Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.43563 * 111.87947 * 2 1 4 4 C 1.54456 * 109.74446 * 223.17606 * 3 2 1 5 5 N 1.47974 * 110.24050 * 296.73605 * 4 3 2 6 6 C 1.34578 * 119.01177 * 164.31314 * 5 4 3 7 7 O 1.21276 * 120.00235 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47059 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46785 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00403 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99639 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00374 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99774 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47416 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47350 * 119.99315 * 14 12 10 17 17 H 1.48499 * 109.47037 * 239.99691 * 14 12 10 18 18 C 1.44751 * 121.74520 * 344.35439 * 5 4 3 19 19 C 1.54311 * 110.08925 * 81.60446 * 18 5 4 20 20 C 1.45030 * 111.81111 * 132.03377 * 2 1 3 21 21 C 1.54443 * 106.82284 * 45.93994 * 20 2 1 22 22 C 1.53001 * 110.29198 * 290.75167 * 20 2 1 23 23 H 1.09003 * 109.47188 * 281.26787 * 1 2 3 24 24 H 1.08998 * 109.47594 * 41.26868 * 1 2 3 25 25 H 1.09000 * 109.46917 * 161.27158 * 1 2 3 26 26 H 1.09895 * 109.12094 * 341.44519 * 3 2 1 27 27 H 1.08554 * 112.73543 * 101.45866 * 3 2 1 28 28 H 1.08641 * 109.28372 * 57.03000 * 4 3 2 29 29 H 1.08899 * 108.97704 * 176.97860 * 4 3 2 30 30 H 1.09003 * 109.46841 * 299.99784 * 8 6 5 31 31 H 1.09003 * 109.47207 * 59.99905 * 8 6 5 32 32 H 1.09005 * 109.46700 * 299.99609 * 9 8 6 33 33 H 1.08998 * 109.47493 * 59.99686 * 9 8 6 34 34 H 0.96996 * 120.00638 * 180.02562 * 13 12 10 35 35 H 1.08916 * 109.46669 * 319.50686 * 18 5 4 36 36 H 1.09521 * 108.67141 * 201.29490 * 18 5 4 37 37 H 1.09678 * 108.93990 * 161.83384 * 19 18 5 38 38 H 1.09447 * 109.45016 * 44.10316 * 19 18 5 39 39 H 1.08994 * 109.47632 * 178.85506 * 21 20 2 40 40 H 1.08997 * 109.47355 * 298.85629 * 21 20 2 41 41 H 1.09005 * 109.46897 * 58.85260 * 21 20 2 42 42 H 1.09000 * 109.47237 * 290.01504 * 22 20 2 43 43 H 1.08996 * 109.46932 * 50.02338 * 22 20 2 44 44 H 1.08999 * 109.46586 * 170.01777 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0039 1.3322 0.0000 4 6 3.1821 1.4214 -0.9947 5 7 4.2837 0.5319 -0.5646 6 6 5.2541 0.2226 -1.4441 7 8 6.1657 -0.5045 -1.1105 8 6 5.2088 0.7806 -2.8433 9 6 6.4201 0.2787 -3.6320 10 6 6.3750 0.8373 -5.0310 11 1 5.5635 1.4850 -5.3280 12 6 7.3694 0.5204 -5.9320 13 7 8.3574 -0.2687 -5.5706 14 14 7.3132 1.2122 -7.6663 15 1 6.1079 2.0658 -7.8200 16 1 8.5309 2.0252 -7.9147 17 1 7.2560 0.0952 -8.6431 18 6 4.3433 -0.0135 0.7750 19 6 3.4321 -1.2542 0.8832 20 6 2.0077 -0.9016 1.0001 21 6 1.2193 -2.2242 0.8807 22 6 1.7328 -0.3612 2.4049 23 1 -0.3634 0.2008 1.0079 24 1 -0.3634 0.7724 -0.6778 25 1 -0.3633 -0.9733 -0.3300 26 1 1.2246 2.0331 -0.3304 27 1 2.3448 1.6474 0.9812 28 1 2.8414 1.1228 -1.9822 29 1 3.5434 2.4482 -1.0247 30 1 4.2931 0.4530 -3.3356 31 1 5.2291 1.8696 -2.8010 32 1 7.3355 0.6067 -3.1395 33 1 6.4003 -0.8103 -3.6743 34 1 9.0571 -0.4914 -6.2043 35 1 4.0448 0.7505 1.4915 36 1 5.3773 -0.3037 0.9897 37 1 3.7251 -1.8351 1.7661 38 1 3.5731 -1.8879 0.0020 39 1 1.6049 -2.9436 1.6031 40 1 0.1643 -2.0378 1.0813 41 1 1.3323 -2.6249 -0.1267 42 1 2.3431 0.5250 2.5792 43 1 0.6785 -0.0995 2.4935 44 1 1.9811 -1.1242 3.1426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871158358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -30.333225 kcal Electronic energy + Delta-G solvation = -21752.392843 eV Core-core repulsion = 18704.780999 eV Total energy + Delta-G solvation = -3047.611843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51282 -38.69716 -35.10970 -34.18720 -33.35666 -31.06547 -29.40479 -29.03343 -27.42636 -25.89167 -25.19808 -23.67627 -22.32002 -20.85763 -18.96694 -18.31518 -16.93343 -16.23962 -15.99904 -15.80841 -15.46260 -14.92073 -14.49860 -14.35457 -13.87400 -13.71711 -13.42596 -12.75042 -12.50625 -12.46915 -12.35455 -12.12139 -12.04678 -11.86169 -11.80887 -11.52673 -11.46040 -11.31300 -10.97257 -10.90178 -10.72862 -10.52881 -10.44728 -9.85473 -9.54503 -9.06435 -8.87469 -8.27941 -8.23276 -8.19190 -5.90305 -3.94131 3.34822 3.36323 3.42413 3.44489 3.47366 3.65287 4.51851 4.53918 4.70082 4.79274 4.91130 4.97110 5.10784 5.18482 5.25842 5.30211 5.39110 5.42490 5.44619 5.49738 5.57858 5.64038 5.65676 5.71225 5.74156 5.84720 5.87357 5.95919 6.07306 6.13285 6.33981 6.37087 6.39588 6.93664 7.01371 7.07871 7.26440 7.81628 7.87270 7.95274 8.14681 8.46298 8.90719 9.15115 9.69015 11.20796 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.004092 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.076487 B = 6840.803059 C = 7175.100947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.553 5.553 3 C 0.061 3.939 4 C 0.118 3.882 5 N -0.615 5.615 6 C 0.509 3.491 7 O -0.539 6.539 8 C -0.127 4.127 9 C 0.037 3.963 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.116 3.884 19 C -0.122 4.122 20 C 0.133 3.867 21 C -0.152 4.152 22 C -0.184 4.184 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.022 1.928 15.953 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.277 5.277 3 C -0.067 4.067 4 C -0.006 4.006 5 N -0.350 5.350 6 C 0.300 3.700 7 O -0.415 6.415 8 C -0.167 4.167 9 C -0.001 4.001 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.008 4.008 19 C -0.161 4.161 20 C 0.044 3.956 21 C -0.209 4.209 22 C -0.243 4.243 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.239 1.281 15.688 23.344 hybrid contribution -0.308 0.688 -0.219 0.785 sum -17.548 1.970 15.469 23.475 Atomic orbital electron populations 1.22418 0.86127 1.02704 0.99746 1.57837 1.06814 1.11255 1.51825 1.21826 0.97025 0.89059 0.98839 1.22173 0.86267 0.93101 0.99051 1.47897 1.25081 1.49944 1.12102 1.21479 0.80471 0.80083 0.87993 1.90641 1.34858 1.36983 1.79008 1.21856 1.03692 1.00771 0.90362 1.18900 0.91015 0.97048 0.93116 1.21276 1.08558 1.29683 0.96695 0.92606 1.25023 0.95522 0.95238 0.98622 1.70009 1.11945 1.35902 1.35071 0.86555 0.77868 0.78817 0.84837 1.19754 1.21070 1.21062 1.21206 1.00954 0.94451 0.84223 1.21285 0.92871 0.98683 1.03220 1.19446 0.95432 0.92356 0.88351 1.22543 0.99602 0.96259 1.02531 1.22617 1.01420 1.01898 0.98344 0.95567 0.91566 0.91124 0.90446 0.93342 0.89994 0.91776 0.90328 0.90578 0.95959 0.95920 0.93080 0.91955 0.89717 0.90751 0.90722 0.92441 0.92587 0.91749 0.92599 0.92712 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 8.40 60.06 0.50 0.80 16 2 N -0.55 -5.63 3.96 -232.49 -0.92 -6.55 16 3 C 0.06 0.59 4.96 -4.83 -0.02 0.56 16 4 C 0.12 1.43 5.83 -2.47 -0.01 1.42 16 5 N -0.61 -9.59 2.88 -172.20 -0.50 -10.08 16 6 C 0.51 10.46 7.64 -11.07 -0.08 10.38 16 7 O -0.54 -13.25 15.30 5.56 0.09 -13.17 16 8 C -0.13 -2.72 4.31 -27.88 -0.12 -2.84 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.95 13.29 55.43 0.74 -27.21 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.12 1.58 5.36 -4.29 -0.02 1.55 16 19 C -0.12 -1.47 4.35 -28.83 -0.13 -1.60 16 20 C 0.13 1.33 0.59 -134.64 -0.08 1.25 16 21 C -0.15 -1.39 7.12 37.91 0.27 -1.12 16 22 C -0.18 -1.53 7.69 37.16 0.29 -1.24 16 23 H 0.03 0.19 6.29 -51.93 -0.33 -0.14 16 24 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16 25 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 26 H 0.08 0.60 7.32 -51.42 -0.38 0.22 16 27 H 0.05 0.45 5.30 -52.18 -0.28 0.18 16 28 H 0.08 1.06 6.97 -52.13 -0.36 0.70 16 29 H 0.06 0.71 8.13 -51.99 -0.42 0.29 16 30 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 31 H 0.08 1.50 8.08 -51.93 -0.42 1.08 16 32 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.06 0.72 5.70 -51.98 -0.30 0.42 16 36 H 0.08 1.34 7.05 -51.63 -0.36 0.97 16 37 H 0.07 0.78 8.01 -51.54 -0.41 0.37 16 38 H 0.07 1.12 8.01 -51.68 -0.41 0.70 16 39 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.48 5.74 -51.93 -0.30 0.18 16 43 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 44 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -34.16 328.63 -7.99 -42.15 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -7.39 Total: -3.22 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 0.06 Total: -3.84 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.68 Total: -43.85 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.16 -7.99 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871158358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds