Wall clock time and date at job start Mon Mar 30 2020 01:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48505 * 109.47232 * 240.00126 * 3 2 1 5 5 H 1.48498 * 109.47599 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47218 * 120.00512 * 3 2 1 7 7 C 1.37874 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.46659 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99847 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99648 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00187 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00241 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46998 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46626 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47000 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47478 * 180.02562 * 19 18 17 21 21 C 1.53005 * 117.50026 * 243.74901 * 20 19 18 22 22 C 1.53001 * 117.50420 * 175.09004 * 20 19 18 23 23 H 0.97003 * 120.00258 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47412 * 60.00244 * 9 7 2 25 25 H 1.09005 * 109.47354 * 300.00634 * 9 7 2 26 26 H 1.08996 * 109.47240 * 59.99420 * 10 9 7 27 27 H 1.09000 * 109.46340 * 300.00166 * 10 9 7 28 28 H 1.08992 * 109.47441 * 59.99505 * 11 10 9 29 29 H 1.08996 * 109.46882 * 299.99054 * 11 10 9 30 30 H 0.96996 * 120.00112 * 359.97438 * 12 11 10 31 31 H 0.97010 * 119.99849 * 0.02562 * 15 13 12 32 32 H 1.09000 * 109.47175 * 60.00333 * 16 15 13 33 33 H 1.09001 * 109.47297 * 299.99840 * 16 15 13 34 34 H 1.08993 * 109.46955 * 300.00226 * 17 16 15 35 35 H 1.09000 * 109.47050 * 60.00054 * 17 16 15 36 36 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 37 37 H 1.09000 * 109.47160 * 60.00369 * 18 17 16 38 38 H 1.09004 * 109.47107 * 300.00294 * 19 18 17 39 39 H 1.09000 * 109.46866 * 60.00185 * 19 18 17 40 40 H 1.09002 * 115.54838 * 29.41066 * 20 19 18 41 41 H 1.08997 * 117.49571 * 359.97438 * 21 20 19 42 42 H 1.08994 * 117.49991 * 145.01383 * 21 20 19 43 43 H 1.08998 * 117.50050 * 214.98097 * 22 20 19 44 44 H 1.09000 * 117.49115 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9832 -7.3713 -0.0019 14 8 0.7878 -7.5934 -0.0020 15 7 2.8590 -8.3956 -0.0030 16 6 2.3707 -9.7768 -0.0037 17 6 3.5608 -10.7385 -0.0042 18 6 3.0508 -12.1809 -0.0043 19 6 4.2408 -13.1426 -0.0042 20 6 3.7310 -14.5851 -0.0049 21 6 4.0610 -15.4517 1.2121 22 6 4.7703 -15.7019 -0.1211 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8721 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.8539 -5.0445 -0.8913 29 1 0.8535 -5.0451 0.8886 30 1 3.3860 -5.9233 -0.0021 31 1 3.8128 -8.2183 -0.0033 32 1 1.7648 -9.9476 -0.8935 33 1 1.7656 -9.9488 0.8865 34 1 4.1663 -10.5667 -0.8941 35 1 4.1664 -10.5676 0.8858 36 1 2.4456 -12.3525 0.8858 37 1 2.4450 -12.3521 -0.8942 38 1 4.8465 -12.9713 -0.8941 39 1 4.8463 -12.9714 0.8859 40 1 2.7668 -14.7426 -0.4883 41 1 4.6418 -14.9943 2.0130 42 1 3.3142 -16.1796 1.5291 43 1 4.4899 -16.5942 -0.6807 44 1 5.8174 -15.4088 -0.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868211173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:43 Heat of formation + Delta-G solvation = -47.854384 kcal Electronic energy + Delta-G solvation = -18987.622978 eV Core-core repulsion = 15939.251360 eV Total energy + Delta-G solvation = -3048.371618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77372 -38.26462 -36.24578 -35.17127 -33.57029 -33.15400 -31.13775 -29.08412 -26.57583 -24.29081 -22.85928 -22.75159 -21.65941 -20.80225 -20.73750 -20.27212 -17.93255 -16.58309 -16.33686 -16.05769 -15.74358 -15.29374 -14.79787 -14.53542 -14.29646 -14.18915 -13.90215 -13.51009 -12.84123 -12.57811 -12.25403 -12.16072 -11.92670 -11.79094 -11.63274 -11.55956 -11.43375 -11.05707 -10.86721 -10.69688 -10.60688 -10.58175 -10.28683 -10.05968 -9.83178 -9.41651 -9.15758 -9.11741 -8.55560 -8.35243 -5.99913 -4.03127 2.86308 3.33089 3.36275 3.37861 3.39769 3.42179 4.12423 4.41455 4.44894 4.47437 4.48991 4.63640 4.68176 4.80173 5.00031 5.14255 5.20966 5.35140 5.35644 5.37017 5.42862 5.51292 5.60643 5.67671 5.68689 5.74783 5.84363 5.84831 5.93729 5.98684 6.21553 6.49236 6.56739 6.65323 6.84323 7.05106 7.11797 7.65660 7.79004 7.98930 8.19786 8.39901 8.80165 9.03339 9.60840 11.11285 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.074060 B = 0.001886 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.981761 B =14839.951232 C =15097.365341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.699 3.301 14 O -0.594 6.594 15 N -0.753 5.753 16 C 0.139 3.861 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.153 4.153 21 C -0.182 4.182 22 C -0.184 4.184 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.068 -28.432 0.249 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.397 5.397 13 C 0.398 3.602 14 O -0.472 6.472 15 N -0.410 5.410 16 C 0.014 3.986 17 C -0.169 4.169 18 C -0.152 4.152 19 C -0.126 4.126 20 C -0.171 4.171 21 C -0.219 4.219 22 C -0.221 4.221 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.758 -28.499 0.250 30.124 hybrid contribution 1.351 1.076 0.011 1.727 sum 11.109 -27.423 0.262 29.588 Atomic orbital electron populations 1.69954 1.06048 1.26774 1.50455 1.25024 0.94856 0.99267 0.95286 0.86640 0.79551 0.83120 0.78552 1.20269 1.21272 1.20279 1.21172 0.92952 0.90980 1.51069 0.92711 1.19029 0.93869 0.90794 0.97709 1.21889 0.99783 0.93358 1.00799 1.21505 0.91314 0.84165 1.01864 1.45389 1.10409 1.04494 1.79385 1.16037 0.85327 0.80811 0.78007 1.90917 1.14197 1.84178 1.57947 1.45137 1.08870 1.05460 1.81512 1.21153 0.96079 0.79059 1.02297 1.21808 0.97824 0.94548 1.02741 1.21471 0.97915 0.92957 1.02822 1.21182 0.97627 0.91690 1.02100 1.22381 0.99946 0.92227 1.02579 1.23052 1.03677 1.03437 0.91738 1.22977 0.97982 1.00339 1.00798 0.92883 0.96223 0.96236 0.92781 0.92788 0.91986 0.91983 0.77357 0.77283 0.91788 0.91797 0.91280 0.91319 0.91399 0.91455 0.91530 0.91780 0.87758 0.88808 0.88965 0.88947 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.13 2.47 5.67 -4.04 -0.02 2.44 16 12 N -0.74 -11.10 5.56 -65.23 -0.36 -11.46 16 13 C 0.70 11.08 8.57 -86.93 -0.74 10.33 16 14 O -0.59 -12.12 16.34 5.29 0.09 -12.04 16 15 N -0.75 -8.35 5.56 -65.22 -0.36 -8.72 16 16 C 0.14 1.36 5.67 -4.04 -0.02 1.33 16 17 C -0.13 -0.84 5.33 -26.73 -0.14 -0.98 16 18 C -0.11 -0.68 5.17 -26.73 -0.14 -0.81 16 19 C -0.09 -0.49 5.50 -26.73 -0.15 -0.63 16 20 C -0.15 -0.89 5.73 -90.62 -0.52 -1.41 16 21 C -0.18 -1.01 10.18 -26.69 -0.27 -1.29 16 22 C -0.18 -1.00 10.25 -26.69 -0.27 -1.27 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 31 H 0.39 3.14 8.49 -40.82 -0.35 2.79 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 40 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -33.32 365.77 -10.63 -43.95 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.24 Total: 0.25 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.97 Total: -7.83 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.01 Total: -46.39 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.32 -10.63 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868211173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.906 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds