Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 108.00852 * 2 1 4 4 C 1.54943 * 108.13434 * 243.20239 * 2 1 3 5 5 C 1.54758 * 109.76610 * 196.85491 * 4 2 1 6 6 N 1.44055 * 110.37272 * 321.91123 * 5 4 2 7 7 C 1.46186 * 106.06924 * 99.84088 * 6 5 4 8 8 C 1.46808 * 114.39034 * 267.64316 * 7 6 5 9 9 N 1.43613 * 108.14245 * 116.80123 * 2 1 3 10 10 C 1.34774 * 120.55717 * 31.27933 * 9 2 1 11 11 O 1.21279 * 120.00424 * 5.48630 * 10 9 2 12 12 C 1.50704 * 119.99908 * 185.48475 * 10 9 2 13 13 C 1.53004 * 109.46871 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46732 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46948 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00196 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00370 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99881 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47233 * 89.99449 * 19 17 15 21 21 H 1.48493 * 109.47269 * 209.99906 * 19 17 15 22 22 H 1.48502 * 109.46932 * 329.99880 * 19 17 15 23 23 H 1.08997 * 109.47421 * 46.57805 * 1 2 3 24 24 H 1.09000 * 109.47054 * 286.57821 * 1 2 3 25 25 H 1.09005 * 109.47211 * 166.58382 * 1 2 3 26 26 H 1.08994 * 109.47291 * 60.00080 * 3 2 1 27 27 H 1.08998 * 109.47717 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46974 * 300.00080 * 3 2 1 29 29 H 1.08993 * 109.42965 * 317.11044 * 4 2 1 30 30 H 1.08994 * 109.43129 * 76.97692 * 4 2 1 31 31 H 1.08993 * 109.41681 * 201.54636 * 5 4 2 32 32 H 1.09004 * 109.02302 * 82.01596 * 5 4 2 33 33 H 1.00902 * 110.99611 * 220.51157 * 6 5 4 34 34 H 1.09002 * 108.49365 * 146.37631 * 7 6 5 35 35 H 1.09000 * 108.49938 * 28.91959 * 7 6 5 36 36 H 1.08997 * 109.97112 * 298.67261 * 8 7 6 37 37 H 1.09000 * 109.96820 * 177.36473 * 8 7 6 38 38 H 1.09009 * 109.46848 * 299.99694 * 12 10 9 39 39 H 1.08998 * 109.47162 * 59.99984 * 12 10 9 40 40 H 1.08997 * 109.47366 * 299.99387 * 13 12 10 41 41 H 1.08998 * 109.47425 * 59.99919 * 13 12 10 42 42 H 1.08997 * 109.46885 * 299.99915 * 14 13 12 43 43 H 1.08998 * 109.47041 * 59.99918 * 14 13 12 44 44 H 0.97006 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0029 1.4551 0.0000 4 6 2.0122 -0.6638 -1.3143 5 6 3.4997 -1.0694 -1.1807 6 7 4.2268 -0.0715 -0.4387 7 6 4.3446 -0.5867 0.9243 8 6 3.2707 -0.1585 1.8292 9 7 1.9771 -0.6154 1.2181 10 6 1.2479 -1.5861 1.8033 11 8 0.2573 -2.0165 1.2516 12 6 1.6634 -2.1367 3.1432 13 6 0.6735 -3.2189 3.5790 14 6 1.0958 -3.7784 4.9391 15 6 0.1205 -4.8438 5.3687 16 1 -0.7166 -5.0969 4.7349 17 6 0.2973 -5.4962 6.5704 18 7 -0.5541 -6.4257 6.9455 19 14 1.7455 -5.0590 7.6663 20 1 1.3507 -3.9723 8.5982 21 1 2.1554 -6.2548 8.4455 22 1 2.8817 -4.6021 6.8263 23 1 -0.3634 0.7063 -0.7464 24 1 -0.3633 0.2932 0.9850 25 1 -0.3634 -0.9997 -0.2384 26 1 1.6267 1.9594 0.8899 27 1 3.0926 1.4830 -0.0005 28 1 1.6266 1.9594 -0.8900 29 1 1.4093 -1.5493 -1.5157 30 1 1.9049 0.0422 -2.1377 31 1 3.9379 -1.1718 -2.1733 32 1 3.5621 -2.0242 -0.6584 33 1 5.1366 0.0892 -0.8444 34 1 5.2975 -0.2562 1.3377 35 1 4.3486 -1.6759 0.8832 36 1 3.2747 0.9273 1.9240 37 1 3.4031 -0.6191 2.8082 38 1 2.6615 -2.5680 3.0650 39 1 1.6714 -1.3332 3.8796 40 1 -0.3247 -2.7881 3.6571 41 1 0.6659 -4.0223 2.8425 42 1 2.0939 -4.2092 4.8606 43 1 1.1037 -2.9751 5.6758 44 1 -0.4299 -6.8844 7.7912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872301344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = -19.095221 kcal Electronic energy + Delta-G solvation = -21847.507120 eV Core-core repulsion = 18800.382593 eV Total energy + Delta-G solvation = -3047.124527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85828 -38.13965 -35.35378 -34.35739 -33.74963 -31.95549 -29.84902 -28.16855 -27.85239 -26.95343 -23.98819 -23.21183 -21.56187 -20.96834 -19.76362 -18.09024 -17.32653 -16.69334 -16.51647 -16.07812 -15.37235 -15.03639 -14.32976 -14.23788 -14.03060 -13.56075 -13.21602 -13.07710 -12.90417 -12.62459 -12.41987 -12.05623 -11.92029 -11.79256 -11.64675 -11.52202 -11.28640 -11.09180 -10.92170 -10.86862 -10.75498 -10.65455 -9.91769 -9.70574 -9.64758 -9.15805 -8.89966 -8.77031 -8.50086 -8.49020 -5.99132 -3.96671 2.93829 3.05391 3.32223 3.39121 3.41890 3.89019 4.48255 4.52128 4.69875 4.86811 4.93835 5.04218 5.05775 5.15550 5.32627 5.34170 5.35269 5.46098 5.54817 5.59351 5.63108 5.63763 5.71964 5.81338 5.84948 5.96273 5.98861 6.13547 6.23937 6.42376 6.52509 6.59675 6.59969 6.72125 6.92880 6.96496 7.02769 7.40170 7.48469 7.60296 7.84728 8.54161 8.61519 9.07910 9.63054 11.14660 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030265 B = 0.004243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.929625 B = 6597.757158 C = 7038.324522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.184 3.816 3 C -0.166 4.166 4 C -0.116 4.116 5 C 0.048 3.952 6 N -0.659 5.659 7 C 0.026 3.974 8 C 0.110 3.890 9 N -0.607 5.607 10 C 0.513 3.487 11 O -0.528 6.528 12 C -0.141 4.141 13 C -0.086 4.086 14 C -0.014 4.014 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.342 0.658 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 16.867 -15.481 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.098 3.902 3 C -0.223 4.223 4 C -0.156 4.156 5 C -0.082 4.082 6 N -0.288 5.288 7 C -0.104 4.104 8 C -0.012 4.012 9 N -0.342 5.342 10 C 0.302 3.698 11 O -0.404 6.404 12 C -0.181 4.181 13 C -0.124 4.124 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.028 0.972 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.754 16.939 -15.510 25.800 hybrid contribution 1.410 -0.535 0.592 1.620 sum 13.164 16.404 -14.918 25.786 Atomic orbital electron populations 1.22479 0.94205 1.03568 1.01196 1.19795 0.93833 0.92479 0.84095 1.22599 1.05299 0.93919 1.00519 1.22656 0.94933 1.00822 0.97181 1.22072 0.95203 0.93291 0.97621 1.60511 1.21794 1.43810 1.02666 1.21376 0.99087 0.99010 0.90936 1.21322 0.82161 1.01299 0.96420 1.48333 1.23216 1.38654 1.23982 1.21077 0.82839 0.78321 0.87513 1.90640 1.26664 1.58183 1.64962 1.21896 1.02102 1.00808 0.93280 1.21255 0.97150 0.95520 0.98500 1.19603 0.96981 0.96097 0.92452 1.21169 1.11177 1.18458 1.04768 0.90960 1.25049 0.96131 0.94766 0.97685 1.69924 1.36717 1.25317 1.22464 0.86764 0.83687 0.77917 0.80796 1.20333 1.21465 1.19100 0.93738 0.93068 0.89483 0.93869 0.87933 0.93007 0.91610 0.91114 0.92351 0.93462 0.84026 0.91008 0.93379 0.89862 0.88661 0.89882 0.89599 0.92137 0.92211 0.96796 0.97159 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 6.99 37.15 0.26 -1.90 16 2 C 0.18 2.18 0.72 -132.33 -0.10 2.08 16 3 C -0.17 -1.65 6.82 37.16 0.25 -1.39 16 4 C -0.12 -1.24 5.42 -24.78 -0.13 -1.37 16 5 C 0.05 0.43 6.16 -4.42 -0.03 0.40 16 6 N -0.66 -4.80 4.02 -118.68 -0.48 -5.28 16 7 C 0.03 0.20 5.69 -7.17 -0.04 0.16 16 8 C 0.11 1.00 5.67 -4.94 -0.03 0.97 16 9 N -0.61 -7.57 2.47 -159.99 -0.39 -7.97 16 10 C 0.51 8.24 7.13 -10.98 -0.08 8.17 16 11 O -0.53 -10.32 12.67 5.56 0.07 -10.25 16 12 C -0.14 -2.25 4.07 -27.88 -0.11 -2.36 16 13 C -0.09 -1.82 4.44 -26.72 -0.12 -1.94 16 14 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 16 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 19 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 23 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 24 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 25 H 0.09 1.41 5.88 -51.93 -0.31 1.11 16 26 H 0.04 0.45 7.98 -51.93 -0.41 0.03 16 27 H 0.10 0.94 4.58 -51.93 -0.24 0.70 16 28 H 0.05 0.49 8.00 -51.93 -0.42 0.07 16 29 H 0.07 0.81 7.83 -51.93 -0.41 0.40 16 30 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.50 6.61 -51.93 -0.34 0.16 16 33 H 0.34 1.78 8.87 -39.29 -0.35 1.43 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.43 6.70 -51.93 -0.35 0.09 16 36 H 0.08 0.68 6.50 -51.93 -0.34 0.34 16 37 H 0.10 0.80 6.07 -51.93 -0.32 0.49 16 38 H 0.08 1.17 7.75 -51.92 -0.40 0.77 16 39 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 40 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 41 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 42 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -33.45 325.44 -8.01 -41.46 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.55 Total: -0.86 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.67 Total: -11.41 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.10 Total: -41.03 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.45 -8.01 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872301344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.367 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds