 16.26 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 1.64 3.77 -2.39 -0.01 1.63 16 41 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 42 H 0.04 0.99 8.08 -2.38 -0.02 0.97 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.18 339.64 7.18 -64.00 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.04 Total: 13.49 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.75 Total: -32.95 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.29 Total: -60.42 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: 0.04 Total: -36.45 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -71.18 7.18 -64.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857066680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.120 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds