Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 7 7 O 1.45200 * 109.47228 * 180.02562 * 5 4 2 8 8 C 1.34228 * 117.00208 * 90.00246 * 7 5 4 9 9 O 1.20829 * 119.99597 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00180 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46984 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99937 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00430 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99403 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00382 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46956 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46818 * 120.00125 * 16 14 12 19 19 H 1.48501 * 109.47320 * 240.00236 * 16 14 12 20 20 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 21 21 C 1.53002 * 109.46972 * 300.00293 * 20 5 4 22 22 C 1.53002 * 109.47128 * 299.99854 * 21 20 5 23 23 C 1.52996 * 109.47346 * 179.97438 * 21 20 5 24 24 C 1.52997 * 109.47415 * 59.99860 * 21 20 5 25 25 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 29 29 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 30 30 H 1.08996 * 109.47109 * 299.99621 * 10 8 7 31 31 H 1.09004 * 109.47169 * 59.99752 * 10 8 7 32 32 H 1.08996 * 109.47080 * 299.99874 * 11 10 8 33 33 H 1.08994 * 109.47082 * 59.99826 * 11 10 8 34 34 H 0.97001 * 120.00068 * 179.97438 * 15 14 12 35 35 H 1.08992 * 109.47534 * 180.02562 * 20 5 4 36 36 H 1.08996 * 109.47134 * 59.99508 * 20 5 4 37 37 H 1.09001 * 109.47600 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47006 * 300.00093 * 22 21 20 39 39 H 1.09002 * 109.47097 * 60.00075 * 22 21 20 40 40 H 1.09004 * 109.47368 * 299.99812 * 23 21 20 41 41 H 1.09004 * 109.47108 * 59.99711 * 23 21 20 42 42 H 1.09001 * 109.47367 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.46922 * 180.02562 * 24 21 20 44 44 H 1.09000 * 109.47140 * 59.99976 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 1 3.9330 0.3071 -1.2497 7 8 4.0541 -1.4048 -2.4353 8 6 4.2568 -0.6560 -3.5307 9 8 4.0366 0.5317 -3.4998 10 6 4.7579 -1.2967 -4.7993 11 6 4.9014 -0.2303 -5.8870 12 6 5.4019 -0.8712 -7.1558 13 1 5.5984 -1.9328 -7.1835 14 6 5.6090 -0.1022 -8.2814 15 7 5.3702 1.1906 -8.2475 16 14 6.2301 -0.8965 -9.8539 17 1 6.4200 -2.3524 -9.6315 18 1 5.2383 -0.6872 -10.9392 19 1 7.5250 -0.2814 -10.2412 20 6 4.0806 -1.4416 -0.0003 21 6 3.5705 -0.7203 1.2490 22 6 4.0799 0.7224 1.2487 23 6 4.0804 -1.4415 2.4982 24 6 2.0405 -0.7209 1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 5.7269 -1.7600 -4.6141 31 1 4.0485 -2.0566 -5.1273 32 1 3.9322 0.2327 -6.0721 33 1 5.6105 0.5298 -5.5593 34 1 5.5163 1.7317 -9.0392 35 1 5.1705 -1.4408 -0.0002 36 1 3.7176 -2.4693 0.0000 37 1 3.7170 1.2362 2.1388 38 1 5.1700 0.7228 1.2485 39 1 3.7162 1.2359 0.3587 40 1 3.7171 -2.4692 2.4983 41 1 5.1705 -1.4415 2.4983 42 1 3.7174 -0.9274 3.3882 43 1 1.6772 -0.2066 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857069728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = -136.364228 kcal Electronic energy + Delta-G solvation = -21140.995375 eV Core-core repulsion = 18056.492931 eV Total energy + Delta-G solvation = -3084.502444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53177 -39.10240 -35.95494 -34.22520 -33.55797 -31.44248 -30.66951 -27.56601 -26.82883 -26.48923 -26.02658 -22.93627 -21.26858 -20.69737 -19.73434 -18.60061 -17.26250 -16.30806 -15.85513 -15.63661 -15.25621 -14.82730 -14.45229 -14.39692 -14.12768 -13.70662 -13.00256 -12.84652 -12.68820 -12.51077 -12.30141 -12.17093 -12.00799 -11.98407 -11.63823 -11.52777 -11.23101 -11.01605 -10.97202 -10.92786 -10.68739 -10.60145 -10.58725 -10.16165 -10.03886 -9.92007 -9.81419 -9.48250 -9.14302 -8.36970 -6.00541 -4.05198 2.89072 3.14349 3.31412 3.38813 3.42708 4.38594 4.44432 4.47853 4.59731 4.78372 4.89131 5.03908 5.11360 5.19459 5.28312 5.34942 5.38648 5.42774 5.45208 5.53011 5.58124 5.61460 5.68192 5.72413 5.77773 5.83693 5.88897 5.95668 6.02329 6.09154 6.13094 6.15164 6.20212 6.21710 6.25935 6.37013 6.73174 7.03653 7.68356 7.75516 7.99560 8.29311 8.47443 9.02244 9.58808 11.10542 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.003465 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.590949 B = 8078.240078 C = 8369.047626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.129 4.129 5 C 0.084 3.916 6 H 0.085 0.915 7 O -0.363 6.363 8 C 0.455 3.545 9 O -0.506 6.506 10 C -0.104 4.104 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.104 4.104 21 C -0.062 4.062 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.104 4.104 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -5.033 21.602 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.167 4.167 5 C 0.029 3.971 6 H 0.103 0.897 7 O -0.281 6.281 8 C 0.299 3.701 9 O -0.393 6.393 10 C -0.142 4.142 11 C -0.004 4.004 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.141 4.141 21 C -0.062 4.062 22 C -0.208 4.208 23 C -0.196 4.196 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.332 -4.504 21.535 22.894 hybrid contribution 0.293 -0.203 -0.915 0.982 sum -6.039 -4.707 20.620 21.996 Atomic orbital electron populations 1.21805 0.94914 1.01824 1.01754 1.21128 0.95668 1.00030 0.94131 0.90618 1.21985 0.94538 1.01591 0.98591 1.22658 0.93910 0.97630 0.82887 0.89702 1.86605 1.77425 1.43289 1.20755 1.24741 0.73804 0.86366 0.85195 1.90613 1.47741 1.17032 1.83909 1.21750 1.01682 1.01927 0.88803 1.19013 0.98519 0.92485 0.90405 1.21205 1.44907 0.94745 0.95693 0.92275 1.25025 0.95517 0.94821 0.99011 1.70006 1.48451 1.05012 1.29334 0.86491 0.78482 0.79509 0.83240 1.19640 1.20976 1.20967 1.21643 1.01158 0.99731 0.91605 1.20501 0.95420 0.95752 0.94503 1.22040 1.01171 0.95391 1.02169 1.21838 1.01115 1.00121 0.96563 1.21703 0.94080 1.00817 0.97537 0.92674 0.92483 0.92684 0.91127 0.91222 0.89077 0.89073 0.95625 0.95622 0.92927 0.91110 0.90863 0.92548 0.92503 0.91834 0.92551 0.92493 0.92535 0.91756 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 2 C -0.09 -0.93 2.45 -90.62 -0.22 -1.15 16 3 H 0.08 0.82 6.43 -51.93 -0.33 0.48 16 4 C -0.13 -1.66 4.84 -26.73 -0.13 -1.78 16 5 C 0.08 1.20 2.18 -26.73 -0.06 1.14 16 6 H 0.09 1.34 5.44 -51.93 -0.28 1.05 16 7 O -0.36 -6.24 9.88 -39.25 -0.39 -6.62 16 8 C 0.46 9.25 7.93 36.01 0.29 9.53 16 9 O -0.51 -11.74 15.20 -18.75 -0.29 -12.02 16 10 C -0.10 -2.18 5.75 -27.88 -0.16 -2.35 16 11 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 12 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.10 -1.16 4.39 -26.73 -0.12 -1.28 16 21 C -0.06 -0.56 0.77 -154.51 -0.12 -0.68 16 22 C -0.15 -1.43 7.78 37.16 0.29 -1.14 16 23 C -0.14 -1.05 8.47 37.16 0.31 -0.74 16 24 C -0.10 -0.90 4.01 -26.73 -0.11 -1.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -31.51 345.02 -7.98 -39.50 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -8.01 Total: -2.85 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.21 Total: -13.29 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.67 Total: -18.65 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.51 -7.98 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857069728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.867 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds