Wall clock time and date at job start Mon Mar 30 2020 01:44:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46888 * 1
3 3 C 1.43563 * 111.87947 * 2 1
4 4 C 1.54456 * 109.74446 * 223.17606 * 3 2 1
5 5 N 1.47974 * 110.24050 * 296.73605 * 4 3 2
6 6 C 1.34578 * 119.01177 * 164.31314 * 5 4 3
7 7 O 1.21276 * 120.00235 * 179.97438 * 6 5 4
8 8 C 1.50706 * 120.00062 * 0.02562 * 6 5 4
9 9 C 1.53002 * 109.47059 * 179.97438 * 8 6 5
10 10 C 1.50701 * 109.46785 * 180.02562 * 9 8 6
11 11 H 1.07998 * 120.00403 * 359.97438 * 10 9 8
12 12 C 1.37881 * 119.99639 * 180.02562 * 10 9 8
13 13 N 1.31511 * 120.00374 * 359.97438 * 12 10 9
14 14 Si 1.86799 * 119.99774 * 179.97438 * 12 10 9
15 15 H 1.48499 * 109.47416 * 359.97438 * 14 12 10
16 16 H 1.48499 * 109.47350 * 119.99315 * 14 12 10
17 17 H 1.48499 * 109.47037 * 239.99691 * 14 12 10
18 18 C 1.44751 * 121.74520 * 344.35439 * 5 4 3
19 19 C 1.54311 * 110.08925 * 81.60446 * 18 5 4
20 20 C 1.45030 * 111.81111 * 132.03377 * 2 1 3
21 21 C 1.54443 * 106.82284 * 45.93994 * 20 2 1
22 22 C 1.53001 * 110.29198 * 290.75167 * 20 2 1
23 23 H 1.09003 * 109.47188 * 281.26787 * 1 2 3
24 24 H 1.08998 * 109.47594 * 41.26868 * 1 2 3
25 25 H 1.09000 * 109.46917 * 161.27158 * 1 2 3
26 26 H 1.09895 * 109.12094 * 341.44519 * 3 2 1
27 27 H 1.08554 * 112.73543 * 101.45866 * 3 2 1
28 28 H 1.08641 * 109.28372 * 57.03000 * 4 3 2
29 29 H 1.08899 * 108.97704 * 176.97860 * 4 3 2
30 30 H 1.09003 * 109.46841 * 299.99784 * 8 6 5
31 31 H 1.09003 * 109.47207 * 59.99905 * 8 6 5
32 32 H 1.09005 * 109.46700 * 299.99609 * 9 8 6
33 33 H 1.08998 * 109.47493 * 59.99686 * 9 8 6
34 34 H 0.96996 * 120.00638 * 180.02562 * 13 12 10
35 35 H 1.08916 * 109.46669 * 319.50686 * 18 5 4
36 36 H 1.09521 * 108.67141 * 201.29490 * 18 5 4
37 37 H 1.09678 * 108.93990 * 161.83384 * 19 18 5
38 38 H 1.09447 * 109.45016 * 44.10316 * 19 18 5
39 39 H 1.08994 * 109.47632 * 178.85506 * 21 20 2
40 40 H 1.08997 * 109.47355 * 298.85629 * 21 20 2
41 41 H 1.09005 * 109.46897 * 58.85260 * 21 20 2
42 42 H 1.09000 * 109.47237 * 290.01504 * 22 20 2
43 43 H 1.08996 * 109.46932 * 50.02338 * 22 20 2
44 44 H 1.08999 * 109.46586 * 170.01777 * 22 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 2.0039 1.3322 0.0000
4 6 3.1821 1.4214 -0.9947
5 7 4.2837 0.5319 -0.5646
6 6 5.2541 0.2226 -1.4441
7 8 6.1657 -0.5045 -1.1105
8 6 5.2088 0.7806 -2.8433
9 6 6.4201 0.2787 -3.6320
10 6 6.3750 0.8373 -5.0310
11 1 5.5635 1.4850 -5.3280
12 6 7.3694 0.5204 -5.9320
13 7 8.3574 -0.2687 -5.5706
14 14 7.3132 1.2122 -7.6663
15 1 6.1079 2.0658 -7.8200
16 1 8.5309 2.0252 -7.9147
17 1 7.2560 0.0952 -8.6431
18 6 4.3433 -0.0135 0.7750
19 6 3.4321 -1.2542 0.8832
20 6 2.0077 -0.9016 1.0001
21 6 1.2193 -2.2242 0.8807
22 6 1.7328 -0.3612 2.4049
23 1 -0.3634 0.2008 1.0079
24 1 -0.3634 0.7724 -0.6778
25 1 -0.3633 -0.9733 -0.3300
26 1 1.2246 2.0331 -0.3304
27 1 2.3448 1.6474 0.9812
28 1 2.8414 1.1228 -1.9822
29 1 3.5434 2.4482 -1.0247
30 1 4.2931 0.4530 -3.3356
31 1 5.2291 1.8696 -2.8010
32 1 7.3355 0.6067 -3.1395
33 1 6.4003 -0.8103 -3.6743
34 1 9.0571 -0.4914 -6.2043
35 1 4.0448 0.7505 1.4915
36 1 5.3773 -0.3037 0.9897
37 1 3.7251 -1.8351 1.7661
38 1 3.5731 -1.8879 0.0020
39 1 1.6049 -2.9436 1.6031
40 1 0.1643 -2.0378 1.0813
41 1 1.3323 -2.6249 -0.1267
42 1 2.3431 0.5250 2.5792
43 1 0.6785 -0.0995 2.4935
44 1 1.9811 -1.1242 3.1426
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871158358.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:52
Heat of formation + Delta-G solvation = -30.333225 kcal
Electronic energy + Delta-G solvation = -21752.392843 eV
Core-core repulsion = 18704.780999 eV
Total energy + Delta-G solvation = -3047.611843 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.51282 -38.69716 -35.10970 -34.18720 -33.35666 -31.06547 -29.40479 -29.03343
-27.42636 -25.89167 -25.19808 -23.67627 -22.32002 -20.85763 -18.96694 -18.31518
-16.93343 -16.23962 -15.99904 -15.80841 -15.46260 -14.92073 -14.49860 -14.35457
-13.87400 -13.71711 -13.42596 -12.75042 -12.50625 -12.46915 -12.35455 -12.12139
-12.04678 -11.86169 -11.80887 -11.52673 -11.46040 -11.31300 -10.97257 -10.90178
-10.72862 -10.52881 -10.44728 -9.85473 -9.54503 -9.06435 -8.87469 -8.27941
-8.23276 -8.19190 -5.90305 -3.94131 3.34822 3.36323 3.42413 3.44489
3.47366 3.65287 4.51851 4.53918 4.70082 4.79274 4.91130 4.97110
5.10784 5.18482 5.25842 5.30211 5.39110 5.42490 5.44619 5.49738
5.57858 5.64038 5.65676 5.71225 5.74156 5.84720 5.87357 5.95919
6.07306 6.13285 6.33981 6.37087 6.39588 6.93664 7.01371 7.07871
7.26440 7.81628 7.87270 7.95274 8.14681 8.46298 8.90719 9.15115
9.69015 11.20796
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.031450 B = 0.004092 C = 0.003901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 890.076487 B = 6840.803059 C = 7175.100947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.553 5.553
3 C 0.061 3.939
4 C 0.118 3.882
5 N -0.615 5.615
6 C 0.509 3.491
7 O -0.539 6.539
8 C -0.127 4.127
9 C 0.037 3.963
10 C -0.524 4.524
11 H 0.056 0.944
12 C 0.057 3.943
13 N -0.890 5.890
14 Si 0.891 3.109
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.284 1.284
18 C 0.116 3.884
19 C -0.122 4.122
20 C 0.133 3.867
21 C -0.152 4.152
22 C -0.184 4.184
23 H 0.026 0.974
24 H 0.066 0.934
25 H 0.070 0.930
26 H 0.077 0.923
27 H 0.048 0.952
28 H 0.082 0.918
29 H 0.064 0.936
30 H 0.078 0.922
31 H 0.076 0.924
32 H 0.022 0.978
33 H 0.022 0.978
34 H 0.259 0.741
35 H 0.062 0.938
36 H 0.084 0.916
37 H 0.074 0.926
38 H 0.074 0.926
39 H 0.057 0.943
40 H 0.055 0.945
41 H 0.063 0.937
42 H 0.055 0.945
43 H 0.054 0.946
44 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.022 1.928 15.953 24.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.277 5.277
3 C -0.067 4.067
4 C -0.006 4.006
5 N -0.350 5.350
6 C 0.300 3.700
7 O -0.415 6.415
8 C -0.167 4.167
9 C -0.001 4.001
10 C -0.562 4.562
11 H 0.074 0.926
12 C -0.144 4.144
13 N -0.529 5.529
14 Si 0.719 3.281
15 H -0.198 1.198
16 H -0.211 1.211
17 H -0.211 1.211
18 C -0.008 4.008
19 C -0.161 4.161
20 C 0.044 3.956
21 C -0.209 4.209
22 C -0.243 4.243
23 H 0.044 0.956
24 H 0.084 0.916
25 H 0.089 0.911
26 H 0.096 0.904
27 H 0.067 0.933
28 H 0.100 0.900
29 H 0.082 0.918
30 H 0.097 0.903
31 H 0.094 0.906
32 H 0.040 0.960
33 H 0.041 0.959
34 H 0.069 0.931
35 H 0.080 0.920
36 H 0.103 0.897
37 H 0.092 0.908
38 H 0.093 0.907
39 H 0.076 0.924
40 H 0.074 0.926
41 H 0.083 0.917
42 H 0.074 0.926
43 H 0.073 0.927
44 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -17.239 1.281 15.688 23.344
hybrid contribution -0.308 0.688 -0.219 0.785
sum -17.548 1.970 15.469 23.475
Atomic orbital electron populations
1.22418 0.86127 1.02704 0.99746 1.57837 1.06814 1.11255 1.51825
1.21826 0.97025 0.89059 0.98839 1.22173 0.86267 0.93101 0.99051
1.47897 1.25081 1.49944 1.12102 1.21479 0.80471 0.80083 0.87993
1.90641 1.34858 1.36983 1.79008 1.21856 1.03692 1.00771 0.90362
1.18900 0.91015 0.97048 0.93116 1.21276 1.08558 1.29683 0.96695
0.92606 1.25023 0.95522 0.95238 0.98622 1.70009 1.11945 1.35902
1.35071 0.86555 0.77868 0.78817 0.84837 1.19754 1.21070 1.21062
1.21206 1.00954 0.94451 0.84223 1.21285 0.92871 0.98683 1.03220
1.19446 0.95432 0.92356 0.88351 1.22543 0.99602 0.96259 1.02531
1.22617 1.01420 1.01898 0.98344 0.95567 0.91566 0.91124 0.90446
0.93342 0.89994 0.91776 0.90328 0.90578 0.95959 0.95920 0.93080
0.91955 0.89717 0.90751 0.90722 0.92441 0.92587 0.91749 0.92599
0.92712 0.91912
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.29 8.40 60.06 0.50 0.80 16
2 N -0.55 -5.63 3.96 -232.49 -0.92 -6.55 16
3 C 0.06 0.59 4.96 -4.83 -0.02 0.56 16
4 C 0.12 1.43 5.83 -2.47 -0.01 1.42 16
5 N -0.61 -9.59 2.88 -172.20 -0.50 -10.08 16
6 C 0.51 10.46 7.64 -11.07 -0.08 10.38 16
7 O -0.54 -13.25 15.30 5.56 0.09 -13.17 16
8 C -0.13 -2.72 4.31 -27.88 -0.12 -2.84 16
9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16
10 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16
11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
13 N -0.89 -27.95 13.29 55.43 0.74 -27.21 16
14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16
15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
18 C 0.12 1.58 5.36 -4.29 -0.02 1.55 16
19 C -0.12 -1.47 4.35 -28.83 -0.13 -1.60 16
20 C 0.13 1.33 0.59 -134.64 -0.08 1.25 16
21 C -0.15 -1.39 7.12 37.91 0.27 -1.12 16
22 C -0.18 -1.53 7.69 37.16 0.29 -1.24 16
23 H 0.03 0.19 6.29 -51.93 -0.33 -0.14 16
24 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16
25 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16
26 H 0.08 0.60 7.32 -51.42 -0.38 0.22 16
27 H 0.05 0.45 5.30 -52.18 -0.28 0.18 16
28 H 0.08 1.06 6.97 -52.13 -0.36 0.70 16
29 H 0.06 0.71 8.13 -51.99 -0.42 0.29 16
30 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16
31 H 0.08 1.50 8.08 -51.93 -0.42 1.08 16
32 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16
33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16
34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
35 H 0.06 0.72 5.70 -51.98 -0.30 0.42 16
36 H 0.08 1.34 7.05 -51.63 -0.36 0.97 16
37 H 0.07 0.78 8.01 -51.54 -0.41 0.37 16
38 H 0.07 1.12 8.01 -51.68 -0.41 0.70 16
39 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16
40 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16
41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
42 H 0.06 0.48 5.74 -51.93 -0.30 0.18 16
43 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16
44 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16
LS Contribution 328.63 15.07 4.95 4.95
Total: -1.00 -34.16 328.63 -7.99 -42.15
By element:
Atomic # 1 Polarization: 4.16 SS G_CDS: -7.39 Total: -3.22 kcal
Atomic # 6 Polarization: -3.90 SS G_CDS: 0.06 Total: -3.84 kcal
Atomic # 7 Polarization: -43.16 SS G_CDS: -0.68 Total: -43.85 kcal
Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.17 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -34.16 -7.99 -42.15 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871158358.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal
(2) G-P(sol) polarization free energy of solvation -34.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds