Wall clock time and date at job start Mon Mar 30 2020 01:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 7 7 O 1.45200 * 109.47228 * 180.02562 * 5 4 2 8 8 C 1.34228 * 117.00208 * 90.00246 * 7 5 4 9 9 O 1.20829 * 119.99597 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00180 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46984 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99937 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00430 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99403 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00382 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46956 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46818 * 120.00125 * 16 14 12 19 19 H 1.48501 * 109.47320 * 240.00236 * 16 14 12 20 20 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 21 21 C 1.53002 * 109.46972 * 300.00293 * 20 5 4 22 22 C 1.53002 * 109.47128 * 299.99854 * 21 20 5 23 23 C 1.52996 * 109.47346 * 179.97438 * 21 20 5 24 24 C 1.52997 * 109.47415 * 59.99860 * 21 20 5 25 25 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 29 29 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 30 30 H 1.08996 * 109.47109 * 299.99621 * 10 8 7 31 31 H 1.09004 * 109.47169 * 59.99752 * 10 8 7 32 32 H 1.08996 * 109.47080 * 299.99874 * 11 10 8 33 33 H 1.08994 * 109.47082 * 59.99826 * 11 10 8 34 34 H 0.97001 * 120.00068 * 179.97438 * 15 14 12 35 35 H 1.08992 * 109.47534 * 180.02562 * 20 5 4 36 36 H 1.08996 * 109.47134 * 59.99508 * 20 5 4 37 37 H 1.09001 * 109.47600 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47006 * 300.00093 * 22 21 20 39 39 H 1.09002 * 109.47097 * 60.00075 * 22 21 20 40 40 H 1.09004 * 109.47368 * 299.99812 * 23 21 20 41 41 H 1.09004 * 109.47108 * 59.99711 * 23 21 20 42 42 H 1.09001 * 109.47367 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.46922 * 180.02562 * 24 21 20 44 44 H 1.09000 * 109.47140 * 59.99976 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 1 3.9330 0.3071 -1.2497 7 8 4.0541 -1.4048 -2.4353 8 6 4.2568 -0.6560 -3.5307 9 8 4.0366 0.5317 -3.4998 10 6 4.7579 -1.2967 -4.7993 11 6 4.9014 -0.2303 -5.8870 12 6 5.4019 -0.8712 -7.1558 13 1 5.5984 -1.9328 -7.1835 14 6 5.6090 -0.1022 -8.2814 15 7 5.3702 1.1906 -8.2475 16 14 6.2301 -0.8965 -9.8539 17 1 6.4200 -2.3524 -9.6315 18 1 5.2383 -0.6872 -10.9392 19 1 7.5250 -0.2814 -10.2412 20 6 4.0806 -1.4416 -0.0003 21 6 3.5705 -0.7203 1.2490 22 6 4.0799 0.7224 1.2487 23 6 4.0804 -1.4415 2.4982 24 6 2.0405 -0.7209 1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 5.7269 -1.7600 -4.6141 31 1 4.0485 -2.0566 -5.1273 32 1 3.9322 0.2327 -6.0721 33 1 5.6105 0.5298 -5.5593 34 1 5.5163 1.7317 -9.0392 35 1 5.1705 -1.4408 -0.0002 36 1 3.7176 -2.4693 0.0000 37 1 3.7170 1.2362 2.1388 38 1 5.1700 0.7228 1.2485 39 1 3.7162 1.2359 0.3587 40 1 3.7171 -2.4692 2.4983 41 1 5.1705 -1.4415 2.4983 42 1 3.7174 -0.9274 3.3882 43 1 1.6772 -0.2066 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857069728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:38 Heat of formation + Delta-G solvation = -152.509267 kcal Electronic energy + Delta-G solvation = -21141.695476 eV Core-core repulsion = 18056.492931 eV Total energy + Delta-G solvation = -3085.202545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84059 -40.28635 -37.46365 -35.66321 -35.02798 -33.25081 -31.96908 -28.28352 -28.05894 -27.51019 -27.35754 -24.66216 -22.72373 -21.53958 -21.35461 -19.54881 -18.96123 -18.12545 -17.33983 -17.15054 -16.48889 -16.12214 -15.83364 -15.40292 -15.26786 -14.69238 -14.43477 -14.32335 -14.08606 -13.57150 -13.47943 -13.21367 -13.01461 -12.91046 -12.85098 -12.78017 -12.58153 -12.49033 -12.44405 -12.03638 -11.95216 -11.79163 -11.77256 -11.68221 -11.51693 -11.34826 -11.13661 -11.06813 -10.86585 -10.60105 -8.21294 -6.35361 1.23725 1.42510 1.43813 1.57280 1.72229 2.42356 3.12452 3.53581 3.59862 3.66440 3.91348 3.96611 3.99903 4.20562 4.23507 4.30771 4.40139 4.42640 4.48384 4.62217 4.66016 4.72764 4.78150 4.84259 4.87845 4.90164 4.97970 5.01217 5.04192 5.11288 5.14475 5.19236 5.24114 5.37008 5.41452 5.43302 5.46736 5.51896 5.52730 5.58026 5.78984 6.11742 6.79191 6.86433 7.35016 8.91690 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.003465 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.590949 B = 8078.240078 C = 8369.047626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.126 4.126 5 C 0.076 3.924 6 H 0.064 0.936 7 O -0.355 6.355 8 C 0.463 3.537 9 O -0.545 6.545 10 C -0.095 4.095 11 C 0.039 3.961 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.253 1.253 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.099 4.099 21 C -0.058 4.058 22 C -0.152 4.152 23 C -0.135 4.135 24 C -0.099 4.099 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.115 0.885 31 H 0.114 0.886 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 -7.409 22.980 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.164 4.164 5 C 0.022 3.978 6 H 0.083 0.917 7 O -0.272 6.272 8 C 0.308 3.692 9 O -0.434 6.434 10 C -0.132 4.132 11 C 0.002 3.998 12 C -0.582 4.582 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.136 4.136 21 C -0.058 4.058 22 C -0.209 4.209 23 C -0.192 4.192 24 C -0.136 4.136 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.406 -6.914 22.944 24.805 hybrid contribution 0.292 0.580 -1.278 1.433 sum -6.115 -6.334 21.666 23.387 Atomic orbital electron populations 1.21789 0.93752 1.02492 1.02010 1.21122 0.96603 0.99297 0.93681 0.91750 1.21982 0.93349 1.02175 0.98890 1.23034 0.95064 0.96990 0.82732 0.91747 1.86561 1.77000 1.42812 1.20835 1.24512 0.73067 0.85728 0.85898 1.90606 1.49512 1.18681 1.84645 1.21517 1.03750 1.00338 0.87624 1.18789 0.95380 0.93171 0.92474 1.21670 1.44587 0.95701 0.96195 0.90440 1.26121 0.95556 0.95287 1.03297 1.70171 1.49771 1.06976 1.30669 0.85240 0.77680 0.79245 0.77890 1.17651 1.20559 1.20534 1.21696 1.01053 1.00147 0.90721 1.20516 0.95879 0.95236 0.94194 1.22049 1.01004 0.95885 1.01934 1.21803 1.01125 1.00476 0.95808 1.21693 0.93474 1.01383 0.97050 0.90947 0.93751 0.91784 0.90052 0.94228 0.86716 0.86774 0.99311 0.99269 0.92733 0.91358 0.89738 0.90900 0.92831 0.93932 0.91686 0.92549 0.91202 0.89887 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 2 C -0.09 -1.73 2.45 -10.79 -0.03 -1.76 16 3 H 0.06 1.41 6.43 -2.39 -0.02 1.39 16 4 C -0.13 -3.25 4.84 30.59 0.15 -3.10 16 5 C 0.08 2.19 2.18 30.59 0.07 2.25 16 6 H 0.06 2.14 5.44 -2.39 -0.01 2.13 16 7 O -0.35 -12.21 9.88 -51.40 -0.51 -12.72 16 8 C 0.46 19.31 7.93 71.24 0.56 19.88 16 9 O -0.54 -26.74 15.20 21.96 0.33 -26.40 16 10 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16 11 C 0.04 2.18 4.26 29.85 0.13 2.31 16 12 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 13 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 14 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 15 N -0.94 -58.92 13.29 21.45 0.28 -58.63 16 16 Si 0.98 44.18 29.54 68.60 2.03 46.20 16 17 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.10 -2.08 4.39 30.59 0.13 -1.94 16 21 C -0.06 -0.94 0.77 -52.18 -0.04 -0.98 16 22 C -0.15 -2.74 7.78 71.98 0.56 -2.18 16 23 C -0.13 -1.62 8.47 71.98 0.61 -1.01 16 24 C -0.10 -1.45 4.01 30.60 0.12 -1.33 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 31 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 32 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 33 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 34 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.04 0.94 4.81 -2.39 -0.01 0.93 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.58 345.02 6.87 -63.71 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.94 Total: 11.76 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.80 Total: -23.91 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.17 Total: -39.12 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.58 6.87 -63.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857069728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.802 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds