Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 C 1.53000 * 109.47007 * 239.99682 * 2 1 3 5 5 C 1.53002 * 109.46917 * 119.99676 * 2 1 3 6 6 H 1.09000 * 115.56618 * 274.31095 * 5 2 1 7 7 C 1.52998 * 117.49643 * 128.61821 * 5 2 1 8 8 C 1.52997 * 60.00226 * 252.51163 * 7 5 2 9 9 H 1.08999 * 117.50055 * 107.51355 * 8 7 5 10 10 C 1.50698 * 117.50103 * 252.50895 * 8 7 5 11 11 O 1.20826 * 119.99663 * 68.60876 * 10 8 7 12 12 O 1.34225 * 120.00341 * 248.60478 * 10 8 7 13 13 C 1.45203 * 117.00328 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47368 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47317 * 300.00718 * 14 13 12 16 16 C 1.53006 * 109.46623 * 60.00538 * 14 13 12 17 17 C 1.50697 * 109.46961 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00055 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99687 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00458 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99926 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46872 * 59.99743 * 21 19 17 23 23 H 1.48503 * 109.47008 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46914 * 299.99916 * 21 19 17 25 25 H 1.09008 * 109.47094 * 300.00712 * 1 2 3 26 26 H 1.08999 * 109.47059 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47322 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47044 * 300.00073 * 3 2 1 30 30 H 1.09000 * 109.47547 * 59.99882 * 3 2 1 31 31 H 1.09005 * 109.46939 * 300.00357 * 4 2 1 32 32 H 1.08999 * 109.46899 * 60.00284 * 4 2 1 33 33 H 1.09000 * 109.46672 * 180.02562 * 4 2 1 34 34 H 1.09002 * 117.49717 * 145.02228 * 7 5 2 35 35 H 1.09002 * 117.50282 * 0.02562 * 7 5 2 36 36 H 1.09002 * 109.46690 * 60.00684 * 13 12 10 37 37 H 1.09000 * 109.47396 * 300.00837 * 13 12 10 38 38 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 39 39 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47261 * 59.99813 * 15 14 13 41 41 H 1.08993 * 109.46955 * 300.00075 * 16 14 13 42 42 H 1.09000 * 109.47050 * 59.99904 * 16 14 13 43 43 H 1.09001 * 109.47002 * 179.97438 * 16 14 13 44 44 H 0.96999 * 120.00480 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 2.1271 -0.1061 2.1449 7 6 3.0740 -1.8314 1.0515 8 6 1.6356 -2.1852 1.4344 9 1 1.0064 -2.6348 0.6663 10 6 1.3882 -2.6663 2.8409 11 8 1.5117 -1.9043 3.7705 12 8 1.0307 -3.9412 3.0611 13 6 0.8094 -4.3349 4.4411 14 6 0.4131 -5.8118 4.4928 15 6 -0.8718 -6.0235 3.6897 16 6 1.5351 -6.6621 3.8936 17 6 0.1828 -6.2202 5.9250 18 1 0.3064 -5.4984 6.7189 19 6 -0.1855 -7.5152 6.2218 20 7 -0.3365 -8.3940 5.2551 21 14 -0.4717 -8.0214 7.9971 22 1 -1.5616 -7.1963 8.5775 23 1 -0.8562 -9.4549 8.0473 24 1 0.7746 -7.8150 8.7776 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6765 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.8414 -1.9465 1.8169 35 1 3.3913 -2.0477 0.0313 36 1 0.0104 -3.7288 4.8681 37 1 1.7249 -4.1845 5.0132 38 1 -1.6711 -5.4177 4.1166 39 1 -1.1538 -7.0758 3.7262 40 1 -0.7056 -5.7280 2.6537 41 1 1.7013 -6.3665 2.8577 42 1 2.4505 -6.5112 4.4658 43 1 1.2530 -7.7143 3.9308 44 1 -0.5953 -9.3052 5.4640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870287693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = -101.606205 kcal Electronic energy + Delta-G solvation = -21143.130163 eV Core-core repulsion = 18060.134941 eV Total energy + Delta-G solvation = -3082.995223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72629 -39.87102 -38.18038 -36.62027 -34.86656 -33.27896 -28.39731 -28.10040 -27.90523 -27.59912 -27.25959 -25.36900 -23.85646 -21.52766 -20.73962 -19.39625 -18.77037 -17.79461 -17.56682 -17.31493 -16.70142 -16.33284 -15.27410 -14.95374 -14.84157 -14.78832 -14.58362 -14.07025 -13.60676 -13.46602 -13.33796 -13.16138 -13.09412 -12.83469 -12.67378 -12.59245 -12.46017 -12.34892 -12.15269 -12.11698 -11.97979 -11.75546 -11.62636 -11.49760 -11.32362 -11.23275 -11.17635 -10.93618 -10.76744 -10.42057 -8.06182 -6.24882 1.08781 1.43509 1.43906 1.51154 1.74839 2.44078 2.73745 3.16949 3.58231 3.63468 3.74838 3.95432 4.09000 4.22592 4.24641 4.24802 4.29785 4.56839 4.58496 4.71113 4.81490 4.83778 4.85279 4.95076 4.97390 5.01913 5.09631 5.12400 5.17248 5.17692 5.20278 5.23884 5.34040 5.39222 5.50969 5.54876 5.58320 5.61207 5.64884 6.04905 6.15212 6.34819 6.74617 6.82179 7.43163 8.93431 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042220 B = 0.003597 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.028671 B = 7782.029676 C = 7896.669118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C -0.137 4.137 4 C -0.148 4.148 5 C -0.101 4.101 6 H 0.098 0.902 7 C -0.133 4.133 8 C -0.176 4.176 9 H 0.148 0.852 10 C 0.478 3.522 11 O -0.551 6.551 12 O -0.350 6.350 13 C 0.096 3.904 14 C 0.061 3.939 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.538 4.538 18 H 0.048 0.952 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.019 0.981 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.019 0.981 43 H 0.064 0.936 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 14.555 -14.207 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.194 4.194 4 C -0.205 4.205 5 C -0.119 4.119 6 H 0.116 0.884 7 C -0.169 4.169 8 C -0.194 4.194 9 H 0.166 0.834 10 C 0.324 3.676 11 O -0.442 6.442 12 O -0.266 6.266 13 C 0.023 3.977 14 C 0.061 3.939 15 C -0.175 4.175 16 C -0.175 4.175 17 C -0.576 4.576 18 H 0.067 0.933 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.200 1.200 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.162 0.838 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.083 0.917 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.735 14.536 -13.936 20.686 hybrid contribution -0.383 -0.497 1.684 1.797 sum 4.352 14.039 -12.251 19.134 Atomic orbital electron populations 1.21901 0.94413 1.01864 1.01991 1.20139 0.95432 0.95783 0.92320 1.21825 1.01491 0.93919 1.02164 1.22054 1.01852 1.00350 0.96223 1.22635 1.00773 0.88046 1.00448 0.88355 1.23440 0.88833 0.99804 1.04862 1.21894 1.04406 1.02193 0.90939 0.83440 1.23482 0.71930 0.79984 0.92229 1.90588 1.50021 1.56760 1.46859 1.86503 1.78046 1.28943 1.33067 1.23256 0.99024 0.98026 0.77396 1.18266 0.93535 0.86978 0.95131 1.21615 0.97200 1.02185 0.96547 1.21612 0.96613 1.02510 0.96793 1.21178 1.48187 0.96302 0.91919 0.93340 1.25516 0.94560 0.96220 1.00832 1.69926 1.47104 1.04109 1.32581 0.85693 0.78561 0.77239 0.80607 1.20010 1.20514 1.19969 0.93667 0.90895 0.93063 0.91880 0.91074 0.93278 0.92384 0.91232 0.91087 0.88975 0.83841 0.93517 0.93455 0.96226 0.91674 0.94963 0.94931 0.96193 0.91679 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.31 71.98 0.60 -1.82 16 2 C -0.04 -0.57 0.88 -52.18 -0.05 -0.62 16 3 C -0.14 -1.82 8.46 71.98 0.61 -1.21 16 4 C -0.15 -1.76 7.07 71.98 0.51 -1.25 16 5 C -0.10 -2.13 4.66 -10.79 -0.05 -2.18 16 6 H 0.10 2.50 7.64 -2.39 -0.02 2.48 16 7 C -0.13 -2.62 9.27 30.59 0.28 -2.33 16 8 C -0.18 -4.50 5.15 -11.54 -0.06 -4.55 16 9 H 0.15 3.30 7.07 -2.39 -0.02 3.28 16 10 C 0.48 17.58 7.74 71.24 0.55 18.13 16 11 O -0.55 -23.18 16.01 21.96 0.35 -22.83 16 12 O -0.35 -14.49 8.88 -51.37 -0.46 -14.95 16 13 C 0.10 4.48 4.26 71.98 0.31 4.79 16 14 C 0.06 3.09 0.58 -52.93 -0.03 3.06 16 15 C -0.12 -5.79 8.11 71.98 0.58 -5.21 16 16 C -0.12 -5.77 8.11 71.98 0.58 -5.19 16 17 C -0.54 -29.51 8.01 25.60 0.21 -29.30 16 18 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 19 C 0.03 1.56 5.15 84.66 0.44 2.00 16 20 N -0.90 -49.43 9.35 21.45 0.20 -49.23 16 21 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.93 7.29 -2.39 -0.02 0.91 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.73 7.07 -2.38 -0.02 0.71 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.72 6.97 -2.39 -0.02 0.70 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.14 1.97 5.85 -2.39 -0.01 1.95 16 36 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 37 H 0.05 2.23 8.13 -2.39 -0.02 2.22 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 40 H 0.03 1.43 7.68 -2.38 -0.02 1.41 16 41 H 0.03 1.44 7.68 -2.39 -0.02 1.43 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 44 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -61.54 345.85 7.55 -53.99 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.95 Total: 13.68 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.48 Total: -25.71 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.20 Total: -49.23 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.10 Total: -37.78 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.54 7.55 -53.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870287693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.616 kcal (2) G-P(sol) polarization free energy of solvation -61.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds