Wall clock time and date at job start Mon Mar 30 2020 00:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 C 1.53000 * 109.47007 * 239.99682 * 2 1 3 5 5 C 1.53002 * 109.46917 * 119.99676 * 2 1 3 6 6 H 1.09000 * 115.56618 * 274.31095 * 5 2 1 7 7 C 1.52998 * 117.49643 * 128.61821 * 5 2 1 8 8 C 1.52997 * 60.00226 * 252.51163 * 7 5 2 9 9 H 1.08999 * 117.50055 * 107.51355 * 8 7 5 10 10 C 1.50698 * 117.50103 * 252.50895 * 8 7 5 11 11 O 1.20826 * 119.99663 * 68.60876 * 10 8 7 12 12 O 1.34225 * 120.00341 * 248.60478 * 10 8 7 13 13 C 1.45203 * 117.00328 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47368 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47317 * 300.00718 * 14 13 12 16 16 C 1.53006 * 109.46623 * 60.00538 * 14 13 12 17 17 C 1.50697 * 109.46961 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00055 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99687 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00458 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46872 * 59.99743 * 21 19 17 23 23 H 1.48503 * 109.47008 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46914 * 299.99916 * 21 19 17 25 25 H 1.09008 * 109.47094 * 300.00712 * 1 2 3 26 26 H 1.08999 * 109.47059 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47322 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47044 * 300.00073 * 3 2 1 30 30 H 1.09000 * 109.47547 * 59.99882 * 3 2 1 31 31 H 1.09005 * 109.46939 * 300.00357 * 4 2 1 32 32 H 1.08999 * 109.46899 * 60.00284 * 4 2 1 33 33 H 1.09000 * 109.46672 * 180.02562 * 4 2 1 34 34 H 1.09002 * 117.49717 * 145.02228 * 7 5 2 35 35 H 1.09002 * 117.50282 * 0.02562 * 7 5 2 36 36 H 1.09002 * 109.46690 * 60.00684 * 13 12 10 37 37 H 1.09000 * 109.47396 * 300.00837 * 13 12 10 38 38 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 39 39 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47261 * 59.99813 * 15 14 13 41 41 H 1.08993 * 109.46955 * 300.00075 * 16 14 13 42 42 H 1.09000 * 109.47050 * 59.99904 * 16 14 13 43 43 H 1.09001 * 109.47002 * 179.97438 * 16 14 13 44 44 H 0.96999 * 120.00480 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 2.1271 -0.1061 2.1449 7 6 3.0740 -1.8314 1.0515 8 6 1.6356 -2.1852 1.4344 9 1 1.0064 -2.6348 0.6663 10 6 1.3882 -2.6663 2.8409 11 8 1.5117 -1.9043 3.7705 12 8 1.0307 -3.9412 3.0611 13 6 0.8094 -4.3349 4.4411 14 6 0.4131 -5.8118 4.4928 15 6 -0.8718 -6.0235 3.6897 16 6 1.5351 -6.6621 3.8936 17 6 0.1828 -6.2202 5.9250 18 1 0.3064 -5.4984 6.7189 19 6 -0.1855 -7.5152 6.2218 20 7 -0.3365 -8.3940 5.2551 21 14 -0.4717 -8.0214 7.9971 22 1 -1.5616 -7.1963 8.5775 23 1 -0.8562 -9.4549 8.0473 24 1 0.7746 -7.8150 8.7776 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6765 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.8414 -1.9465 1.8169 35 1 3.3913 -2.0477 0.0313 36 1 0.0104 -3.7288 4.8681 37 1 1.7249 -4.1845 5.0132 38 1 -1.6711 -5.4177 4.1166 39 1 -1.1538 -7.0758 3.7262 40 1 -0.7056 -5.7280 2.6537 41 1 1.7013 -6.3665 2.8577 42 1 2.4505 -6.5112 4.4658 43 1 1.2530 -7.7143 3.9308 44 1 -0.5953 -9.3052 5.4640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870287693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:19 Heat of formation + Delta-G solvation = -88.884496 kcal Electronic energy + Delta-G solvation = -21142.578509 eV Core-core repulsion = 18060.134941 eV Total energy + Delta-G solvation = -3082.443568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35486 -38.74820 -36.48546 -34.80146 -33.97720 -31.24628 -27.64637 -27.46716 -26.31952 -25.60158 -25.23863 -23.93028 -23.00464 -20.13117 -18.83755 -18.51831 -17.44194 -16.04950 -15.95562 -15.68002 -15.36120 -14.75420 -14.35269 -14.02303 -13.48989 -13.14914 -13.02939 -12.66690 -12.56763 -12.50509 -11.96415 -11.84655 -11.66887 -11.46645 -11.36799 -11.20085 -11.15731 -10.93858 -10.77752 -10.72653 -10.40172 -10.37100 -10.20233 -10.11775 -9.97910 -9.86666 -9.38775 -9.28077 -8.75019 -8.36445 -6.00854 -4.12618 2.50213 3.16342 3.30091 3.34384 3.38550 3.74791 4.37929 4.48084 4.54859 4.67926 4.85538 4.95728 5.07021 5.25316 5.31861 5.34964 5.44413 5.48644 5.56319 5.61480 5.72563 5.75534 5.86787 5.90563 5.95653 6.06155 6.12097 6.12561 6.18345 6.24408 6.48932 6.77155 7.00056 7.10658 7.16200 7.18458 7.42340 7.63842 7.70855 8.06457 8.17250 8.31641 8.41550 8.87157 9.52768 11.00326 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042220 B = 0.003597 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.028671 B = 7782.029676 C = 7896.669118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.138 4.138 4 C -0.148 4.148 5 C -0.110 4.110 6 H 0.118 0.882 7 C -0.150 4.150 8 C -0.160 4.160 9 H 0.132 0.868 10 C 0.483 3.517 11 O -0.522 6.522 12 O -0.344 6.344 13 C 0.084 3.916 14 C 0.070 3.930 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.069 3.931 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 13.838 -12.715 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.128 4.128 6 H 0.136 0.864 7 C -0.187 4.187 8 C -0.179 4.179 9 H 0.149 0.851 10 C 0.326 3.674 11 O -0.412 6.412 12 O -0.259 6.259 13 C 0.012 3.988 14 C 0.070 3.930 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.133 4.133 20 N -0.521 5.521 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.187 13.809 -12.430 19.045 hybrid contribution -0.226 -0.334 1.247 1.310 sum 3.961 13.475 -11.183 17.953 Atomic orbital electron populations 1.21877 0.94060 1.02289 1.01762 1.20104 0.95736 0.95214 0.92933 1.21828 1.01116 0.94745 1.01816 1.22048 1.01216 1.00533 0.96723 1.22552 1.01166 0.89145 0.99942 0.86438 1.23261 0.90521 1.01393 1.03540 1.21786 1.01872 1.00322 0.93936 0.85065 1.22488 0.73276 0.81235 0.90371 1.90605 1.48790 1.56456 1.45369 1.86508 1.77470 1.27221 1.34747 1.23674 0.99846 0.99286 0.76040 1.18236 0.93194 0.85708 0.95868 1.21765 0.97520 1.03637 0.95744 1.21765 0.97017 1.03894 0.95995 1.20910 1.47379 0.95917 0.90919 0.92576 1.24854 0.94886 0.96297 0.97274 1.69818 1.47163 1.03970 1.31114 0.86601 0.78726 0.77444 0.84898 1.20236 1.21196 1.20237 0.92390 0.92583 0.92312 0.92458 0.92534 0.92457 0.92240 0.92499 0.92078 0.88263 0.86883 0.92609 0.92645 0.95866 0.89742 0.96463 0.96423 0.95888 0.89742 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.31 37.16 0.31 -1.01 16 2 C -0.04 -0.36 0.88 -154.51 -0.14 -0.49 16 3 C -0.14 -1.08 8.46 37.16 0.31 -0.76 16 4 C -0.15 -1.14 7.07 37.16 0.26 -0.88 16 5 C -0.11 -1.24 4.66 -90.62 -0.42 -1.66 16 6 H 0.12 1.51 7.64 -51.93 -0.40 1.11 16 7 C -0.15 -1.65 9.27 -26.73 -0.25 -1.90 16 8 C -0.16 -2.16 5.15 -91.77 -0.47 -2.63 16 9 H 0.13 1.60 7.07 -51.93 -0.37 1.23 16 10 C 0.48 8.90 7.74 36.00 0.28 9.18 16 11 O -0.52 -10.82 16.01 -18.75 -0.30 -11.12 16 12 O -0.34 -7.15 8.88 -39.24 -0.35 -7.50 16 13 C 0.08 1.93 4.26 37.16 0.16 2.09 16 14 C 0.07 1.76 0.58 -155.66 -0.09 1.67 16 15 C -0.13 -3.16 8.11 37.16 0.30 -2.86 16 16 C -0.13 -3.17 8.11 37.16 0.30 -2.86 16 17 C -0.51 -13.93 8.01 -34.44 -0.28 -14.21 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 20 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 21 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 7.07 -51.93 -0.37 0.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 6.97 -51.93 -0.36 0.07 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.11 0.99 5.85 -51.93 -0.30 0.68 16 36 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 37 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 40 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 41 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -28.84 345.85 -7.54 -36.38 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.79 Total: -0.71 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 0.19 Total: -14.57 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.52 Total: -23.68 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.65 Total: -18.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.84 -7.54 -36.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870287693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.503 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds