Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 108.00852 * 2 1 4 4 C 1.54943 * 108.13434 * 243.20239 * 2 1 3 5 5 C 1.54758 * 109.76610 * 196.85491 * 4 2 1 6 6 N 1.44055 * 110.37272 * 321.91123 * 5 4 2 7 7 C 1.46186 * 106.06924 * 99.84088 * 6 5 4 8 8 C 1.46808 * 114.39034 * 267.64316 * 7 6 5 9 9 N 1.43613 * 108.14245 * 116.80123 * 2 1 3 10 10 C 1.34774 * 120.55717 * 31.27933 * 9 2 1 11 11 O 1.21279 * 120.00424 * 5.48630 * 10 9 2 12 12 C 1.50704 * 119.99908 * 185.48475 * 10 9 2 13 13 C 1.53004 * 109.46871 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46732 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46948 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00196 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00370 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99881 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47233 * 89.99449 * 19 17 15 21 21 H 1.48493 * 109.47269 * 209.99906 * 19 17 15 22 22 H 1.48502 * 109.46932 * 329.99880 * 19 17 15 23 23 H 1.08997 * 109.47421 * 46.57805 * 1 2 3 24 24 H 1.09000 * 109.47054 * 286.57821 * 1 2 3 25 25 H 1.09005 * 109.47211 * 166.58382 * 1 2 3 26 26 H 1.08994 * 109.47291 * 60.00080 * 3 2 1 27 27 H 1.08998 * 109.47717 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46974 * 300.00080 * 3 2 1 29 29 H 1.08993 * 109.42965 * 317.11044 * 4 2 1 30 30 H 1.08994 * 109.43129 * 76.97692 * 4 2 1 31 31 H 1.08993 * 109.41681 * 201.54636 * 5 4 2 32 32 H 1.09004 * 109.02302 * 82.01596 * 5 4 2 33 33 H 1.00902 * 110.99611 * 220.51157 * 6 5 4 34 34 H 1.09002 * 108.49365 * 146.37631 * 7 6 5 35 35 H 1.09000 * 108.49938 * 28.91959 * 7 6 5 36 36 H 1.08997 * 109.97112 * 298.67261 * 8 7 6 37 37 H 1.09000 * 109.96820 * 177.36473 * 8 7 6 38 38 H 1.09009 * 109.46848 * 299.99694 * 12 10 9 39 39 H 1.08998 * 109.47162 * 59.99984 * 12 10 9 40 40 H 1.08997 * 109.47366 * 299.99387 * 13 12 10 41 41 H 1.08998 * 109.47425 * 59.99919 * 13 12 10 42 42 H 1.08997 * 109.46885 * 299.99915 * 14 13 12 43 43 H 1.08998 * 109.47041 * 59.99918 * 14 13 12 44 44 H 0.97006 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0029 1.4551 0.0000 4 6 2.0122 -0.6638 -1.3143 5 6 3.4997 -1.0694 -1.1807 6 7 4.2268 -0.0715 -0.4387 7 6 4.3446 -0.5867 0.9243 8 6 3.2707 -0.1585 1.8292 9 7 1.9771 -0.6154 1.2181 10 6 1.2479 -1.5861 1.8033 11 8 0.2573 -2.0165 1.2516 12 6 1.6634 -2.1367 3.1432 13 6 0.6735 -3.2189 3.5790 14 6 1.0958 -3.7784 4.9391 15 6 0.1205 -4.8438 5.3687 16 1 -0.7166 -5.0969 4.7349 17 6 0.2973 -5.4962 6.5704 18 7 -0.5541 -6.4257 6.9455 19 14 1.7455 -5.0590 7.6663 20 1 1.3507 -3.9723 8.5982 21 1 2.1554 -6.2548 8.4455 22 1 2.8817 -4.6021 6.8263 23 1 -0.3634 0.7063 -0.7464 24 1 -0.3633 0.2932 0.9850 25 1 -0.3634 -0.9997 -0.2384 26 1 1.6267 1.9594 0.8899 27 1 3.0926 1.4830 -0.0005 28 1 1.6266 1.9594 -0.8900 29 1 1.4093 -1.5493 -1.5157 30 1 1.9049 0.0422 -2.1377 31 1 3.9379 -1.1718 -2.1733 32 1 3.5621 -2.0242 -0.6584 33 1 5.1366 0.0892 -0.8444 34 1 5.2975 -0.2562 1.3377 35 1 4.3486 -1.6759 0.8832 36 1 3.2747 0.9273 1.9240 37 1 3.4031 -0.6191 2.8082 38 1 2.6615 -2.5680 3.0650 39 1 1.6714 -1.3332 3.8796 40 1 -0.3247 -2.7881 3.6571 41 1 0.6659 -4.0223 2.8425 42 1 2.0939 -4.2092 4.8606 43 1 1.1037 -2.9751 5.6758 44 1 -0.4299 -6.8844 7.7912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872301344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = -42.056656 kcal Electronic energy + Delta-G solvation = -21848.502803 eV Core-core repulsion = 18800.382593 eV Total energy + Delta-G solvation = -3048.120210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85246 -39.17362 -36.46975 -35.81513 -34.92471 -33.91921 -30.89717 -29.79933 -28.68191 -27.85086 -25.77829 -24.02493 -22.67004 -22.12832 -21.26509 -19.22940 -18.81892 -18.08018 -17.48691 -17.08264 -16.63112 -16.25385 -15.80183 -15.43846 -15.11433 -14.82294 -14.67904 -14.33249 -14.03008 -13.76404 -13.69656 -13.41969 -13.12551 -12.93349 -12.74324 -12.65733 -12.47001 -12.31643 -12.15184 -11.91630 -11.80601 -11.76167 -11.61859 -11.50041 -11.45072 -11.31328 -10.75215 -10.18579 -9.56941 -9.33986 -8.27793 -6.33703 1.38237 1.42124 1.54151 1.72561 2.07003 2.39226 3.07274 3.30137 3.55239 3.90359 4.03133 4.11399 4.14895 4.21034 4.26100 4.36592 4.44705 4.51116 4.53736 4.69076 4.78239 4.80579 4.86967 4.87886 4.90355 4.94233 4.96663 5.02209 5.04528 5.08449 5.14729 5.32377 5.37795 5.54188 5.59379 5.66221 5.69936 5.92279 5.96409 6.30377 6.52267 6.58808 6.74859 7.30559 7.36767 8.90065 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030265 B = 0.004243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.929625 B = 6597.757158 C = 7038.324522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 C -0.155 4.155 4 C -0.117 4.117 5 C 0.056 3.944 6 N -0.655 5.655 7 C 0.026 3.974 8 C 0.102 3.898 9 N -0.598 5.598 10 C 0.506 3.494 11 O -0.578 6.578 12 C -0.129 4.129 13 C -0.078 4.078 14 C -0.007 4.007 15 C -0.541 4.541 16 H 0.017 0.983 17 C -0.003 4.003 18 N -0.958 5.958 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.235 1.235 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.359 0.641 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 19.653 -15.145 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.092 3.908 3 C -0.213 4.213 4 C -0.156 4.156 5 C -0.075 4.075 6 N -0.285 5.285 7 C -0.104 4.104 8 C -0.018 4.018 9 N -0.332 5.332 10 C 0.296 3.704 11 O -0.458 6.458 12 C -0.168 4.168 13 C -0.116 4.116 14 C -0.044 4.044 15 C -0.579 4.579 16 H 0.035 0.965 17 C -0.199 4.199 18 N -0.598 5.598 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.158 1.158 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.179 0.821 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.060 19.774 -15.206 29.667 hybrid contribution -0.038 -1.424 0.407 1.482 sum 16.021 18.350 -14.799 28.503 Atomic orbital electron populations 1.22390 0.96293 1.01945 1.00295 1.19952 0.92307 0.94109 0.84440 1.22533 1.06132 0.91840 1.00759 1.22638 0.96088 0.99986 0.96910 1.21942 0.94127 0.92706 0.98730 1.60375 1.22821 1.42834 1.02518 1.21343 0.99934 0.98251 0.90888 1.21712 0.80386 1.02475 0.97224 1.48407 1.23874 1.37029 1.23843 1.21144 0.82650 0.78981 0.87660 1.90647 1.28933 1.60152 1.66114 1.21738 1.01427 0.99831 0.93853 1.21019 0.97529 0.96376 0.96682 1.19531 0.95994 0.94927 0.93996 1.21549 1.11132 1.20537 1.04640 0.96470 1.26208 0.99963 0.94234 0.99484 1.70111 1.39432 1.26907 1.23394 0.85485 0.79600 0.78035 0.78442 1.18851 1.21153 1.15761 0.92060 0.95166 0.92684 0.94245 0.86431 0.92217 0.94350 0.89543 0.90484 0.95432 0.82086 0.87729 0.94764 0.88150 0.87462 0.87085 0.86936 0.94839 0.94829 0.95119 0.95287 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 6.99 71.98 0.50 -3.81 16 2 C 0.18 4.02 0.72 4.80 0.00 4.03 16 3 C -0.16 -2.63 6.82 71.98 0.49 -2.14 16 4 C -0.12 -2.38 5.42 31.86 0.17 -2.21 16 5 C 0.06 0.87 6.16 87.43 0.54 1.40 16 6 N -0.65 -7.02 4.02 -529.40 -2.13 -9.15 16 7 C 0.03 0.29 5.69 84.52 0.48 0.77 16 8 C 0.10 1.46 5.67 83.74 0.47 1.94 16 9 N -0.60 -14.04 2.47 -778.47 -1.92 -15.96 16 10 C 0.51 16.26 7.13 87.66 0.63 16.89 16 11 O -0.58 -23.98 12.67 -3.03 -0.04 -24.01 16 12 C -0.13 -3.90 4.07 29.85 0.12 -3.78 16 13 C -0.08 -3.36 4.44 30.60 0.14 -3.22 16 14 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 15 C -0.54 -32.99 9.66 25.60 0.25 -32.75 16 16 H 0.02 1.18 7.99 -2.91 -0.02 1.15 16 17 C 0.00 -0.19 5.47 84.65 0.46 0.28 16 18 N -0.96 -62.41 13.96 21.44 0.30 -62.11 16 19 Si 0.96 44.05 27.47 68.60 1.88 45.93 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 23 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 24 H 0.03 0.95 7.70 -2.39 -0.02 0.93 16 25 H 0.05 1.93 5.88 -2.38 -0.01 1.91 16 26 H 0.04 0.70 7.98 -2.39 -0.02 0.69 16 27 H 0.12 1.65 4.58 -2.39 -0.01 1.64 16 28 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 29 H 0.04 0.98 7.83 -2.39 -0.02 0.96 16 30 H 0.09 1.47 7.88 -2.39 -0.02 1.45 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 0.55 6.61 -2.38 -0.02 0.53 16 33 H 0.36 2.09 8.87 -89.69 -0.80 1.30 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.03 0.51 6.70 -2.39 -0.02 0.49 16 36 H 0.10 1.16 6.50 -2.39 -0.02 1.15 16 37 H 0.11 1.30 6.07 -2.39 -0.01 1.29 16 38 H 0.11 2.76 7.75 -2.38 -0.02 2.74 16 39 H 0.11 2.83 7.92 -2.39 -0.02 2.81 16 40 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 42 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 43 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 44 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -78.66 325.44 2.60 -76.05 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.12 Total: 12.08 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.38 Total: -22.83 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.75 Total: -87.22 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -78.66 2.60 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872301344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.998 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds