Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.43563 * 111.87947 * 2 1 4 4 C 1.54456 * 109.74446 * 223.17606 * 3 2 1 5 5 N 1.47974 * 110.24050 * 296.73605 * 4 3 2 6 6 C 1.34578 * 119.01177 * 164.31314 * 5 4 3 7 7 O 1.21276 * 120.00235 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47059 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46785 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00403 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99639 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00374 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99774 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47416 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47350 * 119.99315 * 14 12 10 17 17 H 1.48499 * 109.47037 * 239.99691 * 14 12 10 18 18 C 1.44751 * 121.74520 * 344.35439 * 5 4 3 19 19 C 1.54311 * 110.08925 * 81.60446 * 18 5 4 20 20 C 1.45030 * 111.81111 * 132.03377 * 2 1 3 21 21 C 1.54443 * 106.82284 * 45.93994 * 20 2 1 22 22 C 1.53001 * 110.29198 * 290.75167 * 20 2 1 23 23 H 1.09003 * 109.47188 * 281.26787 * 1 2 3 24 24 H 1.08998 * 109.47594 * 41.26868 * 1 2 3 25 25 H 1.09000 * 109.46917 * 161.27158 * 1 2 3 26 26 H 1.09895 * 109.12094 * 341.44519 * 3 2 1 27 27 H 1.08554 * 112.73543 * 101.45866 * 3 2 1 28 28 H 1.08641 * 109.28372 * 57.03000 * 4 3 2 29 29 H 1.08899 * 108.97704 * 176.97860 * 4 3 2 30 30 H 1.09003 * 109.46841 * 299.99784 * 8 6 5 31 31 H 1.09003 * 109.47207 * 59.99905 * 8 6 5 32 32 H 1.09005 * 109.46700 * 299.99609 * 9 8 6 33 33 H 1.08998 * 109.47493 * 59.99686 * 9 8 6 34 34 H 0.96996 * 120.00638 * 180.02562 * 13 12 10 35 35 H 1.08916 * 109.46669 * 319.50686 * 18 5 4 36 36 H 1.09521 * 108.67141 * 201.29490 * 18 5 4 37 37 H 1.09678 * 108.93990 * 161.83384 * 19 18 5 38 38 H 1.09447 * 109.45016 * 44.10316 * 19 18 5 39 39 H 1.08994 * 109.47632 * 178.85506 * 21 20 2 40 40 H 1.08997 * 109.47355 * 298.85629 * 21 20 2 41 41 H 1.09005 * 109.46897 * 58.85260 * 21 20 2 42 42 H 1.09000 * 109.47237 * 290.01504 * 22 20 2 43 43 H 1.08996 * 109.46932 * 50.02338 * 22 20 2 44 44 H 1.08999 * 109.46586 * 170.01777 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0039 1.3322 0.0000 4 6 3.1821 1.4214 -0.9947 5 7 4.2837 0.5319 -0.5646 6 6 5.2541 0.2226 -1.4441 7 8 6.1657 -0.5045 -1.1105 8 6 5.2088 0.7806 -2.8433 9 6 6.4201 0.2787 -3.6320 10 6 6.3750 0.8373 -5.0310 11 1 5.5635 1.4850 -5.3280 12 6 7.3694 0.5204 -5.9320 13 7 8.3574 -0.2687 -5.5706 14 14 7.3132 1.2122 -7.6663 15 1 6.1079 2.0658 -7.8200 16 1 8.5309 2.0252 -7.9147 17 1 7.2560 0.0952 -8.6431 18 6 4.3433 -0.0135 0.7750 19 6 3.4321 -1.2542 0.8832 20 6 2.0077 -0.9016 1.0001 21 6 1.2193 -2.2242 0.8807 22 6 1.7328 -0.3612 2.4049 23 1 -0.3634 0.2008 1.0079 24 1 -0.3634 0.7724 -0.6778 25 1 -0.3633 -0.9733 -0.3300 26 1 1.2246 2.0331 -0.3304 27 1 2.3448 1.6474 0.9812 28 1 2.8414 1.1228 -1.9822 29 1 3.5434 2.4482 -1.0247 30 1 4.2931 0.4530 -3.3356 31 1 5.2291 1.8696 -2.8010 32 1 7.3355 0.6067 -3.1395 33 1 6.4003 -0.8103 -3.6743 34 1 9.0571 -0.4914 -6.2043 35 1 4.0448 0.7505 1.4915 36 1 5.3773 -0.3037 0.9897 37 1 3.7251 -1.8351 1.7661 38 1 3.5731 -1.8879 0.0020 39 1 1.6049 -2.9436 1.6031 40 1 0.1643 -2.0378 1.0813 41 1 1.3323 -2.6249 -0.1267 42 1 2.3431 0.5250 2.5792 43 1 0.6785 -0.0995 2.4935 44 1 1.9811 -1.1242 3.1426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871158358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = -53.806373 kcal Electronic energy + Delta-G solvation = -21753.410715 eV Core-core repulsion = 18704.780999 eV Total energy + Delta-G solvation = -3048.629716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57292 -40.03182 -36.42708 -35.62912 -34.94056 -33.04396 -30.51925 -29.99830 -28.14820 -27.68477 -26.14100 -24.86494 -23.69897 -22.49932 -19.79750 -19.72282 -18.79274 -17.61148 -17.30084 -16.96613 -16.70290 -16.40649 -15.98172 -15.43871 -15.17611 -14.66197 -14.51753 -14.28084 -14.02111 -13.74018 -13.31583 -13.25649 -13.13869 -12.98335 -12.83719 -12.81775 -12.72960 -12.42223 -12.28934 -12.20399 -12.12587 -11.91857 -11.63499 -11.57815 -11.30471 -11.24021 -10.61419 -10.57067 -9.52486 -8.93876 -8.17125 -6.31469 1.42392 1.44377 1.57752 1.74222 2.15517 2.44306 2.90454 3.15671 3.71406 3.73532 3.96001 4.04143 4.08977 4.18569 4.29728 4.42080 4.49435 4.52582 4.57377 4.62120 4.64576 4.72052 4.78818 4.82202 4.82649 4.87631 4.95892 4.98712 5.06038 5.11062 5.15768 5.24689 5.31616 5.48904 5.49994 5.63241 5.78235 5.86404 6.18619 6.32271 6.45058 6.53367 6.86983 7.34196 7.39139 8.96050 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.004092 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.076487 B = 6840.803059 C = 7175.100947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.574 5.574 3 C 0.067 3.933 4 C 0.106 3.894 5 N -0.600 5.600 6 C 0.504 3.496 7 O -0.595 6.595 8 C -0.113 4.113 9 C 0.044 3.956 10 C -0.541 4.541 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.939 5.939 14 Si 0.976 3.024 15 H -0.252 1.252 16 H -0.279 1.279 17 H -0.280 1.280 18 C 0.113 3.887 19 C -0.113 4.113 20 C 0.131 3.869 21 C -0.147 4.147 22 C -0.175 4.175 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.100 0.900 32 H -0.019 1.019 33 H -0.022 1.022 34 H 0.263 0.737 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.062 3.992 16.201 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.299 5.299 3 C -0.062 4.062 4 C -0.016 4.016 5 N -0.333 5.333 6 C 0.294 3.706 7 O -0.476 6.476 8 C -0.152 4.152 9 C 0.007 3.993 10 C -0.579 4.579 11 H 0.094 0.906 12 C -0.205 4.205 13 N -0.579 5.579 14 Si 0.799 3.201 15 H -0.175 1.175 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.010 4.010 19 C -0.152 4.152 20 C 0.041 3.959 21 C -0.205 4.205 22 C -0.234 4.234 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.118 0.882 32 H -0.001 1.001 33 H -0.004 1.004 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.357 3.377 15.967 26.091 hybrid contribution 0.617 0.018 -0.243 0.664 sum -19.740 3.395 15.724 25.464 Atomic orbital electron populations 1.22441 0.84510 1.03007 1.00813 1.57764 1.08281 1.11548 1.52270 1.21818 0.96504 0.89451 0.98419 1.22564 0.86199 0.93036 0.99829 1.47903 1.24375 1.49069 1.11924 1.21312 0.81027 0.79821 0.88417 1.90618 1.37427 1.39654 1.79892 1.21593 1.01161 1.01945 0.90512 1.18678 0.92239 0.94295 0.94130 1.21731 1.09201 1.29868 0.97096 0.90627 1.26160 0.94841 0.95355 1.04105 1.70192 1.13018 1.37555 1.37139 0.85248 0.78699 0.78193 0.77944 1.17506 1.20511 1.20620 1.21373 0.99985 0.96033 0.83598 1.21237 0.94463 0.97376 1.02170 1.19392 0.93679 0.93050 0.89756 1.22497 1.00596 0.95952 1.01450 1.22518 1.02159 1.01954 0.96799 0.94238 0.90478 0.91483 0.87638 0.92475 0.90583 0.89902 0.88581 0.88173 1.00099 1.00364 0.92862 0.88791 0.92563 0.89276 0.94424 0.91907 0.90883 0.93835 0.92536 0.91543 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 8.40 127.69 1.07 1.56 16 2 N -0.57 -10.16 3.96 -889.45 -3.53 -13.68 16 3 C 0.07 1.04 4.96 87.42 0.43 1.48 16 4 C 0.11 2.33 5.83 86.59 0.50 2.84 16 5 N -0.60 -18.53 2.88 -817.23 -2.35 -20.88 16 6 C 0.50 21.47 7.64 87.69 0.67 22.14 16 7 O -0.59 -31.37 15.30 -3.02 -0.05 -31.42 16 8 C -0.11 -4.90 4.31 29.85 0.13 -4.77 16 9 C 0.04 2.59 4.26 29.85 0.13 2.71 16 10 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 11 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 12 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 13 N -0.94 -61.02 13.29 21.45 0.28 -60.74 16 14 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 15 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 C 0.11 3.06 5.36 87.15 0.47 3.52 16 19 C -0.11 -2.72 4.35 29.23 0.13 -2.59 16 20 C 0.13 2.35 0.59 2.56 0.00 2.35 16 21 C -0.15 -2.47 7.12 72.47 0.52 -1.96 16 22 C -0.18 -2.32 7.69 71.98 0.55 -1.77 16 23 H 0.04 0.40 6.29 -2.39 -0.02 0.39 16 24 H 0.08 0.80 7.54 -2.39 -0.02 0.79 16 25 H 0.07 0.89 6.50 -2.39 -0.02 0.87 16 26 H 0.11 1.13 7.32 -1.91 -0.01 1.11 16 27 H 0.06 0.82 5.30 -2.62 -0.01 0.81 16 28 H 0.08 1.80 6.97 -2.58 -0.02 1.78 16 29 H 0.08 1.57 8.13 -2.44 -0.02 1.55 16 30 H 0.10 3.82 7.44 -2.39 -0.02 3.80 16 31 H 0.10 3.84 8.08 -2.39 -0.02 3.82 16 32 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 33 H -0.02 -1.47 8.10 -2.39 -0.02 -1.49 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.09 1.96 5.70 -2.43 -0.01 1.94 16 36 H 0.06 1.85 7.05 -2.11 -0.01 1.84 16 37 H 0.09 1.83 8.01 -2.03 -0.02 1.82 16 38 H 0.04 1.17 8.01 -2.15 -0.02 1.15 16 39 H 0.06 0.96 8.09 -2.39 -0.02 0.95 16 40 H 0.07 0.97 6.32 -2.39 -0.02 0.95 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 0.75 5.74 -2.39 -0.01 0.74 16 43 H 0.07 0.75 6.31 -2.39 -0.02 0.74 16 44 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 Total: -1.00 -79.03 328.63 2.66 -76.37 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.97 Total: 9.18 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.30 Total: -6.03 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.60 Total: -95.30 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -79.03 2.66 -76.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871158358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.566 kcal (2) G-P(sol) polarization free energy of solvation -79.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds